DK960722 |
Clone id |
TST39A01NGRL0008_C23 |
Library |
TST39 |
Length |
637 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_C23. 5' end sequence. |
Accession |
DK960722 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL6Contig1 |
Sequence |
GAACGAGCAGGTGACGGTAGGAGCAAGGAGGATCAAGAAGAAGAAAGAGAAGAAGAAGCC ATGGCTGCCGTCTCTGCTTCTACTCTCAGCCTCGGTGGCGGCCACTGCCCCCGCTGCTTC TCTGAAGTCGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTCCCTCTCTCCTAAGCT ATCCGCCCGCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGATCTCGACCAAAACTCC CTTGGGACCTTCCGGCGATACCAAATTCAAGGGTAACCTGGATGCCTCTGGTCGCAAAGC TGAGGGAAAGGGAGTCTACCAATATACCAGGAAGTATGGTGCTAATGTCGATGGATACAG CCCTATCTATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTAC TGGATTGGCTATCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGGTGCCCTCTTAGT GTACAACACCAGTGCCCTTGCTCAATGATTGCTTTTGTATGTTAATGAGGTGAATCCTGA ATTCTGACACACTATGCGTCTTCCATGTCTCACCTATAGCCTTGTATATTCTGACAGTCA TGAGAATGAAAAAGTGTAGCTCCTTGTGAATTGCAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
121 |
Score (bit) |
135.0 |
E-value |
2.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960722|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_C23, 5' (637 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 135 2e-31 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 134 4e-31 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 133 9e-31 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 132 2e-30 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 131 3e-30 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 127 6e-29 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 125 2e-28
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 135 bits (340), Expect = 2e-31 Identities = 69/121 (57%), Positives = 82/121 (67%) Frame = +2
Query: 143 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAEGKGVYQ 322 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK +GKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 323 YTRKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 502 Y KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
Query: 503 Q 505 Q Sbjct: 138 Q 138
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 134 bits (337), Expect = 4e-31 Identities = 69/119 (57%), Positives = 81/119 (68%) Frame = +2
Query: 149 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAEGKGVYQYT 328 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK +GKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 329 RKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 505 KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 133 bits (334), Expect = 9e-31 Identities = 67/119 (56%), Positives = 82/119 (68%) Frame = +2
Query: 149 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAEGKGVYQYT 328 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK +GKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 329 RKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 505 KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVT V+NTSALAQ Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 132 bits (332), Expect = 2e-30 Identities = 69/119 (57%), Positives = 79/119 (66%) Frame = +2
Query: 149 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAEGKGVYQYT 328 V+G+PSLS S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 329 RKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 505 KYGANVDGYSPIY EEW+ +GD YA G TGL IWAVT VYNTSALAQ Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 131 bits (329), Expect = 3e-30 Identities = 68/121 (56%), Positives = 80/121 (66%) Frame = +2
Query: 143 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAEGKGVYQ 322 + +G+PSL+ + S S RI ASGVKKI T P G +G + +DASGRK +G GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 323 YTRKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 502 + KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
Query: 503 Q 505 Q Sbjct: 141 Q 141
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 127 bits (318), Expect = 6e-29 Identities = 67/118 (56%), Positives = 77/118 (65%) Frame = +2
Query: 152 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAEGKGVYQYTR 331 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGRK +G GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 332 KYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 505 KYGANVDGYSPIY EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 125 bits (313), Expect = 2e-28 Identities = 70/125 (56%), Positives = 76/125 (60%), Gaps = 11/125 (8%) Frame = +2
Query: 161 PSLSPKL----------SAR-SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAEG 307 PS SP L SAR SL I A KK+ T P GP G FK +DASGR A+G Sbjct: 13 PSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKG 72
Query: 308 KGVYQYTRKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYN 487 KGVYQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVT VY+ Sbjct: 73 KGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYS 132
Query: 488 TSALA 502 TSALA Sbjct: 133 TSALA 137
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NK29 |
Definition |
tr|A9NK29|A9NK29_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
124 |
Score (bit) |
141.0 |
E-value |
4.0e-32 |
Report |
|