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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960760
Clone id TST39A01NGRL0008_E13
Library
Length 626
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_E13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AGTAACGCTTATATTTCCTGTCGAGATCGCTGAGAATTCGGCGTTCACTCTCTCTGCTCT
CAAAGCGCACCAGTAGCTCGCTTATGGACAAGCGGTTTCTTGTACTGCAGTACCTTGCTG
AGAGAAAGCTCCTCGGAGCAGTGTAAGTCGAAAATGAGGGGCTCCGCAACCCAAGCTATG
AAGAGGACCGTCCACAGACTTAAAGGTCTTGTGGAAGAGGCTAAGAGACGCACGATTCTT
TGGGCTATCTTCATTGCTGGGTTCGCCTACCTGCTCTCTTTGACAAGCAGTTCGGTCTGG
CTAAATGTTCCTGTTGCAGCAGCTTTTCTTATCCTGATACGCTATCTCTCTTTTGAGTTG
GAGATACGTAGAAAGGTTCACATATCCAGTATCCCATCACATCTTTCACATTTGCTGAAA
AATCAGCTTTCTTGTGATGATTTGCTGCTCTCATCAACAACATCAATTCATTGGAGAAGG
AAGATTGACTCTCCGATCATAGAGGAAGCTCTTGATGGTTTTACAAGGCGTATTGTGCAA
GAATTTGTCACAAATTCGTGGTACTCTGCCCTTTCGCCTGATCAAGATGTTCCTGAGCAG
ATTCGCCTTCTTGTCATTGACATATT
■■Homology search results ■■ -
sp_hit_id Q5YY71
Definition sp|Q5YY71|THII_NOCFA Probable thiamine biosynthesis protein thiI OS=Nocardia farcinica
Align length 69
Score (bit) 32.7
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960760|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_E13, 5'
         (626 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5YY71|THII_NOCFA Probable thiamine biosynthesis protein thiI...    33   1.6  
sp|Q94KB1|MLO14_ARATH MLO-like protein 14 OS=Arabidopsis thalian...    30   7.7  

>sp|Q5YY71|THII_NOCFA Probable thiamine biosynthesis protein thiI
           OS=Nocardia farcinica GN=thiI PE=3 SV=1
          Length = 410

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -2

Query: 457 LMRAANHHKKADFSANVKDVMGYWICEPFYVSPTQKRDSVSG*EKLLQQEHLARPNC--- 287
           L+ +A+H   A+ +  +++VMG  + +P    P    D+ +    LL++ H  RP     
Sbjct: 48  LVASAHHRDPAELTRRLQEVMGLNVVQPALSVPPTVEDATAAAVDLLRRRHAERPGAPVP 107

Query: 286 -LSKRAGRR 263
             + RA RR
Sbjct: 108 TFAVRARRR 116


>sp|Q94KB1|MLO14_ARATH MLO-like protein 14 OS=Arabidopsis thaliana
           GN=MLO14 PE=2 SV=1
          Length = 554

