DK960755 |
Clone id |
TST39A01NGRL0008_E08 |
Library |
TST39 |
Length |
632 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_E08. 5' end sequence. |
Accession |
DK960755 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL110Contig2 |
Sequence |
CGGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTTTTAGACTGCAA GGCCATTTTTTTTATTCATAATACCATATATAGTGAAATGAAAATGACGTAGGTCGATAT GCAGCCACATTTTGAACCCATCTCATATAGCCGAGATGAAAAGCGACATTACATACAAAC ACAAGATCATGTCAAAAACAAGCAAGGAGCAAGTTGCTTAGAAGAGGCCATGTTTCTTCT TCCTGCGCCCTCCTTCCCCATCACTTTCGCTGCTGCTGGAGCTGCTGTCATCGTCGCCAC CCTTCATCTTGTGTTTCATCTTCTCAATGGGGCCTTCATGGTGGGGTGGGGGCGGCTCAT GGGCATGGGCAGGTGGAGCCCCACCATGGTGGTGCTGCTGCTGCTCCAGCCCACCGTAAC CTGCATGAACAGGGGGTGGTCCTGCATGCATCTGTCCCGGGTGCTCATGCTGATCATAGG AGGCCGCGGCCACATGGGGGGGCACCCCACCATGATGCTCGCCACCACCACCGTGATGGC CAGGATCATAGTCTCCTGCATATTGCGGTGGTGGGTGAGCTGGGTGCTCTTCTTCTTTGC GATGACCCCCCATGTGCAGCATCTCGCCTATC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q69ZH9 |
Definition |
sp|Q69ZH9|RHG23_MOUSE Rho GTPase-activating protein 23 OS=Mus musculus |
Align length |
33 |
Score (bit) |
31.2 |
E-value |
3.9 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q941N0 |
Definition |
tr|Q941N0|Q941N0_9FABA Drought-induced protein OS=Retama raetam |
Align length |
27 |
Score (bit) |
37.7 |
E-value |
0.47 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960755|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_E08, 5' (581 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q941N0|Q941N0_9FABA Drought-induced protein OS=Retama raetam ... 38 0.47 tr|A9XE62|A9XE62_SOYBN KS-type dehydrin SLTI629 OS=Glycine max P... 35 4.0 tr|Q6QDC8|Q6QDC8_MOUSE Putative cyclooxygenase 3 OS=Mus musculus... 34 6.8 tr|Q9VYV7|Q9VYV7_DROME Phosphorylase kinase gamma OS=Drosophila ... 33 8.8 tr|Q9I7D0|Q9I7D0_DROME Phosphorylase kinase gamma, isoform A OS=... 33 8.8 tr|Q961E7|Q961E7_DROME Phosphorylase kinase gamma, isoform B OS=... 33 8.8 tr|Q7K4Y9|Q7K4Y9_DROME GH22314p OS=Drosophila melanogaster GN=Ph... 33 8.8 tr|Q29JA5|Q29JA5_DROPS GA14880 OS=Drosophila pseudoobscura pseud... 33 8.8 tr|B4R361|B4R361_DROSI GD17041 OS=Drosophila simulans GN=GD17041... 33 8.8 tr|B4Q1S3|B4Q1S3_DROYA GE15660 OS=Drosophila yakuba GN=GE15660 P... 33 8.8 tr|B4MT15|B4MT15_DROWI GK20076 OS=Drosophila willistoni GN=GK200... 33 8.8 tr|B4MAI4|B4MAI4_DROVI GJ15921 OS=Drosophila virilis GN=GJ15921 ... 33 8.8 tr|B4L681|B4L681_DROMO GI16230 OS=Drosophila mojavensis GN=GI162... 33 8.8 tr|B4JM18|B4JM18_DROGR GH24413 OS=Drosophila grimshawi GN=GH2441... 33 8.8 tr|B4IK49|B4IK49_DROSE GM13103 OS=Drosophila sechellia GN=GM1310... 33 8.8 tr|B4H3T7|B4H3T7_DROPE GL15144 OS=Drosophila persimilis GN=GL151... 33 8.8 tr|B3NUA3|B3NUA3_DROER GG18438 OS=Drosophila erecta GN=GG18438 P... 33 8.8 tr|B3MSC4|B3MSC4_DROAN GF20823 OS=Drosophila ananassae GN=GF2082... 33 8.8
>tr|Q941N0|Q941N0_9FABA Drought-induced protein OS=Retama raetam GN=DIP PE=4 SV=1 Length = 113
Score = 37.7 bits (86), Expect = 0.47 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -2
