DK960739 |
Clone id |
TST39A01NGRL0008_D16 |
Library |
TST39 |
Length |
596 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_D16. 5' end sequence. |
Accession |
DK960739 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GCAGCTTTGTGAACCAGAAGAAGCTCGTTGCTGGCGATGCGATAGTATTTTTGAGAAGTG CATCAGGAGAGCTATGTGTAGGTGTGCGTCGCTCAGCAAAAGGTGGCACTGGAGGTGGTG GTGGTGGAGCGGGCATGGCGATAGACTCATCCCCTCGGCATATCTCTCATATGTCCTCCC AGCAAGCATCACGATGGGAGCCAAAGTCCTTGGAGTCGCCATATGACTTTTTTGGTATAT GTAGGGACGGGTCTATGCGAGCCTCTCGAACAAGTTCTGATAACATGACAAATTTTGCTC GTAACCGAGCCCGTGTTACAGCAAGTGCTGTCCTTGAAGCAGCAACCTTGGCAGCATCGA ATGAGCCCTTCGAGGTCGTCTACTATCCCAGAGCTACTATTTCTGAGTTTTGTGTCAAGG CGAGTGTGGTGAAGGCATCTCTACAGCAGAACTGGGCTCCTGGGATGCGGTTTAAGATGG CTGTAGAGACTGAGGATGCGTCCCGCATCAGCTGGTTCATGGGTACAATAGCCAAAGTGC AAGAGGCTGACTCGCTACGCTGGCCCAACTCTCCTTGGAAAATGCTGCAGGTTACT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q653H7 |
Definition |
sp|Q653H7|ARFR_ORYSJ Auxin response factor 18 OS=Oryza sativa subsp. japonica |
Align length |
202 |
Score (bit) |
151.0 |
E-value |
3.0e-36 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TP93 |
Definition |
tr|A9TP93|A9TP93_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
198 |
Score (bit) |
177.0 |
E-value |
3.0e-43 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960739|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_D16, 5' (596 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TP93|A9TP93_PHYPA Predicted protein (Fragment) OS=Physcomit... 177 3e-43 tr|A9TVW0|A9TVW0_PHYPA Predicted protein OS=Physcomitrella paten... 171 2e-41 tr|B6DXL3|B6DXL3_MALDO Putative auxin response factor ARF16 OS=M... 163 8e-39 tr|A7PI39|A7PI39_VITVI Chromosome chr13 scaffold_17, whole genom... 154 3e-36 tr|A7NZK3|A7NZK3_VITVI Chromosome chr6 scaffold_3, whole genome ... 154 4e-36 tr|A4L9W4|A4L9W4_GOSHI Auxin response factor 3 OS=Gossypium hirs... 153 8e-36 tr|A5BUC2|A5BUC2_VITVI Putative uncharacterized protein OS=Vitis... 152 1e-35 tr|B8B1S2|B8B1S2_ORYSI Putative uncharacterized protein OS=Oryza... 151 3e-35 tr|B7EQA3|B7EQA3_ORYSJ cDNA clone:J023079H12, full insert sequen... 151 3e-35 tr|A3BES8|A3BES8_ORYSJ Putative uncharacterized protein OS=Oryza... 151 3e-35 tr|A7PT37|A7PT37_VITVI Chromosome chr8 scaffold_29, whole genome... 150 4e-35 tr|B4FP29|B4FP29_MAIZE Putative uncharacterized protein OS=Zea m... 150 5e-35 tr|B8AFR0|B8AFR0_ORYSI Putative uncharacterized protein OS=Oryza... 149 1e-34 tr|B7FA46|B7FA46_ORYSJ cDNA, clone: J100044L04, full insert sequ... 149 1e-34 tr|A3A992|A3A992_ORYSJ Putative uncharacterized protein OS=Oryza... 