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
 Frame = +1

Query: 178 MKRTVHRLKGLVEEAKRRTILWA-------IFIAGFAYLLSLTSSSVWLNVPVAAAF 327
           ++R++HRL   +++ KR+ +  A       + + GF  LL   +SS   N+ V+++F
Sbjct: 34  VERSIHRLSNWLQKTKRKPLFAALEKMKEELMLLGFISLLLTATSSTIANICVSSSF 90
tr_hit_id A9RFT2
Definition tr|A9RFT2|A9RFT2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 139
Score (bit) 119.0
E-value 1.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960760|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_E13, 5'
         (626 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RFT2|A9RFT2_PHYPA Predicted protein (Fragment) OS=Physcomit...   119   1e-25
tr|A9SD38|A9SD38_PHYPA Predicted protein OS=Physcomitrella paten...   118   3e-25
tr|A7P7B1|A7P7B1_VITVI Chromosome chr9 scaffold_7, whole genome ...   116   1e-24
tr|A7P9B0|A7P9B0_VITVI Chromosome chr3 scaffold_8, whole genome ...   109   2e-22
tr|A5AN73|A5AN73_VITVI Putative uncharacterized protein OS=Vitis...   108   3e-22
tr|Q75HY6|Q75HY6_ORYSJ Os05g0583500 protein OS=Oryza sativa subs...   106   1e-21
tr|A2Y7Y8|A2Y7Y8_ORYSI Putative uncharacterized protein OS=Oryza...   106   1e-21
tr|Q0IUF9|Q0IUF9_ORYSJ Os11g0159000 protein OS=Oryza sativa subs...   103   1e-20
tr|A3B781|A3B781_ORYSJ Putative uncharacterized protein OS=Oryza...   101   3e-20
tr|A9SDH2|A9SDH2_PHYPA Predicted protein OS=Physcomitrella paten...   101   4e-20
tr|Q9XI44|Q9XI44_ARATH F9L1.19 protein OS=Arabidopsis thaliana G...    94   5e-18
tr|Q8GZ64|Q8GZ64_ARATH Putative uncharacterized protein At1g1524...    94   5e-18
tr|A9S4X5|A9S4X5_PHYPA Predicted protein OS=Physcomitrella paten...    90   1e-16
tr|Q9XIM1|Q9XIM1_ARATH Putative uncharacterized protein At2g1590...    89   2e-16
tr|Q2RAA5|Q2RAA5_ORYSJ Phox domain-containing protein, putative,...    84   5e-15
tr|Q2RAA4|Q2RAA4_ORYSJ Phox domain-containing protein, putative,...    84   5e-15
tr|B8BJ83|B8BJ83_ORYSI Putative uncharacterized protein OS=Oryza...    84   5e-15
tr|A3C8V3|A3C8V3_ORYSJ Putative uncharacterized protein OS=Oryza...    84   5e-15
tr|A5ATX3|A5ATX3_VITVI Putative uncharacterized protein OS=Vitis...    75   3e-12
tr|A8I8X5|A8I8X5_CHLRE Predicted protein OS=Chlamydomonas reinha...    37   0.74 
tr|Q173P1|Q173P1_AEDAE Putative uncharacterized protein OS=Aedes...    37   0.96 
tr|A4J238|A4J238_DESRM Major facilitator superfamily MFS_1 OS=De...    35   3.7  
tr|A4S1I7|A4S1I7_OSTLU Predicted protein OS=Ostreococcus lucimar...    35   4.8  
tr|A7TEI6|A7TEI6_VANPO Putative uncharacterized protein OS=Vande...    34   6.2  

>tr|A9RFT2|A9RFT2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_113447 PE=4 SV=1
          Length = 982

 Score =  119 bits (299), Expect = 1e-25
 Identities = 62/139 (44%), Positives = 85/139 (61%)
 Frame = +1

Query: 199 LKGLVEEAKRRTILWAIFIAGFAYLLSLTSSSVWLNVPVAAAFLILIRYLSFELEIRRKV 378
           LK L+EEAKRRTIL AIF    AY +SLTSSSVW+N+PVA   L  +R LSFE+EIR K+
Sbjct: 6   LKDLLEEAKRRTILVAIFSLFLAYAMSLTSSSVWINLPVAILVLAALRRLSFEVEIRWKL 65

Query: 379 XXXXXXXXXXXXXKNQXXXXXXXXXXXXXIHWRRKIDSPIIEEALDGFTRRIVQEFVTNS 558
                                          WR + DSP++E A+D  T+ I+ E+VTN 
Sbjct: 66  FESERSTTSNLHQLGIHDPLLSEASHAVVNRWRHQFDSPVVEAAVDDLTKGIIDEWVTNL 125

Query: 559 WYSALSPDQDVPEQIRLLV 615
           WYS+++PD++ PE++R+L+
Sbjct: 126 WYSSVTPDREAPEELRILI 144


>tr|A9SD38|A9SD38_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_77750 PE=4 SV=1
          Length = 1322

