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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960727
Clone id TST39A01NGRL0008_D04
Library
Length 574
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_D04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGAGATGGAGCCTGTAGGGTTTGTTGGTATCATCAAGCTCACCGCCCTGATAATTCACA
GGAACTCGAAGCATTTTCTGTGCATTGCAGTCATACTAGCTCTCCCTGCTGCTCTGCAGG
CACTTCTACTGGATACCTCGGGCTCGATCAGACAGTTTCTAGCCTCCATATCCTACCTGT
ACAAGCTTCTGGACGGTAAACTGCCGCCGCCAGCTGTGATCGACCCCTCGGCCTTTGACA
GGGGCTCGCAACCCCATGGAGCTCATAAGGTCGCGCTGGAGGTGGCCCTGATCGCCTTCT
CTCTTGTGGTGGCTTTCACGTGCACGCCGCTGCTAACATTTAGTGCGTGCAGGGCGGTCC
TGGGGAAGAGCGTGGATATGAGAGGGTCTGCAAGGGGGATATGGCGGTCGGTGGGAAAGC
TGGTGGTGACGATTCTGTGCCTGGTGGCGGCGATGATGGTGGGCCTGGTAGCGGCGATGG
TGGCGGTGGCAGTGGGGACTGCGGTGGTTGGAGGCACTCTAGGAGCGGTTATAAGCGTAG
CTGGAGTATCAGTGGTTGGCGCTGGGCTCGTCTA
■■Homology search results ■■ -
sp_hit_id Q214R1
Definition sp|Q214R1|ISPDF_RHOPB Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas palustris (strain BisB18)
Align length 62
Score (bit) 33.1
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960727|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_D04, 5'
         (574 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q214R1|ISPDF_RHOPB Bifunctional enzyme ispD/ispF OS=Rhodopseu...    33   1.0  
sp|Q137C3|ISPDF_RHOPS Bifunctional enzyme ispD/ispF OS=Rhodopseu...    33   1.3  
sp|Q6N6M5|ISPDF_RHOPA Bifunctional enzyme ispD/ispF OS=Rhodopseu...    32   2.3  
sp|Q9BE71|LRFN2_MACFA Leucine-rich repeat and fibronectin type-I...    32   2.9  
sp|Q9ULH4|LRFN2_HUMAN Leucine-rich repeat and fibronectin type-I...    32   2.9  
sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=O...    31   5.1  
sp|P49281|NRAM2_HUMAN Natural resistance-associated macrophage p...    30   6.5  
sp|Q8R2H1|IKBL1_RAT NF-kappa-B inhibitor-like protein 1 OS=Rattu...    30   6.5  
sp|Q9JKA7|HCN4_RAT Potassium/sodium hyperpolarization-activated ...    30   6.6  
sp|O70507|HCN4_MOUSE Potassium/sodium hyperpolarization-activate...    30   6.6  
sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thali...    30   6.6  
sp|Q8IYW2|CJ092_HUMAN Uncharacterized protein C10orf92 OS=Homo s...    30   6.6  
sp|P13709|FSH_DROME Homeotic protein female sterile OS=Drosophil...    30   8.5  
sp|Q2IW23|ISPDF_RHOP2 Bifunctional enzyme ispD/ispF OS=Rhodopseu...    30   8.6  

>sp|Q214R1|ISPDF_RHOPB Bifunctional enzyme ispD/ispF
           OS=Rhodopseudomonas palustris (strain BisB18) GN=ispDF
           PE=3 SV=1
          Length = 398

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = -1

Query: 397 PLADPLISTLFPRTALHALNVSSGVHVKATT--------REKAIRATSSATL*APWGCEP 242
           PL +P+   +   T L    ++    VKATT        RE+ I AT+SATL  PWG   
Sbjct: 340 PLREPMRQRIAEITGLPVARIA----VKATTSERLGFTGREEGIAATASATLRLPWGTNG 395