149 1e-34 tr|Q52H28|Q52H28_GOSRA Putative auxin response factor 10 OS=Goss... 146 1e-33 tr|B8BHI0|B8BHI0_ORYSI Putative uncharacterized protein OS=Oryza... 141 2e-32 tr|A3C5S9|A3C5S9_ORYSJ Putative uncharacterized protein OS=Oryza... 141 2e-32 tr|B8AS27|B8AS27_ORYSI Putative uncharacterized protein OS=Oryza... 135 2e-30 tr|Q2HV56|Q2HV56_MEDTR Transcriptional factor B3; Auxin response... 121 3e-26 tr|A2Q1Q6|A2Q1Q6_MEDTR Auxin response factor OS=Medicago truncat... 103 7e-21 tr|A5AXD9|A5AXD9_VITVI Putative uncharacterized protein OS=Vitis... 102 1e-20 tr|Q6L8U3|Q6L8U3_CUCSA Auxin response factor 1 OS=Cucumis sativu... 73 1e-11 tr|Q3Y6G5|Q3Y6G5_GOSAR Auxin response factor 2 OS=Gossypium arbo... 73 1e-11 tr|A2Q532|A2Q532_MEDTR Transcriptional factor B3; Auxin response... 70 7e-11 tr|A7PFD6|A7PFD6_VITVI Chromosome chr11 scaffold_14, whole genom... 69 2e-10 tr|Q5IRX8|Q5IRX8_ARATH ARF7 OS=Arabidopsis thaliana GN=ARF7 PE=2... 69 3e-10 tr|B8LRW7|B8LRW7_PICSI Putative uncharacterized protein OS=Picea... 68 3e-10 tr|A2ZMP7|A2ZMP7_ORYSI Putative uncharacterized protein OS=Oryza... 68 3e-10 tr|Q5IRX7|Q5IRX7_ARATH ARF8 OS=Arabidopsis thaliana GN=At5g37020... 68 5e-10
>tr|A9TP93|A9TP93_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_148548 PE=4 SV=1 Length = 420
Score = 177 bits (450), Expect = 3e-43 Identities = 100/198 (50%), Positives = 123/198 (62%) Frame = +3
Query: 3 SFVNQKKLVAGDAIVFLRSASGELCVGVRRSAKXXXXXXXXXXXMAIDSSPRHISHMSSQ 182 +FVNQKKLVAGDAIVFLR ASGELCVGVRRS + +S+ Sbjct: 198 TFVNQKKLVAGDAIVFLRIASGELCVGVRRSMRG----------------------VSNG 235
Query: 183 QASRWEPKSLESPYDFFGICRDGSMRASRTSSDNMTNFARNRARXXXXXXXXXXXXXXXN 362 ++S W S S G + S+R+ S ++FAR+RAR Sbjct: 236 ESSSWH--SSISGVGDNGYALNSSIRSENQGSPTTSSFARDRARVTAKSVLEAAALAVSG 293
Query: 363 EPFEVVYYPRATISEFCVKASVVKASLQQNWAPGMRFKMAVETEDASRISWFMGTIAKVQ 542 E FEVVYYPRA+ +EFCVKA +VK +L+Q+W GMRFKMA ETED+SRISWFMGTIA VQ Sbjct: 294 ERFEVVYYPRASTAEFCVKAGLVKRALEQSWYAGMRFKMAFETEDSSRISWFMGTIAAVQ 353
Query: 543 EADSLRWPNSPWKMLQVT 596 AD + WP+SPW++LQVT Sbjct: 354 AADPVLWPSSPWRVLQVT 371
>tr|A9TVW0|A9TVW0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_108888 PE=4 SV=1 Length = 595
Score = 171 bits (434), Expect = 2e-41 Identities = 100/194 (51%), Positives = 112/194 (57%) Frame = +3
Query: 3 SFVNQKKLVAGDAIVFLRSASGELCVGVRRSAKXXXXXXXXXXXMAIDSSPRHISHMSSQ 182 +FVNQKKLVAGDAIVFLRSASGELCVGVRRS + H S Sbjct: 183 TFVNQKKLVAGDAIVFLRSASGELCVGVRRSMRGAMGDN---------------GHGGSS 227