 Score =  118 bits (296), Expect = 3e-25
 Identities = 69/179 (38%), Positives = 105/179 (58%), Gaps = 7/179 (3%)
 Frame = +1

Query: 100 LYCSTLLRESSSEQCK-SKMRGSATQ-AMKRTVHRLKGLVEEAKRRTILWAIFIAGFAYL 273
           LY + L+ E S  Q + S +R      +++ T+  LK L+EEAKRRTIL AI +   AY+
Sbjct: 63  LYGNALVSECSDWQSRISGLRIVCEHLSIRLTMETLKDLLEEAKRRTILVAILVLIVAYV 122

Query: 274 LSLTSSSVWLNVPVAAAFLILIRYLSFELEIRRKVXXXXXXXXXXXXXKNQXXXXXXXXX 453
           +SLTSSSVW+N+PV+   L  +R LSFE+E R +                +         
Sbjct: 123 MSLTSSSVWINLPVSILVLAALRRLSFEVEFRWRPRINQSRPQYALHQHRRQLTNYDPLL 182

Query: 454 XXXXIH-----WRRKIDSPIIEEALDGFTRRIVQEFVTNSWYSALSPDQDVPEQIRLLV 615
                H     WRR+IDS ++E+A+D  TR ++ EF+T+ WYS+++PDQ+ PE++R+L+
Sbjct: 183 SGLPTHVAATRWRRQIDSLVVEKAVDELTRCVIDEFITSLWYSSITPDQEAPEELRILL 241


>tr|A7P7B1|A7P7B1_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034391001
           PE=4 SV=1
          Length = 1064

 Score =  116 bits (290), Expect = 1e-24
 Identities = 56/135 (41%), Positives = 85/135 (62%)
 Frame = +1

Query: 199 LKGLVEEAKRRTILWAIFIAGFAYLLSLTSSSVWLNVPVAAAFLILIRYLSFELEIRRKV 378
           ++ LVEEAK+R +  AI + G +YL+SLTSSSVW N+P AA+ +I+IRYLS + E+RRK 
Sbjct: 10  VRDLVEEAKKRFVFLAICVVGLSYLMSLTSSSVWFNLPAAASLIIIIRYLSLDFEMRRKA 69

Query: 379 XXXXXXXXXXXXXKNQXXXXXXXXXXXXXIHWRRKIDSPIIEEALDGFTRRIVQEFVTNS 558
                          +               WRRK++S ++E+A+D FTR +V E+VT+ 
Sbjct: 70  AAYNSKPSSANTVSQK--KSPEGPKIIEKFDWRRKVNSSVVEDAIDQFTRHLVSEWVTDL 127

Query: 559 WYSALSPDQDVPEQI 603
           WYS ++PD++ PE++
Sbjct: 128 WYSRITPDKEGPEEL 142


>tr|A7P9B0|A7P9B0_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036497001
           PE=4 SV=1
          Length = 1003

 Score =  109 bits (272), Expect = 2e-22
 Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 1/148 (0%)
 Frame = +1

Query: 184 RTVHRLKGLVEEAKRRTILWAIFIAGFAYLLSLTSSSVWLNVPVAAAFLILIRYLSFELE 363
           + +  L+ L+EEAK RT+ WA+ I   +Y LS TS S+W+N+P++   +  +R LS E+E
Sbjct: 2   KAMETLQDLIEEAKLRTVWWALCIFAISYFLSHTSKSMWMNIPISILLVSALRILSNEVE 61

Query: 364 IRRKVXXXXXXXXXXXXXKNQXXXXXXXXXXXXXI-HWRRKIDSPIIEEALDGFTRRIVQ 540
            R +V             K Q                W+RKIDSPI+E A+ GF  +I++
Sbjct: 62  FRWRVRSVPRLTFLSHLEKKQLSVNDSRLATSPPPPKWKRKIDSPIVEAAISGFIDKILK 121

Query: 541 EFVTNSWYSALSPDQDVPEQIRLLVIDI 624
           +FV + WYS ++PD++ PE IR +++D+
Sbjct: 122 DFVVDLWYSDITPDREAPELIRAVIMDV 149


