DK960741 |
Clone id |
TST39A01NGRL0008_D18 |
Library |
TST39 |
Length |
692 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_D18. 5' end sequence. |
Accession |
DK960741 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL30Contig1 |
Sequence |
GTCGTCTCCCTCGAGATCATCATCTTTTCGCAGGGGAAAGAGAAAGCTTGGTTGCAGAGA CCGTCGGGACGCCATGGCTGCAGCTACCGCATCCTCCCTCACGGCCGCCTGTGTCTCCTC CCTCTCTGCCCACTCCTCCACCTCCCCTGCCCCAGATCACATCAATTGCTCCTCTCCTTT CGCCAAATTCTCGGGTCTCAAGCTAGCCTCCTCCCCGCTTCCTTCCCACCACACCCAAGA GAAGAAGAAGAGAAGCAGTGGCAGCAGGAAGGCGCATCATGTCACTGCAACGGCAGCCGT GGAGGCTCCCCCCAAGACCGATGTCTCGTTGGTGGAGAAGAGCATCAATACTATCCGATT CTTGGCCGTTGATGCAGTTGAGAAGGCTAACTCTGGACACCCAGGTCTTCCCATGGGGTG TGCTCCGATGGGCCACATTCTGTATGACGAGATCATGAGATACAACCCAAAAAATCCCTA TTGGTTCAATCGCGACAGGTTCGTCCTTTCTGCGGGCCATGGTTGCATGTTGCAGTATGC ACTTCTTCATCTTGCCGGCTACGACAGCGTCCAGGAGGAAGATCTGAAGCAATTCAGGCA ATGGGAGAGCCGAACTCCTGGGCATCCTGAAAACTTTGAGACGCCTGGTGTGGAGGTTAC TACAGGGCCCCTTGGCCAAGGTATTTGCAATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q43848 |
Definition |
sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tuberosum |
Align length |
174 |
Score (bit) |
254.0 |
E-value |
3.0e-67 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960741|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_D18, 5' (692 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tub... 254 3e-67 sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE... 250 4e-66 sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia ol... 247 4e-65 sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagine... 234 3e-61 sp|Q42675|TKTA_CRAPL Transketolase 10 OS=Craterostigma plantagin... 215 2e-55 sp|Q8YRU9|TKT_ANASP Transketolase OS=Anabaena sp. (strain PCC 71... 208 2e-53 sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans GN=tkt ... 167 4e-41 sp|P51010|TKT_XANFL Transketolase OS=Xanthobacter flavus GN=cbbT... 164 5e-40 sp|P45694|TKT_BACSU Transketolase OS=Bacillus subtilis GN=tkt PE... 164 5e-40 sp|P22976|TKT_STRPN Probable transketolase OS=Streptococcus pneu... 160 8e-39 sp|P34736|TKT_PICST Transketolase OS=Pichia stipitis GN=TKT PE=3... 160 8e-39 sp|Q8NZX4|TKT_STRP8 Transketolase OS=Streptococcus pyogenes sero... 159 1e-38 sp|Q5XAK5|TKT_STRP6 Transketolase OS=Streptococcus pyogenes sero... 159 1e-38 sp|O67642|TKT_AQUAE Transketolase OS=Aquifex aeolicus GN=tkt PE=... 159 1e-38 sp|P23254|TKT1_YEAST Transketolase 1 OS=Saccharomyces cerevisiae... 159 1e-38 sp|O83571|TKT_TREPA Transketolase OS=Treponema pallidum GN=tkt P... 157 5e-38 sp|P57958|TKT2_PASMU Transketolase 2 OS=Pasteurella multocida GN... 157 5e-38 sp|P57927|TKT1_PASMU Transketolase 1 OS=Pasteurella multocida GN... 157 5e-38 sp|Q12630|TKT1_KLULA Transketolase OS=Kluyveromyces lactis GN=TK... 157 5e-38 sp|Q8CPC7|TKT_STAES Transketolase OS=Staphylococcus epidermidis ... 155 2e-37 sp|Q5HPJ9|TKT_STAEQ Transketolase OS=Staphylococcus epidermidis ... 155 2e-37 sp|P66963|TKT_STAAW Transketolase OS=Staphylococcus aureus (stra... 153 7e-37 sp|Q6G9L6|TKT_STAAS Transketolase OS=Staphylococcus aureus (stra... 153 7e-37 sp|Q6GH64|TKT_STAAR Transketolase OS=Staphylococcus aureus (stra... 153 7e-37 sp|P99161|TKT_STAAN Transketolase OS=Staphylococcus aureus (stra... 153 7e-37 sp|P66962|TKT_STAAM Transketolase OS=Staphylococcus aureus (stra... 153 7e-37 sp|Q5HG77|TKT_STAAC Transketolase OS=Staphylococcus aureus (stra... 153 7e-37 sp|P43757|TKT_HAEIN Transketolase OS=Haemophilus influenzae GN=t... 152 1e-36 sp|Q8KA26|TKT_BUCAP Transketolase OS=Buchnera aphidicola subsp. ... 152 2e-36 sp|P57195|TKT_BUCAI Transketolase OS=Buchnera aphidicola subsp. ... 151 3e-36
>sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1 Length = 741
Score = 254 bits (649), Expect = 3e-67 Identities = 124/174 (71%), Positives = 138/174 (79%) Frame = +2
Query: 170 SSPFAKFSGLKLASSPLPSHHTQEKKKRSSGSRXXXXXXXXXXXXXXXXTDVSLVEKSIN 349 S F+ FSGLK S+P S H + ++ ++ TD ++VEKS+N Sbjct: 30 SLSFSTFSGLK--STPFTSSHRRILPS-TTVTKQQFSVRASAAVETLEKTDAAIVEKSVN 86
Query: 350 TIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSAGHGCM 529 TIRFLA+DAVEKANSGHPGLPMGCAPMGHILYDE+M+YNPKNPYWFNRDRFVLSAGHGCM Sbjct: 87 TIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPKNPYWFNRDRFVLSAGHGCM 146
Query: 530 LQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFETPGVEVTTGPLGQGICN 691 LQYALLHLAGYDSVQE+DLK FRQW SR PGHPENFETPGVEVTTGPLGQGI N Sbjct: 147 LQYALLHLAGYDSVQEDDLKSFRQWGSRIPGHPENFETPGVEVTTGPLGQGIAN 200
>sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE=1 SV=1 Length = 675
Score = 250 bits (639), Expect = 4e-66 Identities = 113/121 (93%), Positives = 119/121 (98%) Frame = +2
Query: 329 LVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVL 508 L+EKS+NTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDE+MRYNPKNPYWFNRDRFVL Sbjct: 15 LLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVL 74
Query: 509 SAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFETPGVEVTTGPLGQGIC 688 SAGHGCMLQYALLHLAGYDSV+EEDLKQFRQW SRTPGHPENFETPGVEVTTGPLGQGI Sbjct: 75 SAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIA 134
Query: 689 N 691 N Sbjct: 135 N 135
>sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 741
Score = 247 bits (631), Expect = 4e-65 Identities = 116/126 (92%), Positives = 119/126 (94%), Gaps = 1/126 (0%) Frame = +2
Query: 317 TDVS-LVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNR 493 TD+ LVEKS+NTIRFLA+DAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNR Sbjct: 75 TDIDQLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNR 134
Query: 494 DRFVLSAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFETPGVEVTTGPL 673 DRFVLSAGHGCMLQYALLHLAGYDSV EEDLK FRQW SR PGHPENFETPGVEVTTGPL Sbjct: 135 DRFVLSAGHGCMLQYALLHLAGYDSVLEEDLKTFRQWGSRIPGHPENFETPGVEVTTGPL 194
Query: 674 GQGICN 691 GQGI N Sbjct: 195 GQGIAN 200
>sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1 Length = 676
Score = 234 bits (597), Expect = 3e-61 Identities = 105/121 (86%), Positives = 113/121 (93%) Frame = +2
Query: 329 LVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVL 508 LV KS+NTIRFLA+DAVEKA SGHPG+PMGCAPMGH+LYDE MR+NPKNPYWFNRDRFVL Sbjct: 13 LVSKSVNTIRFLAIDAVEKAKSGHPGMPMGCAPMGHVLYDEFMRFNPKNPYWFNRDRFVL 72
Query: 509 SAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFETPGVEVTTGPLGQGIC 688 SAGHGCMLQYALLHL+GYDSV+EEDLK RQW SRTP HPENFETPGVEVTTGPLGQGI Sbjct: 73 SAGHGCMLQYALLHLSGYDSVKEEDLKSLRQWGSRTPAHPENFETPGVEVTTGPLGQGIA 132
Query: 689 N 691 + Sbjct: 133 S 133
>sp|Q42675|TKTA_CRAPL Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1 Length = 679
Score = 215 bits (548), Expect = 2e-55 Identities = 96/119 (80%), Positives = 106/119 (89%) Frame = +2
Query: 329 LVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVL 508 LV KS+NTIRFLA+DAVE SGHPG+PMGCAPMGH+L+DE M++NPKNPYWFNRDRFVL Sbjct: 17 LVVKSVNTIRFLAIDAVENVKSGHPGMPMGCAPMGHVLFDEFMKFNPKNPYWFNRDRFVL 76
Query: 509 SAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFETPGVEVTTGPLGQGI 685 SAGHG ML Y LLHLAGYDSV+ EDLK RQW S+TP HPENFETPGVEVTTGPLGQG+ Sbjct: 77 SAGHGAMLLYGLLHLAGYDSVKVEDLKGLRQWGSKTPAHPENFETPGVEVTTGPLGQGV 135
