NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960707
Clone id TST39A01NGRL0008_C06
Library
Length 655
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_C06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TCTAGACACAGTTACCCTCCAGCAGTGCAGGTTTAATGGCGTGCTAGCATCGCATCAATT
TTTCAAGTGAGGACTCGGTGCAAATTCAAGGTAGCCCATTGCAGGAAACTAGCCTTTTGT
GAGCCCATGGCGAAGGCTTTTGAACGCATTAAGTTTGTGGAATTCTAAGCATAGCCGGGT
TTCTGCCGTTCCTTGAGTGCAGAGACCCCCACAGACGCAGGTTTTTTGGAGATCTGTTGC
GCCAACTTCGTGCATTGCAAAGCTTCTGATGGAGATTTGGGCTCTCAGAGTGCGGTCGTG
CCTTGCATTCCTGCTTCTTGGGTGGCCAGTATGCTTTGGCTCGCCCTTGACCTCCATATC
CACCATCTGTGAAAGGCCGAGGCTAGAAGGAGTTGTTGAAAATAATTGGTGCCCCACAGA
TCATGATTATGAGTTACAGACAAAGGTCTTCCCAAAGCGAGGAGTTTTTGAGGTAAATGG
GACAGATCTAGAGAGATACTTGCATGTTTTGAATTCACGAGAGACCATGTATGCAGCTGT
CCTTGTTTATGCAAGATGGTGCCCTTTTTCAAGGGCCTTGTTGCCGTTGTTCAATTCTCT
TTCATCGAGTTTCCCGTCAGTTTATCATTTCGCAGTGGAAGAGTCTGTACTTCAG
■■Homology search results ■■ -
sp_hit_id Q92104
Definition sp|Q92104|CP11B_RANCA Cytochrome P450 11B, mitochondrial OS=Rana catesbeiana
Align length 45
Score (bit) 32.0
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960707|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_C06, 5'
         (655 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92104|CP11B_RANCA Cytochrome P450 11B, mitochondrial OS=Rana...    32   2.9  
sp|Q5N8X6|BGAL3_ORYSJ Beta-galactosidase 3 OS=Oryza sativa subsp...    31   6.5  

>sp|Q92104|CP11B_RANCA Cytochrome P450 11B, mitochondrial OS=Rana
           catesbeiana GN=CYP11B PE=2 SV=1
          Length = 517

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 184 CRSLSAETPTDAGFLEICCANFVHCKASDGDLGSQSAVVPCIPAS 318
           CR+L   +P   GF  +  A  +H    DG L SQ+     IP +
Sbjct: 17  CRTLDTTSPLWTGFSRLSTAPLIHEAREDGSLASQTLPYEAIPTT 61


>sp|Q5N8X6|BGAL3_ORYSJ Beta-galactosidase 3 OS=Oryza sativa subsp.
           japonica GN=Os01g0875500 PE=2 SV=1
          Length = 851

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
 Frame = +1

Query: 124 PMAKAFERIKFVEF*A*PGFCRSL---SAETPTDAGFLEICCANFVHCKASDGDLGSQSA 294
           P  K+   +KFV F    G CRS    S   P     +E  C N   C  S  D G    
Sbjct: 776 PKGKSISSVKFVSFGNPSGTCRSYQQGSCHHPNSISVVEKACLNMNGCTVSLSDEGFGED 835