Query: 241 LS 236
           L+
Sbjct: 396 LA 397


>sp|Q137C3|ISPDF_RHOPS Bifunctional enzyme ispD/ispF
           OS=Rhodopseudomonas palustris (strain BisB5) GN=ispDF
           PE=3 SV=1
          Length = 398

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
 Frame = -1

Query: 331 SGVHVKATT--------REKAIRATSSATL*APWGCEPLS 236
           S + VKATT        RE+ I AT+SAT+  PWG E L+
Sbjct: 358 SRIAVKATTSERLGFTGREEGIAATASATIRLPWGAEGLA 397


>sp|Q6N6M5|ISPDF_RHOPA Bifunctional enzyme ispD/ispF
           OS=Rhodopseudomonas palustris GN=ispDF PE=3 SV=1
          Length = 398

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
 Frame = -1

Query: 331 SGVHVKATT--------REKAIRATSSATL*APWGCEPLS 236
           S V VKATT        RE+ I AT+SAT+  PWG + L+
Sbjct: 358 SRVAVKATTSEKLGFTGREEGIAATASATIRLPWGADGLA 397


>sp|Q9BE71|LRFN2_MACFA Leucine-rich repeat and fibronectin type-III
           domain-containing protein 2 OS=Macaca fascicularis
           GN=LRFN2 PE=2 SV=1
          Length = 789

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 25/82 (30%), Positives = 39/82 (47%)
 Frame = +3

Query: 162 ASISYLYKLLDGKLPPPAVIDPSAFDRGSQPHGAHKVALEVALIAFSLVVAFTCTPLLTF 341
           A++S +Y   +G  PPP    PS+   G+ P G  KV +   L+ F+  +A       + 
Sbjct: 570 AAVSNVYSQTNGAQPPP----PSSAPAGAPPQGPPKVVVRNELLDFTASLA-----RASD 620

Query: 342 SACRAVLGKSVDMRGSARGIWR 407
           S+  + LG S +  G  R  WR
Sbjct: 621 SSSSSSLG-SGEAAGLGRAPWR 641


>sp|Q9ULH4|LRFN2_HUMAN Leucine-rich repeat and fibronectin type-III
           domain-containing protein 2 OS=Homo sapiens GN=LRFN2
           PE=1 SV=2
          Length = 789

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 25/82 (30%), Positives = 39/82 (47%)
 Frame = +3

Query: 162 ASISYLYKLLDGKLPPPAVIDPSAFDRGSQPHGAHKVALEVALIAFSLVVAFTCTPLLTF 341
           A++S +Y   +G  PPP    PS+   G+ P G  KV +   L+ F+  +A       + 
Sbjct: 570 AAVSNVYSQTNGAQPPP----PSSAPAGAPPQGPPKVVVRNELLDFTASLA-----RASD 620

Query: 342 SACRAVLGKSVDMRGSARGIWR 407
           S+  + LG S +  G  R  WR
Sbjct: 621 SSSSSSLG-SGEAAGLGRAPWR 641


>sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50
           OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2
           SV=2
          Length = 641

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 299 LSCGGFHVHAAANI*CVQGGPGEE-RGYERV 388
           LSCGG     AA     +GG GEE RGYERV
Sbjct: 27  LSCGGARRSWAAAAATAEGGGGEEGRGYERV 57


>sp|P49281|NRAM2_HUMAN Natural resistance-associated macrophage
           protein 2 OS=Homo sapiens GN=SLC11A2 PE=1 SV=2
          Length = 568

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 300 SLVVAFTCTPLLTFSACRAVLGKSVDMRGSARGIWRSVGKLVVTILC 440
           SL + F   P+LTF++ R V+    +  G     WR  G ++V I+C
Sbjct: 447 SLQLPFALIPILTFTSLRPVMSDFANGLG-----WRIAGGILVLIIC 488


>sp|Q8R2H1|IKBL1_RAT NF-kappa-B inhibitor-like protein 1 OS=Rattus
           norvegicus GN=Nfkbil1 PE=2 SV=2
          Length = 381

