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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960753
Clone id TST39A01NGRL0008_E06
Library
Length 693
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_E06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGAACGAGGAGAGAACTTTTGCGTTCTCGTTTGATCAGATCATCTTTCACATCAATCAAC
TTTCCAAACTGCGAGATTGCGTCTTCTCCTCAAACAAAATAGCGGTAAGCAGAGATGGGC
TAGAGCTTTCTGGGCCGCACTTGGCTGTGGCCAAGTCTGGAGCTTCAGCAAGCACTCAGC
ATTGCTTACTTCAAATTTTGAGCCTATTTTCGGCCAATCCAGCAGAATAAGTCACTCTGC
GGGGTAAATCTTGCTCGCTCAATTCCTCTGTCTCATTCACATCTCTGCTAAATTAAGCAG
AGGGAGCCCCTTAAGATGAATCCTCTCTGGTTAGGCTCCTAAGTTTGCGCAGGGCACGCG
TATCAGGCTTGCAACTCACCATTTTTACTCTTTGGGGTCCTCTTGGAAGACAACCTATAA
GCATGCATGTAAGGATTCGAAAGCCATGGATATCACTAGTAACGCTGGAGCAGAGAAGGA
AGAATGTGTCAGCACCAAGACTTGGTCAGACCAAGAGAAGGGTTTTCGAGCCTATGCTCA
ACAACAGCTACATCAAAGAGCCTCCGGCAAAGCAAGACATCCTCCCCGGTTGATTGTCAA
CCGTCCAATTTTGGTCAAACTGACAAAGGAGATTGTGGAAACTTTCCAAATGTGCAATCC
TTCCTATACATTTCCAGAACCATTAAATTCAAA
■■Homology search results ■■ -
sp_hit_id Q9U572
Definition sp|Q9U572|CLOT_PENMO Hemolymph clottable protein OS=Penaeus monodon
Align length 62
Score (bit) 35.0
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960753|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_E06, 5'
         (693 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9U572|CLOT_PENMO Hemolymph clottable protein OS=Penaeus mono...    35   0.38 
sp|P04774|SCN1A_RAT Sodium channel protein type 1 subunit alpha ...    34   0.86 
sp|P35498|SCN1A_HUMAN Sodium channel protein type 1 subunit alph...    34   0.86 
sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alph...    33   1.5  
sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha ...    32   2.5  
sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha ...    32   4.2  
sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alph...    32   4.2  
sp|Q99P77|NOG1_RAT Nucleolar GTP-binding protein 1 OS=Rattus nor...    31   5.5  
sp|Q479U3|OSTA_DECAR LPS-assembly protein OS=Dechloromonas aroma...    31   7.2  
sp|Q7VN28|SURE_HAEDU 5'-nucleotidase surE OS=Haemophilus ducreyi...    30   9.4  
sp|A5V9W3|G6PI_SPHWW Glucose-6-phosphate isomerase OS=Sphingomon...    30   9.4  

>sp|Q9U572|CLOT_PENMO Hemolymph clottable protein OS=Penaeus monodon
           PE=1 SV=1
          Length = 1670

 Score = 35.0 bits (79), Expect = 0.38
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +1

Query: 514 REGFSSLCSTTATSK--SLRQSKTSSPVDCQPSNFGQTDKGDCGNFPNVQSFLY-ISRTI 684
           R+ +SS  +T   SK  S   SKTSS    + S  G+T  G   N P+++  L+ + RT 
Sbjct: 193 RDAYSSSYTTKTKSKTSSKTSSKTSSKTSSKTSKTGKTSPGQLANVPHIEDTLWSVRRTT 252

Query: 685 KF 690
            F
Sbjct: 253 DF 254


>sp|P04774|SCN1A_RAT Sodium channel protein type 1 subunit alpha
            OS=Rattus norvegicus GN=Scn1a PE=2 SV=1
          Length = 2009

 Score = 33.9 bits (76), Expect = 0.86
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 580  SSPVDCQPS--NFGQTDKGDCGNFPNVQSFLYISRTI 684
            S P DC P+  N G + KGDCGN P+V  F ++S  I
Sbjct: 1736 SKPPDCDPNKVNPGSSVKGDCGN-PSVGIFFFVSYII 1771