>tr|A5AN73|A5AN73_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027626 PE=4 SV=1
          Length = 1027

 Score =  108 bits (269), Expect = 3e-22
 Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 1/148 (0%)
 Frame = +1

Query: 184 RTVHRLKGLVEEAKRRTILWAIFIAGFAYLLSLTSSSVWLNVPVAAAFLILIRYLSFELE 363
           + +  L+ L+EEAK RT+ WA+ I   +Y LS TS S+W+N+P++   +  +R LS E+E
Sbjct: 2   KAMETLQDLIEEAKLRTVWWALCIFAISYFLSHTSKSMWMNIPISILLVSALRILSNEVE 61

Query: 364 IRRKVXXXXXXXXXXXXXKNQXXXXXXXXXXXXXI-HWRRKIDSPIIEEALDGFTRRIVQ 540
            R +V             K Q                W+RKIDSPI+E A  GF  +I++
Sbjct: 62  FRWRVRSVPXLTFLSHLEKKQLSVNDSRLATSPPPPKWKRKIDSPIVEAAXSGFIDKILK 121

Query: 541 EFVTNSWYSALSPDQDVPEQIRLLVIDI 624
           +FV + WYS ++PD++ PE IR +++D+
Sbjct: 122 DFVVDLWYSDITPDREAPELIRAVIMDV 149


>tr|Q75HY6|Q75HY6_ORYSJ Os05g0583500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0035N21.8 PE=4 SV=1
          Length = 1136

 Score =  106 bits (265), Expect = 1e-21
 Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
 Frame = +1

Query: 166 ATQAMKRTVHRLKGLVEEAKRRTILWAIFIAGFAYLLSLTSSSVWLNVPVAAAFLILIRY 345
           AT       H ++ L EE K+R +L  +F  G A+L+SLTSSSVW+N+P A A ++L RY
Sbjct: 2   ATAGGPGRAHTVRDLAEEGKKRAVLLLVFAFGLAFLMSLTSSSVWINLPFATALIVLFRY 61

Query: 346 LSFELEIRRKVXXXXXXXXXXXXXKNQ--XXXXXXXXXXXXXIHWRRKIDSPIIEEALDG 519
           +S + + RRK              K +                 W+ K++SP +E A++ 
Sbjct: 62  ISLDYDFRRKSTTTTDNDASRALTKTKSIEPNKIPSIQKDGKSDWKSKVNSPPVEAAIEQ 121

Query: 520 FTRRIVQEFVTNSWYSALSPDQDVPEQIRLLVIDI 624
           FTR +V E+VT+ WYS ++PD++ PE++  +V ++
Sbjct: 122 FTRHLVTEWVTDLWYSRVTPDKEGPEELINIVNNV 156


>tr|A2Y7Y8|A2Y7Y8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21157 PE=4 SV=1
          Length = 1136

 Score =  106 bits (265), Expect = 1e-21
 Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
 Frame = +1

Query: 166 ATQAMKRTVHRLKGLVEEAKRRTILWAIFIAGFAYLLSLTSSSVWLNVPVAAAFLILIRY 345
           AT       H ++ L EE K+R +L  +F  G A+L+SLTSSSVW+N+P A A ++L RY
Sbjct: 2   ATAGGPGRAHTVRDLAEEGKKRAVLLLVFAFGLAFLMSLTSSSVWINLPFATALIVLFRY 61

Query: 346 LSFELEIRRKVXXXXXXXXXXXXXKNQ--XXXXXXXXXXXXXIHWRRKIDSPIIEEALDG 519
           +S + + RRK              K +                 W+ K++SP +E A++ 
Sbjct: 62  ISLDYDFRRKSTTTTDNDASRALTKTKSIEPNKIPSIQKDGKSDWKSKVNSPPVEAAIEQ 121

Query: 520 FTRRIVQEFVTNSWYSALSPDQDVPEQIRLLVIDI 624
           FTR +V E+VT+ WYS ++PD++ PE++  +V ++
Sbjct: 122 FTRHLVTEWVTDLWYSRVTPDKEGPEELINIVNNV 156