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 332 QRRARESHHKREGDQGHLQRDLMSSMGLRAPVKGRGVDHSWRRQFTVQKL 183
           +R ARE   K+       +R  + + G R P +  G  HSWR+Q   Q+L
Sbjct: 203 ERLAREHAQKQ-------RRQQLEAEGSRRPPRAEGSSHSWRQQEEEQRL 245


>sp|Q9JKA7|HCN4_RAT Potassium/sodium hyperpolarization-activated
            cyclic nucleotide-gated channel 4 OS=Rattus norvegicus
            GN=Hcn4 PE=2 SV=1
          Length = 1198

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
 Frame = -2

Query: 405  AISPLQTLSYPRSSPGPPCTH*-------------MLAAACT*KPPQERRRSGPPPARPY 265
            A +P   LS P  SPGPP T               +L  A +  PPQ  +R G PP  P 
Sbjct: 1016 AFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPG 1075

Query: 264  EL 259
             L
Sbjct: 1076 RL 1077


>sp|O70507|HCN4_MOUSE Potassium/sodium hyperpolarization-activated
            cyclic nucleotide-gated channel 4 OS=Mus musculus GN=Hcn4
            PE=1 SV=2
          Length = 1186

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
 Frame = -2

Query: 405  AISPLQTLSYPRSSPGPPCTH*-------------MLAAACT*KPPQERRRSGPPPARPY 265
            A +P   LS P  SPGPP T               +L  A +  PPQ  +R G PP  P 
Sbjct: 1003 AFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPG 1062

Query: 264  EL 259
             L
Sbjct: 1063 RL 1064
tr_hit_id Q6Z8B3
Definition tr|Q6Z8B3|Q6Z8B3_ORYSJ Extensin class 1-like OS=Oryza sativa subsp. japonica
Align length 59
Score (bit) 37.0
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960727|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_D04, 5'
         (574 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6Z8B3|Q6Z8B3_ORYSJ Extensin class 1-like OS=Oryza sativa sub...    37   0.77 
tr|A8XL03|A8XL03_CAEBR Putative uncharacterized protein OS=Caeno...    37   1.0  
tr|A9F3U7|A9F3U7_SORC5 Transcriptional regulator, AraC family OS...    36   1.7  
tr|A8CWM6|A8CWM6_9CHLR Elongation factor G, domain IV OS=Dehaloc...    35   3.0  
tr|P89466|P89466_HHV2 Tegument protein OS=Human herpesvirus 2 GN...    35   3.8  
tr|A8J6J7|A8J6J7_CHLRE Predicted protein OS=Chlamydomonas reinha...    35   3.8  
tr|Q73GS5|Q73GS5_WOLPM Type IV secretion system protein VirB6 OS...    35   3.9  
tr|Q4ECQ8|Q4ECQ8_9RICK Type IV secretion system protein VirB6 OS...    35   3.9  
tr|Q09J83|Q09J83_WOLPI Vir-like protein B6 OS=Wolbachia pipienti...    35   3.9  
tr|A4ULJ6|A4ULJ6_WOLPI Vir-like protein B6 OS=Wolbachia pipienti...    35   3.9  
tr|Q8BSC6|Q8BSC6_MOUSE Putative uncharacterized protein (Fragmen...    34   5.0  
tr|Q69PS1|Q69PS1_ORYSJ Putative uncharacterized protein OSJNBb00...    34   5.0  
tr|Q0E424|Q0E424_ORYSJ Os02g0140100 protein OS=Oryza sativa subs...    34   5.0  
tr|A8HQE4|A8HQE4_CHLRE Predicted protein OS=Chlamydomonas reinha...    34   5.0  
tr|A7LK18|A7LK18_HHV2 VP11/12 OS=Human herpesvirus 2 GN=UL46 PE=...    34   6.5  
tr|Q08TT5|Q08TT5_STIAU Putative uncharacterized protein OS=Stigm...    33   8.6  
tr|Q5N8E6|Q5N8E6_ORYSJ Putative uncharacterized protein P0692C11...    33   8.6  
tr|Q0JPJ2|Q0JPJ2_ORYSJ Os01g0219900 protein (Fragment) OS=Oryza ...    33   8.6  
tr|B4WBZ0|B4WBZ0_9CAUL Cytochrome C biogenesis protein transmemb...    33   8.6  