Query: 295 VVP 303
           + P
Sbjct: 836 LCP 838
tr_hit_id A9S8B2
Definition tr|A9S8B2|A9S8B2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 61
Score (bit) 48.9
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960707|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_C06, 5'
         (655 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S8B2|A9S8B2_PHYPA Predicted protein (Fragment) OS=Physcomit...    49   3e-04
tr|A9NUT7|A9NUT7_PICSI Putative uncharacterized protein OS=Picea...    47   0.001
tr|Q5EUC7|Q5EUC7_MAIZE Adenosine 5'-phosphosulfate reductase 3 (...    46   0.002
tr|B6TY43|B6TY43_MAIZE APRL3-Zea mays adenosine 5'-phosphosulfat...    46   0.002
tr|B4FL05|B4FL05_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.002
tr|Q67VZ8|Q67VZ8_ORYSJ Os06g0220800 protein OS=Oryza sativa subs...    44   0.009
tr|B8B416|B8B416_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.009
tr|A7NUY1|A7NUY1_VITVI Chromosome chr18 scaffold_1, whole genome...    43   0.019
tr|Q84P95|Q84P95_ORYSJ Os02g0754900 protein OS=Oryza sativa subs...    42   0.025
tr|Q5EUC6|Q5EUC6_MAIZE Adenosine 5'-phosphosulfate reductase 4 O...    42   0.025
tr|A3B9R5|A3B9R5_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.056
tr|A2X9R3|A2X9R3_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.056
tr|Q9SRW3|Q9SRW3_ARATH F20H23.9 protein OS=Arabidopsis thaliana ...    41   0.074
tr|Q93YX4|Q93YX4_ARATH Putative uncharacterized protein At3g0386...    41   0.074
tr|Q9ZPE9|Q9ZPE9_ARATH T3H13.4 protein (Putative uncharacterized...    40   0.13 
tr|Q0WT33|Q0WT33_ARATH Protein disulfide isomerase like protein ...    40   0.13 
tr|Q9SA00|Q9SA00_ARATH F21H2.1 protein (Putative uncharacterized...    40   0.16 
tr|Q84M47|Q84M47_ORYSJ Os03g0806500 protein OS=Oryza sativa subs...    38   0.48 
tr|Q5EUC4|Q5EUC4_MAIZE Adenosine 5'-phosphosulfate reductase 6 (...    38   0.48 
tr|B8ALT0|B8ALT0_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.48 
tr|B6TB09|B6TB09_MAIZE APRL6-Zea mays adenosine 5'-phosphosulfat...    38   0.48 
tr|A3ANU5|A3ANU5_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.48 
tr|Q5EUC3|Q5EUC3_MAIZE Adenosine 5'-phosphosulfate reductase 7 O...    38   0.62 
tr|B6UE94|B6UE94_MAIZE APRL6-Zea mays adenosine 5'-phosphosulfat...    38   0.62 
tr|B4FJZ8|B4FJZ8_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.62 
tr|Q5EUC1|Q5EUC1_MAIZE APRL5-Zea mays adenosine 5'-phosphosulfat...    37   0.82 
tr|B4G1W2|B4G1W2_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.82 
tr|Q6Z567|Q6Z567_ORYSJ Disulfide isomerase-like protein OS=Oryza...    36   1.8  
tr|Q5EUC5|Q5EUC5_MAIZE Adenosine 5'-phosphosulfate reductase 5 (...    36   1.8  
tr|Q5DJV7|Q5DJV7_ORYSJ Adenosine 5'-phosphosulfate reductase-lik...    36   1.8  

>tr|A9S8B2|A9S8B2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46378 PE=4 SV=1
          Length = 175

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 25/61 (40%), Positives = 33/61 (54%)
 Frame = +2

Query: 464 VFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRAXXXXXXXXXXXXXXVYHFAVEE 643
           V ++N T LE+ L +++S    Y AVL YA WCPFSR               V+H A+EE
Sbjct: 1   VVQLNETTLEKALDLVHSSNGTYMAVLHYATWCPFSRQVRPVYDVLSTIFPTVHHVAIEE 60

Query: 644 S 646
           S
Sbjct: 61  S 61


>tr|A9NUT7|A9NUT7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 317

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 37/117 (31%), Positives = 45/117 (38%), Gaps = 2/117 (1%)
 Frame = +2

Query: 302 LAFLLLGWPVCFGSPLTSISTICERPRLEGVVENNWCPTDHDYELQTKV--FPKRGVFEV 475
           L F L+G  V    PL      C  P L+    N     D D          P R V E+
Sbjct: 9   LQFSLMGMAVA--GPLG----FCPIPNLQDTFSNKCMAFDSDSPSHGAAGFLPDR-VREL 61

Query: 476 NGTDLERYLHVLNSRETMYAAVLVYARWCPFSRAXXXXXXXXXXXXXXVYHFAVEES 646
           +   LE    +L      Y AVL YA WCPFS+               ++H AVEES
Sbjct: 62  DAVSLEAAFDILQRSSNTYIAVLFYASWCPFSKQCRPVFNVLSSMFPTIHHVAVEES 118


>tr|Q5EUC7|Q5EUC7_MAIZE Adenosine 5'-phosphosulfate reductase 3
           (Putative uncharacterized protein) OS=Zea mays GN=APRL3
           PE=2 SV=1
          Length = 323

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 23/65 (35%), Positives = 34/65 (52%)
 Frame = +2

Query: 461 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRAXXXXXXXXXXXXXXVYHFAVE 640
           GV E +   L R +++L++ +  Y AVL YA WCPFS+               + HFA E
Sbjct: 63  GVIEGDEVTLARAVNLLHANKDDYIAVLFYASWCPFSQECKPNFETLAYLFPAIRHFAFE 122