>sp|P35498|SCN1A_HUMAN Sodium channel protein type 1 subunit alpha
            OS=Homo sapiens GN=SCN1A PE=1 SV=2
          Length = 2009

 Score = 33.9 bits (76), Expect = 0.86
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 580  SSPVDCQPS--NFGQTDKGDCGNFPNVQSFLYISRTI 684
            S P DC P+  N G + KGDCGN P+V  F ++S  I
Sbjct: 1736 SKPPDCDPNKVNPGSSVKGDCGN-PSVGIFFFVSYII 1771


>sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alpha
            OS=Homo sapiens GN=SCN3A PE=1 SV=2
          Length = 2000

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 580  SSPVDCQPSNF--GQTDKGDCGNFPNVQSFLYISRTI 684
            S+P DC P     G + KGDCGN P+V  F ++S  I
Sbjct: 1721 SAPPDCDPDTIHPGSSVKGDCGN-PSVGIFFFVSYII 1756


>sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha
            OS=Rattus norvegicus GN=Scn3a PE=1 SV=1
          Length = 1951

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 580  SSPVDCQPSNF--GQTDKGDCGNFPNVQSFLYISRTI 684
            S+P DC P     G + KGDCGN P+V  F ++S  I
Sbjct: 1672 SAPPDCDPDAIHPGSSVKGDCGN-PSVGIFFFVSYII 1707


>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha
            OS=Rattus norvegicus GN=Scn2a PE=1 SV=1
          Length = 2005

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 580  SSPVDCQPSNF--GQTDKGDCGNFPNVQSFLYISRTI 684
            S P DC P     G + KGDCGN P+V  F ++S  I
Sbjct: 1726 SGPPDCDPEKDHPGSSVKGDCGN-PSVGIFFFVSYII 1761


>sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha
            OS=Homo sapiens GN=SCN2A PE=1 SV=3
          Length = 2005

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 580  SSPVDCQPSNF--GQTDKGDCGNFPNVQSFLYISRTI 684
            S P DC P     G + KGDCGN P+V  F ++S  I
Sbjct: 1726 SGPPDCDPDKDHPGSSVKGDCGN-PSVGIFFFVSYII 1761


>sp|Q99P77|NOG1_RAT Nucleolar GTP-binding protein 1 OS=Rattus
           norvegicus GN=Gtpbp4 PE=2 SV=3
          Length = 637

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
 Frame = +3

Query: 402 LGRQPISMHVRIRKPW------------ISLVTLEQRRKNVSAPRLGQTKRRVFEPMLNN 545
           LG  P+S+ V+ RK W              L  L+ + KN   PR+ +T ++V    L N
Sbjct: 464 LGSMPVSLRVKTRKWWKIRQLAKQIREKKKLKILQSKEKNTQGPRMPRTAKKVQRADLEN 523


>sp|Q479U3|OSTA_DECAR LPS-assembly protein OS=Dechloromonas
           aromatica (strain RCB) GN=imp PE=3 SV=1
          Length = 849

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +3

Query: 69  LRDCVFSSNKIAVSRDGLELSGPH----LAVAKSGASASTQHCLLQILSLFSANPAE*VT 236
           L D V ++  + + +DG E+SGPH    LA     A   T H + ++ S F A P + V 
Sbjct: 140 LEDEVEATGSVRMLQDGAEISGPHMRMKLADQIGSAEQVTYHIVKEVPSRFYA-PQQTVV 198

Query: 237 LRGKSCSLNSSVSFTSLLN*AEGAP 311
               S + NS       ++ + G P
Sbjct: 199 TVASSNATNSGAPMMLNVSNSYGLP 223


>sp|Q7VN28|SURE_HAEDU 5'-nucleotidase surE OS=Haemophilus ducreyi
           GN=surE PE=3 SV=1
          Length = 253