>tr|Q6Z8B3|Q6Z8B3_ORYSJ Extensin class 1-like OS=Oryza sativa subsp.
           japonica GN=P0470A03.23 PE=4 SV=1
          Length = 272

 Score = 37.0 bits (84), Expect = 0.77
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 399 SPLQTLSYPRS-SPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYELHGVASPCQRPR 226
           +P+QT   P   +P PPC      AAC   PP   R S PPP  P  L   A+ C+R R
Sbjct: 178 APMQTPPPPPGPAPLPPC------AACWPPPPSPLRASTPPPPGPAPLPPFAACCRRRR 230


>tr|A8XL03|A8XL03_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG14923 PE=4 SV=1
          Length = 1423

 Score = 36.6 bits (83), Expect = 1.0
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = -2

Query: 399 SPLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYELHGVASPCQRPRGR 220
           SP+Q     R SP PP      +A    + P  RRRS P P R  + H ++     PR R
Sbjct: 427 SPIQKRKPSRRSPSPPRRRRSPSAT---RSPARRRRSSPSPIRGKKNHHMSPSASPPRRR 483

Query: 219 SQLAAAVYRPEACTGRIW 166
                +  R  + + ++W
Sbjct: 484 RDQTKSPVRDRSESPKMW 501


>tr|A9F3U7|A9F3U7_SORC5 Transcriptional regulator, AraC family
           OS=Sorangium cellulosum (strain So ce56) GN=sce4453 PE=4
           SV=1
          Length = 281

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -2

Query: 408 TAISPLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYEL--HGVASP-- 241
           TA   L T + P S+P  P +   + AAC+   P     SG P ARP  L  HGVA+P  
Sbjct: 85  TAGEVLVTTALPISTPIAPSSSHSMPAACSLSVP-----SGAPAARPASLPAHGVAAPSH 139

Query: 240 -CQRPRGRSQLAAA 202
             Q PR R+    A
Sbjct: 140 GAQLPRERAVATGA 153


>tr|A8CWM6|A8CWM6_9CHLR Elongation factor G, domain IV
           OS=Dehalococcoides sp. VS GN=DeVSDRAFT_0325 PE=4 SV=1
          Length = 652

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 28/91 (30%), Positives = 37/91 (40%)
 Frame = -3

Query: 410 RPPYPPCRPSHIHALPQDRPARTKC*QRRARESHHKREGDQGHLQRDLMSSMGLRAPVKG 231
           RP   P  P H H   +   A     +RRA    H+  G   H  RD   ++  RA  +G
Sbjct: 22  RPDRTP--PRHHHRRGRRAGALDAARRRRASPDRHRHPGP--HRLRDRSRTLAARARRRG 77

Query: 230 RGVDHSWRRQFTVQKLVQVGYGG*KLSDRAR 138
           RGV    RR   +   V  G    + +DR R
Sbjct: 78  RGVQRRRRRAAAIGNRVAPGAPPRRAADRVR 108


>tr|P89466|P89466_HHV2 Tegument protein OS=Human herpesvirus 2
           GN=UL46 PE=4 SV=1
          Length = 722

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = -2

Query: 369 SSPGPPCTH*MLAAACT*KPPQERRRSGPPP---ARPYELHGVASPCQRPR----GRSQL 211
           ++ GPP     +  +C  K  + RR + PPP   ARP+        C+R R        +
Sbjct: 425 AASGPPGGRGAVGGSCRDKIQRTRRDNAPPPLPRARPHSTPAAPRRCRRHREDLPEPPHV 484