Query: 183 QASRWEPKSLESPYDFFGICRDGSMRASRTSSDNMTNFARNRARXXXXXXXXXXXXXXXN 362 G+ R GS AS TSS FARNRAR Sbjct: 228 N----------------GVSRSGSQGASTTSS-----FARNRARVTAKSVLDAAALAVAG 266
Query: 363 EPFEVVYYPRATISEFCVKASVVKASLQQNWAPGMRFKMAVETEDASRISWFMGTIAKVQ 542 +PFEVVYYPRA+ +EFCVKA +VK +L W GMRFKMA ETED+SRISWFMGTIA V+ Sbjct: 267 KPFEVVYYPRASTAEFCVKAGLVKQALDHTWYAGMRFKMAFETEDSSRISWFMGTIAAVK 326
Query: 543 EADSLRWPNSPWKM 584 AD L WPNSPW++ Sbjct: 327 PADPLLWPNSPWRV 340
>tr|B6DXL3|B6DXL3_MALDO Putative auxin response factor ARF16 OS=Malus domestica PE=2 SV=1 Length = 702
Score = 163 bits (412), Expect = 8e-39 Identities = 90/204 (44%), Positives = 116/204 (56%), Gaps = 6/204 (2%) Frame = +3
Query: 3 SFVNQKKLVAGDAIVFLRSASGELCVGVRRSAKXXXXXXXXXXXMAIDSSPRHISHMSSQ 182 +FVN KKLV+GD+IVFLR+ +G+LCVG+RR+ + S+ Sbjct: 192 TFVNHKKLVSGDSIVFLRAENGDLCVGIRRAKRGIGG--------------------GSE 231
Query: 183 QASRWEPK--SLESPYD-FFGICRDGS---MRASRTSSDNMTNFARNRARXXXXXXXXXX 344 +S W P + PY F R+ M+ + N + + Sbjct: 232 SSSGWNPMGGNCTVPYGGFSAFLREDENKLMKNGHGNGSNSNGSLMGKGKVGPESVFEAA 291
Query: 345 XXXXXNEPFEVVYYPRATISEFCVKASVVKASLQQNWAPGMRFKMAVETEDASRISWFMG 524 +PFEVVYYPRA+ EFCVKAS+VKA+LQ W PGMRFKMA ETED+SRISWFMG Sbjct: 292 TLAANGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWFMG 351
Query: 525 TIAKVQEADSLRWPNSPWKMLQVT 596 TI+ VQ A+ LRWP SPW++LQVT Sbjct: 352 TISSVQVAEPLRWPESPWRLLQVT 375
>tr|A7PI39|A7PI39_VITVI Chromosome chr13 scaffold_17, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018183001 PE=4 SV=1 Length = 683
Score = 154 bits (390), Expect = 3e-36 Identities = 87/201 (43%), Positives = 115/201 (57%), Gaps = 3/201 (1%) Frame = +3
Query: 3 SFVNQKKLVAGDAIVFLRSASGELCVGVRRSAKXXXXXXXXXXXMAIDSSPRHISHMSSQ 182 +FVN+K LVAGD+IVFLR+ +G+LCVG+RR+ + + + Sbjct: 188 NFVNKKNLVAGDSIVFLRAENGDLCVGIRRAKR---------------------AGCGPE 226
Query: 183 QASRWEPKSLE--SPY-DFFGICRDGSMRASRTSSDNMTNFARNRARXXXXXXXXXXXXX 353 S W P S SPY + G R+ R T S+ F R + R Sbjct: 227 SPSGWNPASGNGTSPYRGYSGFLREDENRPILTHSN--AGF-RGKGRVRAESVAEAATLA 283
Query: 354 XXNEPFEVVYYPRATISEFCVKASVVKASLQQNWAPGMRFKMAVETEDASRISWFMGTIA 533 +PF +VYYPRA+ EFCVKAS V+A++Q W PGM+FKMA ET+D+SRISWFMG I+ Sbjct: 284 ANGQPFVIVYYPRASTPEFCVKASSVRAAMQIQWCPGMKFKMAFETDDSSRISWFMGNIS 343
Query: 534 KVQEADSLRWPNSPWKMLQVT 596 V D +RWPNSPW++LQVT Sbjct: 344 SVHVNDPIRWPNSPWRLLQVT 364
>tr|A7NZK3|A7NZK3_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024547001 PE=4 SV=1 Length = 687
Score = 154 bits (389), Expect = 4e-36 Identities = 89/198 (44%), Positives = 112/198 (56%) Frame = +3
Query: 3 SFVNQKKLVAGDAIVFLRSASGELCVGVRRSAKXXXXXXXXXXXMAIDSSPRHISHMSSQ 182 +FVNQKKLVAGD+IVFLR+ +G+LCVG+RR+ + I P + Sbjct: 182 TFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKR------------GIAGGP--------E 221