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 18  FAFSFDQIIFHINQLSKLRDCVFSSNKIAVSRDGLELSGPHLAVAKSG 161
           F  SFD ++  IN  + L D V  S  +A + +G  L  P LAV+  G
Sbjct: 81  FETSFDLVVSGINHGANLGDDVVYSGTVAAALEGRHLRLPSLAVSLVG 128
tr_hit_id A8DR94
Definition tr|A8DR94|A8DR94_PENVA Hemolymph clottable protein OS=Penaeus vannamei
Align length 60
Score (bit) 42.4
E-value 0.029
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960753|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_E06, 5'
         (693 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8DR94|A8DR94_PENVA Hemolymph clottable protein OS=Penaeus va...    42   0.029
tr|Q9FGC1|Q9FGC1_ARATH Protein kinase-like OS=Arabidopsis thalia...    39   0.31 
tr|Q8RWH3|Q8RWH3_ARATH Putative uncharacterized protein At5g3598...    39   0.31 
tr|Q56YT6|Q56YT6_ARATH Protein kinase-like OS=Arabidopsis thalia...    39   0.31 
tr|A7PAY9|A7PAY9_VITVI Chromosome chr16 scaffold_10, whole genom...    39   0.41 
tr|B8AH87|B8AH87_ORYSI Putative uncharacterized protein OS=Oryza...    37   1.6  
tr|B5KMA2|B5KMA2_PENMO Clottable protein 2 OS=Penaeus monodon PE...    37   1.6  
tr|Q7XTQ2|Q7XTQ2_ORYSJ Os04g0602800 protein OS=Oryza sativa subs...    36   2.7  
tr|Q01HS6|Q01HS6_ORYSA B0403H10-OSIGBa0105A11.22 protein OS=Oryz...    36   2.7  
tr|B8ATX0|B8ATX0_ORYSI Putative uncharacterized protein OS=Oryza...    36   2.7  
tr|A9TA59|A9TA59_PHYPA Predicted protein OS=Physcomitrella paten...    36   2.7  
tr|A3AX46|A3AX46_ORYSJ Putative uncharacterized protein OS=Oryza...    36   2.7  
tr|A9SXG3|A9SXG3_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   4.5  
tr|B1VTF8|B1VTF8_STRGG Putative M23-family peptidase OS=Streptom...    35   5.9  
tr|A9U0E5|A9U0E5_PHYPA Predicted protein OS=Physcomitrella paten...    34   7.7  

>tr|A8DR94|A8DR94_PENVA Hemolymph clottable protein OS=Penaeus
           vannamei PE=2 SV=1
          Length = 1666

 Score = 42.4 bits (98), Expect = 0.029
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 514 REGFSSLCSTTATSKSLRQSKTSSPVDCQPSNFGQTDKGDCGNFPNVQSFLY-ISRTIKF 690
           R+ +SS  +T  TSK+ + SKTSS    + S  G+T  G   N P+++  L+ I RT  F
Sbjct: 193 RDAYSSSYTTKTTSKTSKSSKTSSKTPSKTSKTGKTSPGQLANVPHIEDTLWSIRRTTDF 252


>tr|Q9FGC1|Q9FGC1_ARATH Protein kinase-like OS=Arabidopsis thaliana
           PE=4 SV=1
          Length = 787

 Score = 38.9 bits (89), Expect = 0.31
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
 Frame = +2

Query: 449 DITSNAGAEKEEC-------VSTKTWSDQEKGFRAYAQQQLHQRASGKARHPPRLIVNRP 607
           DI S+ GA            VST  W   +  F+ Y    L Q  S    H   + V +P
Sbjct: 3   DIDSSDGAAAARAGEIGSIGVSTP-WKPIQLVFKRY----LPQNGSASKVH---VAVKKP 54

Query: 608 ILVKLTKEIVETFQMCNPSYTFPEPLN 688
           ++V+LT+++VET+++C+P + +   LN
Sbjct: 55  VVVRLTRDLVETYKICDPQFKYRGELN 81


>tr|Q8RWH3|Q8RWH3_ARATH Putative uncharacterized protein
           At5g35980At5g35990 (Protein kinase like protein)
           (At5g35980) OS=Arabidopsis thaliana
           GN=At5g35980At5g35990 PE=2 SV=1
          Length = 956

 Score = 38.9 bits (89), Expect = 0.31
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
 Frame = +2

Query: 449 DITSNAGAEKEEC-------VSTKTWSDQEKGFRAYAQQQLHQRASGKARHPPRLIVNRP 607
           DI S+ GA            VST  W   +  F+ Y    L Q  S    H   + V +P
Sbjct: 3   DIDSSDGAAAARAGEIGSIGVSTP-WKPIQLVFKRY----LPQNGSASKVH---VAVKKP 54