Query: 580 IGEMLHMGGHRKEEEHPAHPPPQYAGD 500 IGE LH+GGH+KEEEH +Y G+ Sbjct: 8 IGETLHVGGHKKEEEHKGEVHGEYKGE 34
>tr|A9XE62|A9XE62_SOYBN KS-type dehydrin SLTI629 OS=Glycine max PE=4 SV=1 Length = 113
Score = 34.7 bits (78), Expect = 4.0 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = -2
Query: 580 IGEMLHMGGHRKEEEHPA-HPPPQYAGDY 497 IG LH+GGH+KEEEH H +Y G++ Sbjct: 8 IGGTLHVGGHKKEEEHKGEHHAGEYKGEH 36
>tr|Q6QDC8|Q6QDC8_MOUSE Putative cyclooxygenase 3 OS=Mus musculus GN=Ptgs1 PE=2 SV=1 Length = 127
Score = 33.9 bits (76), Expect = 6.8 Identities = 12/16 (75%), Positives = 12/16 (75%) Frame = +1
Query: 214 FRCCWSCCHRRHPSSC 261 F CC SCC RRHP SC Sbjct: 43 FPCCCSCCCRRHPRSC 58
>tr|Q9VYV7|Q9VYV7_DROME Phosphorylase kinase gamma OS=Drosophila melanogaster GN=PhKgamma PE=2 SV=2 Length = 560
Score = 33.5 bits (75), Expect = 8.8 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3
Query: 507 QETMILAITVVVASIMVGCPPMWPRPPMISM 415 QE I A V++ +++VGCPP W R M+ + Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242
>tr|Q9I7D0|Q9I7D0_DROME Phosphorylase kinase gamma, isoform A OS=Drosophila melanogaster GN=PhKgamma PE=2 SV=2 Length = 502
Score = 33.5 bits (75), Expect = 8.8 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3
Query: 507 QETMILAITVVVASIMVGCPPMWPRPPMISM 415 QE I A V++ +++VGCPP W R M+ + Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242
>tr|Q961E7|Q961E7_DROME Phosphorylase kinase gamma, isoform B OS=Drosophila melanogaster GN=PhKgamma PE=2 SV=1 Length = 419
Score = 33.5 bits (75), Expect = 8.8 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3
Query: 507 QETMILAITVVVASIMVGCPPMWPRPPMISM 415 QE I A V++ +++VGCPP W R M+ + Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242
>tr|Q7K4Y9|Q7K4Y9_DROME GH22314p OS=Drosophila melanogaster GN=PhKgamma PE=2 SV=1 Length = 560
Score = 33.5 bits (75), Expect = 8.8 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3
Query: 507 QETMILAITVVVASIMVGCPPMWPRPPMISM 415 QE I A V++ +++VGCPP W R M+ + Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242
>tr|Q29JA5|Q29JA5_DROPS GA14880 OS=Drosophila pseudoobscura pseudoobscura GN=GA14880 PE=4 SV=2 Length = 571
Score = 33.5 bits (75), Expect = 8.8 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3
Query: 507 QETMILAITVVVASIMVGCPPMWPRPPMISM 415 QE I A V++ +++VGCPP W R M+ + Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242
>tr|B4R361|B4R361_DROSI GD17041 OS=Drosophila simulans GN=GD17041 PE=4 SV=1 Length = 593
Score = 33.5 bits (75), Expect = 8.8 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3
Query: 507 QETMILAITVVVASIMVGCPPMWPRPPMISM 415 QE I A V++ +++VGCPP W R M+ + Sbjct: 224 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 254
>tr|B4Q1S3|B4Q1S3_DROYA GE15660 OS=Drosophila yakuba GN=GE15660 PE=4 SV=1 Length = 606
Score = 33.5 bits (75), Expect = 8.8 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3
Query: 507 QETMILAITVVVASIMVGCPPMWPRPPMISM 415 QE I A V++ +++VGCPP W R M+ + Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242
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