Query: 183 QASRWEPKSLESPYDFFGICRDGSMRASRTSSDNMTNFARNRARXXXXXXXXXXXXXXXN 362 S W P S + + F S M N R R Sbjct: 222 SPSGWNPASPYAGFPKF---------LREDESKLMRNGVGRRVRPESVVEAATLAAN--G 270
Query: 363 EPFEVVYYPRATISEFCVKASVVKASLQQNWAPGMRFKMAVETEDASRISWFMGTIAKVQ 542 +PFEVVYYPRA+ EFCVKAS V+++++ W GMRFKM ETED+SRISWFMGTI+ VQ Sbjct: 271 QPFEVVYYPRASTPEFCVKASGVRSAVRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQ 330
Query: 543 EADSLRWPNSPWKMLQVT 596 AD +RWPNSPW++LQVT Sbjct: 331 VADPIRWPNSPWRLLQVT 348
>tr|A4L9W4|A4L9W4_GOSHI Auxin response factor 3 OS=Gossypium hirsutum GN=ARF3 PE=2 SV=1 Length = 647
Score = 153 bits (386), Expect = 8e-36 Identities = 85/198 (42%), Positives = 108/198 (54%) Frame = +3
Query: 3 SFVNQKKLVAGDAIVFLRSASGELCVGVRRSAKXXXXXXXXXXXMAIDSSPRHISHMSSQ 182 SFVN KKLVAGD+IVFLR+ +GELCVG+RR+ + D SP Sbjct: 182 SFVNHKKLVAGDSIVFLRAENGELCVGIRRAKRGNDTGAESGLGNGNDVSPYG------- 234
Query: 183 QASRWEPKSLESPYDFFGICRDGSMRASRTSSDNMTNFARNRARXXXXXXXXXXXXXXXN 362 F G ++ + +R S R + + Sbjct: 235 --------------GFSGFLKEDESKITRKRSP------RGKGKVRAEAVVEAVALAANG 274
Query: 363 EPFEVVYYPRATISEFCVKASVVKASLQQNWAPGMRFKMAVETEDASRISWFMGTIAKVQ 542 +PFE+VYYPRA+ EFCVKAS V+A+++ W MRFKMA ETED SRISWFMGT++ V Sbjct: 275 QPFEIVYYPRASTPEFCVKASAVRAAMRVPWCSLMRFKMAFETEDCSRISWFMGTVSSVH 334
Query: 543 EADSLRWPNSPWKMLQVT 596 AD LRWPNSPW++LQVT Sbjct: 335 IADPLRWPNSPWRLLQVT 352
>tr|A5BUC2|A5BUC2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024151 PE=4 SV=1 Length = 680
Score = 152 bits (385), Expect = 1e-35 Identities = 86/200 (43%), Positives = 114/200 (57%), Gaps = 3/200 (1%) Frame = +3
Query: 3 SFVNQKKLVAGDAIVFLRSASGELCVGVRRSAKXXXXXXXXXXXMAIDSSPRHISHMSSQ 182 +FVN+K LVAGD+IVFLR+ +G+LCVG+RR+ + + + Sbjct: 181 NFVNKKNLVAGDSIVFLRAENGDLCVGIRRAKR---------------------AGCGPE 219
Query: 183 QASRWEPKSLE--SPY-DFFGICRDGSMRASRTSSDNMTNFARNRARXXXXXXXXXXXXX 353 S W P S SPY + G R+ R T S+ F R + R Sbjct: 220 SPSGWNPASGNGTSPYRGYSGFLREDENRPILTHSN--AGF-RGKGRVRAESVAEAATLA 276
Query: 354 XXNEPFEVVYYPRATISEFCVKASVVKASLQQNWAPGMRFKMAVETEDASRISWFMGTIA 533 +PF +VYYPRA+ EFCVKAS V+A++Q W PGM+FKMA ET+D+SRISWFMG I+ Sbjct: 277 ANGQPFVIVYYPRASTPEFCVKASSVRAAMQIQWCPGMKFKMAFETDDSSRISWFMGNIS 336
Query: 534 KVQEADSLRWPNSPWKMLQV 593 V D +RWPNSPW++LQV Sbjct: 337 SVHVNDPIRWPNSPWRLLQV 356
>tr|B8B1S2|B8B1S2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_24228 PE=4 SV=1 Length = 627
Score = 151 bits (381), Expect = 3e-35 Identities = 86/200 (43%), Positives = 110/200 (55%), Gaps = 2/200 (1%) Frame = +3