>tr|Q0IUF9|Q0IUF9_ORYSJ Os11g0159000 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0159000 PE=4 SV=1
          Length = 252

 Score =  103 bits (256), Expect = 1e-20
 Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
 Frame = +1

Query: 178 MKRTVHRLKGLVEEAKRRTILWAIFIAGFAYLLSLTSSSVWLNVPVAAAFLILIRYLSFE 357
           M+R +  +  L+EEAK RT+ WA+ +   +Y L+ TS S+W NVP++   L  +RYLSF+
Sbjct: 1   MRRAMMGVDDLIEEAKVRTVWWALCVFAISYFLTHTSKSMWTNVPMSILILAFLRYLSFK 60

Query: 358 LEIRRKVXXXXXXXXXXXXXKNQXXXXXXXXXXXXXI-HWRRKIDSPIIEEALDGFTRRI 534
           +E   +              K Q             +  WRRK+ SP +E A + F   I
Sbjct: 61  VEFHWRGQPVQKQTHLSQLSKRQLSAHDHRLSTVAPVSRWRRKVGSPSVEAAFESFIENI 120

Query: 535 VQEFVTNSWYSALSPDQDVPEQIRLLVI 618
           +++FV + WYS+++PD++ PE IR L++
Sbjct: 121 LRDFVVDLWYSSITPDREAPELIRGLIL 148


>tr|A3B781|A3B781_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018903 PE=4 SV=1
          Length = 1136

 Score =  101 bits (252), Expect = 3e-20
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
 Frame = +1

Query: 166 ATQAMKRTVHRLKGLVEEAKRRTILWAIFIAGFAYLLSLTSSSVWLNVPVAAAFLILIRY 345
           AT       H ++ L EE K+R +L  +   G A L+SLTSSSVW+N+P A A ++L RY
Sbjct: 2   ATAGGPGRAHTVRDLAEEGKKRAVLLLVSAFGLASLMSLTSSSVWINLPFATALIVLFRY 61

Query: 346 LSFELEIRRKVXXXXXXXXXXXXXKNQ--XXXXXXXXXXXXXIHWRRKIDSPIIEEALDG 519
           +S + + RRK              K +                 W+ K++SP +E A++ 
Sbjct: 62  ISLDYDFRRKSTTTTDNDASRALTKTKSIEPNKIPSIQKDGKSDWKSKVNSPPVEAAIEQ 121

Query: 520 FTRRIVQEFVTNSWYSALSPDQDVPEQIRLLVIDI 624
           FTR +V E+VT+ WYS ++PD++ PE++  +V ++
Sbjct: 122 FTRHLVTEWVTDLWYSRVTPDKEGPEELINIVNNV 156


>tr|A9SDH2|A9SDH2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_127974 PE=4 SV=1
          Length = 982

 Score =  101 bits (251), Expect = 4e-20
 Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
 Frame = +1

Query: 208 LVEEAKRRTILWAIFIAGFAYLLSLTSSSVWLNVPVAAAFLILIRYLSFELEIRRKVXXX 387
           L+EEAKRR I+        AY++SLTSSSVW+N+P+A   L  +R +SF++EIR ++   
Sbjct: 7   LLEEAKRRAIMVVAVAVTLAYMMSLTSSSVWINLPIAIIVLAALRRVSFDIEIRWRLPPT 66

Query: 388 XXXXXXXXXXKNQXXXXXXXXXXXXXIH-----WRRKIDSPIIEEALDGFTRRIVQEFVT 552
                      ++              H     WR   +SP +E A+D FTR ++ E+VT
Sbjct: 67  QTSAVPQLPMLHRRQLSSHDPLLSEASHTAANRWRHYFNSPAVEAAVDEFTRSLIDEWVT 126

Query: 553 NSWYSALSPDQDVPEQIRLLV 615
           N WYS+++ D++ PE++R+L+
Sbjct: 127 NLWYSSVTSDEEAPEELRILI 147