>sp|Q8YRU9|TKT_ANASP Transketolase OS=Anabaena sp. (strain PCC 7120) GN=tkt PE=1 SV=1 Length = 670
Score = 208 bits (530), Expect = 2e-53 Identities = 98/122 (80%), Positives = 105/122 (86%) Frame = +2
Query: 326 SLVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFV 505 SL E SIN IRFLAVDA+EKA SGHPGLPMG APM +L++ MRYNPKNP WFNRDRFV Sbjct: 7 SLEELSINAIRFLAVDAIEKAKSGHPGLPMGAAPMAFVLWNRFMRYNPKNPKWFNRDRFV 66
Query: 506 LSAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFETPGVEVTTGPLGQGI 685 LSAGHG MLQYALL+L GYDSV ED+KQFRQWES+TPGHPENF T GVEVTTGPLGQGI Sbjct: 67 LSAGHGSMLQYALLYLTGYDSVSIEDIKQFRQWESKTPGHPENFMTAGVEVTTGPLGQGI 126
Query: 686 CN 691 N Sbjct: 127 AN 128
>sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans GN=tkt PE=3 SV=1 Length = 666
Score = 167 bits (424), Expect = 4e-41 Identities = 77/115 (66%), Positives = 92/115 (80%) Frame = +2
Query: 341 SINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSAGH 520 ++NTIR L++D+VEKANSGHPG+PMG APM L+ + M +NP NP W NRDRFVLSAGH Sbjct: 9 AVNTIRTLSIDSVEKANSGHPGMPMGAAPMAFCLWTKFMNHNPANPDWVNRDRFVLSAGH 68
Query: 521 GCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFETPGVEVTTGPLGQGI 685 G ML Y+LLHL GYD + E+L+ FRQW S+TPGHPE TPGVE TTGPLGQG+ Sbjct: 69 GSMLLYSLLHLTGYD-LSLEELQNFRQWGSKTPGHPEYGHTPGVEATTGPLGQGV 122
>sp|P51010|TKT_XANFL Transketolase OS=Xanthobacter flavus GN=cbbT PE=3 SV=2 Length = 668
Score = 164 bits (414), Expect = 5e-40 Identities = 73/117 (62%), Positives = 94/117 (80%) Frame = +2
Query: 335 EKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSA 514 ++ N IRFLA+DAVE ANSGHPGLPMG A + +L+ ++++Y+P P+W +RDRFVLSA Sbjct: 13 DRLANAIRFLAIDAVEAANSGHPGLPMGAADIATVLFTKVLKYDPSRPFWPDRDRFVLSA 72
Query: 515 GHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFETPGVEVTTGPLGQGI 685 GHG ML Y++LHLAGY+ V +++K+FRQ S TPGHPENF T G+E TTGPLGQGI Sbjct: 73 GHGSMLLYSVLHLAGYEKVTIDEIKRFRQLGSLTPGHPENFVTEGIETTTGPLGQGI 129
>sp|P45694|TKT_BACSU Transketolase OS=Bacillus subtilis GN=tkt PE=3 SV=2 Length = 667
Score = 164 bits (414), Expect = 5e-40 Identities = 76/120 (63%), Positives = 95/120 (79%) Frame = +2
Query: 326 SLVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFV 505 ++ +KS+ TIR L++DA+EKANSGHPG+PMG APM + L+ + M +P NP WFNRDRFV Sbjct: 3 TIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFV 62
Query: 506 LSAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFETPGVEVTTGPLGQGI 685 LSAGHG L Y++LHL+G+D + EDLK FRQW S+TPGHPE T GV+ TTGPLGQGI Sbjct: 63 LSAGHGSALLYSMLHLSGFD-LSIEDLKGFRQWGSKTPGHPEFGHTAGVDATTGPLGQGI 121
>sp|P22976|TKT_STRPN Probable transketolase OS=Streptococcus pneumoniae GN=tkt PE=3 SV=2 Length = 658
Score = 160 bits (404), Expect = 8e-39 Identities = 70/115 (60%), Positives = 88/115 (76%) Frame = +2
Query: 341 SINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSAGH 520 S+N IRFL +DA+ KANSGHPG+ MG APM + L+ + + NP P W NRDRF+LSAGH Sbjct: 5 SVNAIRFLGIDAINKANSGHPGVVMGAAPMAYSLFTKQLHINPAQPNWINRDRFILSAGH 64
Query: 521 GCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFETPGVEVTTGPLGQGI 685 G ML YALLHL+G++ V +++K FRQW S+TPGHPE T G++ TTGPLGQGI Sbjct: 65 GSMLLYALLHLSGFEDVSMDEIKSFRQWGSKTPGHPEFGHTAGIDATTGPLGQGI 119
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P7Z7 |
Definition |
tr|A9P7Z7|A9P7Z7_POPTR Putative uncharacterized protein OS=Populus trichocarpa |
Align length |
168 |
Score (bit) |
258.0 |
E-value |
3.0e-67 |
Report |
|