Query: 608 ILVKLTKEIVETFQMCNPSYTFPEPLN 688
           ++V+LT+++VET+++C+P + +   LN
Sbjct: 55  VVVRLTRDLVETYKICDPQFKYRGELN 81


>tr|Q56YT6|Q56YT6_ARATH Protein kinase-like OS=Arabidopsis thaliana
           GN=At5g35980 PE=2 SV=1
          Length = 518

 Score = 38.9 bits (89), Expect = 0.31
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
 Frame = +2

Query: 449 DITSNAGAEKEEC-------VSTKTWSDQEKGFRAYAQQQLHQRASGKARHPPRLIVNRP 607
           DI S+ GA            VST  W   +  F+ Y    L Q  S    H   + V +P
Sbjct: 3   DIDSSDGAAAARAGEIGSIGVSTP-WKPIQLVFKRY----LPQNGSASKVH---VAVKKP 54

Query: 608 ILVKLTKEIVETFQMCNPSYTFPEPLN 688
           ++V+LT+++VET+++C+P + +   LN
Sbjct: 55  VVVRLTRDLVETYKICDPQFKYRGELN 81


>tr|A7PAY9|A7PAY9_VITVI Chromosome chr16 scaffold_10, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00013878001
           PE=4 SV=1
          Length = 310

 Score = 38.5 bits (88), Expect = 0.41
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +2

Query: 608 ILVKLTKEIVETFQMCNPSYTFPEPLN 688
           ++ +LTK+IVET+Q+CNP + + E LN
Sbjct: 17  LVARLTKDIVETYQICNPQFKYSEELN 43


>tr|B8AH87|B8AH87_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08603 PE=4 SV=1
          Length = 855

 Score = 36.6 bits (83), Expect = 1.6
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 536 AQQQLHQRASGKARHPPRL--IVNRPILVKLTKEIVETFQMCNPSYTFPEPLN 688
           A   L  R +G A     L  +  RP + +LT +IV+TF  CNP + + + LN
Sbjct: 35  AGASLSGRRNGLAARSSNLSSVRKRPFVARLTTDIVQTFGKCNPEFKYSDSLN 87


>tr|B5KMA2|B5KMA2_PENMO Clottable protein 2 OS=Penaeus monodon PE=2
           SV=1
          Length = 1667

 Score = 36.6 bits (83), Expect = 1.6
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 514 REGFSSLCSTTATSKSLRQSKTSSPVDCQPSNFGQTDKGDCGNFPNVQSFLY-ISRTIKF 690
           R+ +SS  +T A SK+   SKTSS    + S  G+T  G   N P+++  L+ + RT  F
Sbjct: 193 RDAYSSSYTTKAKSKT--SSKTSSKTSSKTSKTGKTSPGQLANVPHIEDTLWSVRRTTDF 250


>tr|Q7XTQ2|Q7XTQ2_ORYSJ Os04g0602800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0041A02.17 PE=2 SV=2
          Length = 924

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 593 IVNRPILVKLTKEIVETFQMCNPSYTFPEPLN 688
           +  +P + +LT +I++TF  CNP++ + E LN
Sbjct: 56  VKRKPFVARLTADIIQTFVRCNPAFKYSESLN 87


>tr|Q01HS6|Q01HS6_ORYSA B0403H10-OSIGBa0105A11.22 protein OS=Oryza
           sativa GN=B0403H10-OSIGBa0105A11.22 PE=4 SV=1
          Length = 924

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 593 IVNRPILVKLTKEIVETFQMCNPSYTFPEPLN 688
           +  +P + +LT +I++TF  CNP++ + E LN
Sbjct: 56  VKRKPFVARLTADIIQTFVRCNPAFKYSESLN 87


>tr|B8ATX0|B8ATX0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_17274 PE=4 SV=1
          Length = 924

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 593 IVNRPILVKLTKEIVETFQMCNPSYTFPEPLN 688
           +  +P + +LT +I++TF  CNP++ + E LN
Sbjct: 56  VKRKPFVARLTADIIQTFVRCNPAFKYSESLN 87