Query: 641 ESVLQ 655
           ES ++
Sbjct: 123 ESAIR 127


>tr|B6TY43|B6TY43_MAIZE APRL3-Zea mays adenosine 5'-phosphosulfate
           reductase-like OS=Zea mays PE=2 SV=1
          Length = 324

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 23/65 (35%), Positives = 34/65 (52%)
 Frame = +2

Query: 461 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRAXXXXXXXXXXXXXXVYHFAVE 640
           GV E +   L R +++L++ +  Y AVL YA WCPFS+               + HFA E
Sbjct: 64  GVIEGDEVTLARAVNLLHANKDDYIAVLFYASWCPFSQECKPNFETLAYLFPAIRHFAFE 123

Query: 641 ESVLQ 655
           ES ++
Sbjct: 124 ESAIR 128


>tr|B4FL05|B4FL05_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 188

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 23/65 (35%), Positives = 34/65 (52%)
 Frame = +2

Query: 461 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRAXXXXXXXXXXXXXXVYHFAVE 640
           GV E +   L R +++L++ +  Y AVL YA WCPFS+               + HFA E
Sbjct: 63  GVIEGDEVTLARAVNLLHANKDDYIAVLFYASWCPFSQECKPNFETLAYLFPAIRHFAFE 122

Query: 641 ESVLQ 655
           ES ++
Sbjct: 123 ESAIR 127


>tr|Q67VZ8|Q67VZ8_ORYSJ Os06g0220800 protein OS=Oryza sativa subsp.
           japonica GN=P0516A04.7 PE=2 SV=1
          Length = 282

 Score = 43.9 bits (102), Expect = 0.009
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = +2

Query: 461 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRAXXXXXXXXXXXXXXVYHFAVE 640
           GV E +   L R +++L++ +  +AAVL YA WCPFS+               + H A+E
Sbjct: 51  GVTEGDDAILARAVNLLHANKEDFAAVLFYASWCPFSQECRLRFEKLACIFPTIRHLAIE 110

Query: 641 ESVLQ 655
           ES ++
Sbjct: 111 ESTVR 115


>tr|B8B416|B8B416_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22194 PE=4 SV=1
          Length = 282

 Score = 43.9 bits (102), Expect = 0.009
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = +2

Query: 461 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRAXXXXXXXXXXXXXXVYHFAVE 640
           GV E +   L R +++L++ +  +AAVL YA WCPFS+               + H A+E
Sbjct: 51  GVTEGDDAILARAVNLLHANKEDFAAVLFYASWCPFSQECRLRFEKLACIFPTIRHLAIE 110

Query: 641 ESVLQ 655
           ES ++
Sbjct: 111 ESTVK 115


>tr|A7NUY1|A7NUY1_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015227001
           PE=4 SV=1
          Length = 321

 Score = 42.7 bits (99), Expect = 0.019
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = +2

Query: 461 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRAXXXXXXXXXXXXXXVYHFAVE 640
           GV E +   L++ L +++     Y AVL YA WC FSR               + HFA+E
Sbjct: 63  GVTEGDEVSLQKALDMVHKNTHEYVAVLFYASWCAFSRTCRPTFSILSSLYPSMPHFAIE 122

Query: 641 ESVLQ 655
           ES ++
Sbjct: 123 ESAVR 127


>tr|Q84P95|Q84P95_ORYSJ Os02g0754900 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0754900 PE=2 SV=1
          Length = 311

 Score = 42.4 bits (98), Expect = 0.025
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = +2

Query: 461 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRAXXXXXXXXXXXXXXVYHFAVE 640
           GV E +   L + + +L+  +  Y AVL YA WCPFS+               + HFA E
Sbjct: 56  GVIEGDEVTLAKAITLLHMNKDDYIAVLFYASWCPFSQECKPNFEILASLFPSIRHFAFE 115

Query: 641 ESVLQ 655
           ES ++
Sbjct: 116 ESSIR 120


>tr|Q5EUC6|Q5EUC6_MAIZE Adenosine 5'-phosphosulfate reductase 4
           OS=Zea mays GN=APRL4 PE=2 SV=1
          Length = 321

 Score = 42.4 bits (98), Expect = 0.025
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = +2

Query: 461 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRAXXXXXXXXXXXXXXVYHFAVE 640
           GV E +   L   +++L++ +  Y AVL YA WCPFS+               + HFA E
Sbjct: 59  GVVEGDEFTLATAVNLLHANKDDYIAVLFYASWCPFSQECKPNFETLASLFPTIRHFAFE 118

Query: 641 ESVLQ 655
           ES ++
Sbjct: 119 ESAIR 123