Query: 3 SFVNQKKLVAGDAIVFLRSASGELCVGVRRSAKXXXXXXXXXXXMAIDSSPRHISHMSSQ 182 +FVNQKKLVAGD+IVF+R+ +G+LCVG+RR+ K P Sbjct: 143 TFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGVGGPEFLPPPPPPPPPT-------- 194
Query: 183 QASRWEPKSLESPYDFFGICRDGSMRASRTSSDNMTNFARN--RARXXXXXXXXXXXXXX 356 + Y F + G + M AR RAR Sbjct: 195 -------PAAGGNYGGFSMFLRGD-----DDGNKMAAAARGKVRARVRPEEVVEAANLAV 242
Query: 357 XNEPFEVVYYPRATISEFCVKASVVKASLQQNWAPGMRFKMAVETEDASRISWFMGTIAK 536 +PFEVVYYPRA+ EFCVKA V+A+++ W GMRFKMA ETED+SRISWFMGT++ Sbjct: 243 SGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTVSA 302
Query: 537 VQEADSLRWPNSPWKMLQVT 596 VQ AD +RWPNSPW++LQV+ Sbjct: 303 VQVADPIRWPNSPWRLLQVS 322
>tr|B7EQA3|B7EQA3_ORYSJ cDNA clone:J023079H12, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 700
Score = 151 bits (381), Expect = 3e-35 Identities = 89/202 (44%), Positives = 111/202 (54%), Gaps = 4/202 (1%) Frame = +3
Query: 3 SFVNQKKLVAGDAIVFLRSASGELCVGVRRSAKXXXXXXXXXXXMAIDSSPRHISHMSSQ 182 +FVNQKKLVAGD+IVF+R+ +G+LCVG+RR+ K P + Sbjct: 199 TFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGV------------GGPEFLP----- 241
Query: 183 QASRWEPKSLESPYDFFGICRDGSMRASRTSSDN--MTNFARN--RARXXXXXXXXXXXX 350 P P G G R D M AR RAR Sbjct: 242 ------PPPPPPPTPAAGGNYGGFSMFLRGDDDGNKMAAAARGKVRARVRPEEVVEAANL 295
Query: 351 XXXNEPFEVVYYPRATISEFCVKASVVKASLQQNWAPGMRFKMAVETEDASRISWFMGTI 530 +PFEVVYYPRA+ EFCVKA V+A+++ W GMRFKMA ETED+SRISWFMGT+ Sbjct: 296 AVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTV 355
Query: 531 AKVQEADSLRWPNSPWKMLQVT 596 + VQ AD +RWPNSPW++LQV+ Sbjct: 356 SAVQVADPIRWPNSPWRLLQVS 377
>tr|A3BES8|A3BES8_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_021550 PE=4 SV=1 Length = 651
Score = 151 bits (381), Expect = 3e-35 Identities = 89/202 (44%), Positives = 111/202 (54%), Gaps = 4/202 (1%) Frame = +3
Query: 3 SFVNQKKLVAGDAIVFLRSASGELCVGVRRSAKXXXXXXXXXXXMAIDSSPRHISHMSSQ 182 +FVNQKKLVAGD+IVF+R+ +G+LCVG+RR+ K P + Sbjct: 120 TFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGV------------GGPEFLP----- 162
Query: 183 QASRWEPKSLESPYDFFGICRDGSMRASRTSSDN--MTNFARN--RARXXXXXXXXXXXX 350 P P G G R D M AR RAR Sbjct: 163 ------PPPPPPPTPAAGGNYGGFSMFLRGDDDGNKMAAAARGKVRARVRPEEVVEAANL 216
Query: 351 XXXNEPFEVVYYPRATISEFCVKASVVKASLQQNWAPGMRFKMAVETEDASRISWFMGTI 530 +PFEVVYYPRA+ EFCVKA V+A+++ W GMRFKMA ETED+SRISWFMGT+ Sbjct: 217 AVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTV 276
Query: 531 AKVQEADSLRWPNSPWKMLQVT 596 + VQ AD +RWPNSPW++LQV+ Sbjct: 277 SAVQVADPIRWPNSPWRLLQVS 298
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