Query: 210 AAAVYRPEACTGR--IWRLETV*SSPRYPVEVPA 115
            AA   PE C GR   +      + PR P   PA
Sbjct: 485 DAADRGPEPCAGRPATYYTHMAGAPPRLPPRNPA 518


>tr|A8J6J7|A8J6J7_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_192466 PE=4 SV=1
          Length = 539

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = -2

Query: 396 PLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPYELHGVASPCQRPRG 223
           P Q   YP S+PG P    +  A     PPQ++    PP  +PY     A P Q+P G
Sbjct: 325 PQQPYGYPYSAPGYPAAQPLYGA-----PPQQQPYCAPPQQQPYG----APPQQQPYG 373


>tr|Q73GS5|Q73GS5_WOLPM Type IV secretion system protein VirB6
           OS=Wolbachia pipientis wMel GN=WD_0857 PE=4 SV=1
          Length = 851

 Score = 34.7 bits (78), Expect = 3.9
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 231 AFDRGSQPH-GAHKVALEVALIAFSLVVAFTCTPLLTFSACRAVLGKSVDMRGSARGIWR 407
           +F R S P  GA K A  +A IA ++   FT   L+  SA        V M  +  G+W+
Sbjct: 48  SFSRASNPDCGAFKTAAALAGIAIAVGAIFTGIVLIVSSAGLFTALVIVGMIAAIVGVWK 107

Query: 408 SVGKLVV 428
           ++G LVV
Sbjct: 108 AIGGLVV 114


>tr|Q4ECQ8|Q4ECQ8_9RICK Type IV secretion system protein VirB6
           OS=Wolbachia endosymbiont of Drosophila ananassae
           GN=WwAna1498 PE=4 SV=1
          Length = 246

 Score = 34.7 bits (78), Expect = 3.9
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 231 AFDRGSQPH-GAHKVALEVALIAFSLVVAFTCTPLLTFSACRAVLGKSVDMRGSARGIWR 407
           +F R S P  GA K A  +A IA ++   FT   L+  SA        V M  +  G+W+
Sbjct: 48  SFSRASNPDCGAFKTAAALAGIAIAVGAIFTGIVLIVSSAGLFTALVIVGMIAAIVGVWK 107

Query: 408 SVGKLVV 428
           ++G LVV
Sbjct: 108 AIGGLVV 114


>tr|Q09J83|Q09J83_WOLPI Vir-like protein B6 OS=Wolbachia pipientis
           PE=4 SV=2
          Length = 854

 Score = 34.7 bits (78), Expect = 3.9
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 231 AFDRGSQPH-GAHKVALEVALIAFSLVVAFTCTPLLTFSACRAVLGKSVDMRGSARGIWR 407
           +F R S P  GA K A  +A IA ++   FT   L+  SA        V M  +  G+W+
Sbjct: 48  SFSRASNPDCGAFKTAAALAGIAIAVGAIFTGIVLIVSSAGLFTALVIVGMIAAIVGVWK 107

Query: 408 SVGKLVV 428
           ++G LVV
Sbjct: 108 AIGGLVV 114


>tr|A4ULJ6|A4ULJ6_WOLPI Vir-like protein B6 OS=Wolbachia pipientis
           PE=4 SV=1
          Length = 854

 Score = 34.7 bits (78), Expect = 3.9
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 231 AFDRGSQPH-GAHKVALEVALIAFSLVVAFTCTPLLTFSACRAVLGKSVDMRGSARGIWR 407
           +F R S P  GA K A  +A IA ++   FT   L+  SA        V M  +  G+W+
Sbjct: 48  SFSRASNPDCGAFKTAAALAGIAIAVGAIFTGIVLIVSSAGLFTALVIVGMIAAIVGVWK 107

Query: 408 SVGKLVV 428
           ++G LVV
Sbjct: 108 AIGGLVV 114