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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960770
Clone id TST39A01NGRL0008_E23
Library
Length 162
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_E23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATCTTGCCTTCATCGACAGCAGACCTTTGCAGCTCGCGGTATCTGCAGAAATGGCCAAGA
TCAAGGTGCATGAATTGCGAGCCAAGAGCAAGGGGGAGCTGCAGAATCAGCTCAAGGATC
TAAAAGCAGAGCTTGCTCTGCTGAGAGTATCCAAGGTGACTG
■■Homology search results ■■ -
sp_hit_id Q9SF53
Definition sp|Q9SF53|RL351_ARATH 60S ribosomal protein L35-1 OS=Arabidopsis thaliana
Align length 37
Score (bit) 62.4
E-value 7.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960770|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_E23, 5'
         (162 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SF53|RL351_ARATH 60S ribosomal protein L35-1 OS=Arabidopsis...    62   7e-10
sp|Q9M5L0|RL35_EUPES 60S ribosomal protein L35 OS=Euphorbia esul...    61   2e-09
sp|Q9LZ41|RL354_ARATH 60S ribosomal protein L35-4 OS=Arabidopsis...    60   4e-09
sp|O80626|RL352_ARATH 60S ribosomal protein L35-2 OS=Arabidopsis...    57   4e-08
sp|Q9M3D2|RL353_ARATH 60S ribosomal protein L35-3 OS=Arabidopsis...    55   8e-08
sp|Q29361|RL35_PIG 60S ribosomal protein L35 OS=Sus scrofa GN=RP...    47   3e-05
sp|Q3MHM7|RL35_BOVIN 60S ribosomal protein L35 OS=Bos taurus GN=...    47   3e-05
sp|Q6PBC1|RL35_XENTR 60S ribosomal protein L35 OS=Xenopus tropic...    46   5e-05
sp|P17078|RL35_RAT 60S ribosomal protein L35 OS=Rattus norvegicu...    46   5e-05
sp|Q69CJ9|RL35_OPHHA 60S ribosomal protein L35 OS=Ophiophagus ha...    46   5e-05
sp|Q6ZWV7|RL35_MOUSE 60S ribosomal protein L35 OS=Mus musculus G...    46   5e-05
sp|P42766|RL35_HUMAN 60S ribosomal protein L35 OS=Homo sapiens G...    46   5e-05
sp|Q8JHJ1|RL35_DANRE 60S ribosomal protein L35 OS=Danio rerio GN...    46   5e-05
sp|Q98TF7|RL35_CHICK 60S ribosomal protein L35 OS=Gallus gallus ...    46   5e-05
sp|Q6UZF7|RL35_HIPCM 60S ribosomal protein L35 OS=Hippocampus co...    45   9e-05
sp|P52817|RL35_BABBO 60S ribosomal protein L35 OS=Babesia bovis ...    44   2e-04
sp|Q90YT4|RL35_ICTPU 60S ribosomal protein L35 OS=Ictalurus punc...    43   4e-04
sp|Q5DVH6|RL35_PLAFE 60S ribosomal protein L35 OS=Platichthys fl...    43   6e-04
sp|Q4N756|RL35_THEPA 60S ribosomal protein L35 OS=Theileria parv...    42   7e-04
sp|Q2VA69|RL36_THELE 60S ribosomal protein L35 OS=Theileria lest...    42   0.001
sp|P39741|RL35_YEAST 60S ribosomal protein L35 OS=Saccharomyces ...    42   0.001
sp|Q4UIF8|RL35_THEAN 60S ribosomal protein L35 OS=Theileria annu...    40   0.003
sp|P34662|RL35_CAEEL 60S ribosomal protein L35 OS=Caenorhabditis...    39   0.008
sp|Q8L805|RL35_WHEAT 60S ribosomal protein L35 OS=Triticum aesti...    35   0.090
sp|Q54J23|RL35_DICDI 60S ribosomal protein L35 OS=Dictyostelium ...    35   0.12 
sp|O74904|RL35_SCHPO 60S ribosomal protein L35 OS=Schizosaccharo...    33   0.34 
sp|Q9FJP3|RK29_ARATH 50S ribosomal protein L29, chloroplastic OS...    33   0.58 
sp|A3DJI0|RL29_CLOTH 50S ribosomal protein L29 OS=Clostridium th...    32   0.99 
sp|A7GJ66|RL29_CLOBL 50S ribosomal protein L29 OS=Clostridium bo...    32   1.3  
sp|A5I7J8|RL29_CLOBH 50S ribosomal protein L29 OS=Clostridium bo...    32   1.3  

>sp|Q9SF53|RL351_ARATH 60S ribosomal protein L35-1 OS=Arabidopsis
           thaliana GN=RPL35A PE=2 SV=1
          Length = 123

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 31/37 (83%), Positives = 35/37 (94%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR KSK +LQNQLK+LKAELALLRV+KVT
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVT 37


>sp|Q9M5L0|RL35_EUPES 60S ribosomal protein L35 OS=Euphorbia esula
           GN=RPL35 PE=2 SV=1
          Length = 123

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 31/37 (83%), Positives = 34/37 (91%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR K+K EL NQLKDLKAELALLRV+KVT
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVT 37


>sp|Q9LZ41|RL354_ARATH 60S ribosomal protein L35-4 OS=Arabidopsis
           thaliana GN=RPL35D PE=2 SV=1
          Length = 123

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR KSK +LQNQLK+ KAELALLRV+KVT
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVT 37


>sp|O80626|RL352_ARATH 60S ribosomal protein L35-2 OS=Arabidopsis
           thaliana GN=RPL35B PE=2 SV=1
          Length = 123

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR KSK +L  QLK+ KAELALLRV+KVT
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVT 37


>sp|Q9M3D2|RL353_ARATH 60S ribosomal protein L35-3 OS=Arabidopsis
           thaliana GN=RPL35C PE=2 SV=1
          Length = 123

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR KSK +L  QLK+LKAELA LRV+KVT
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVT 37


>sp|Q29361|RL35_PIG 60S ribosomal protein L35 OS=Sus scrofa GN=RPL35
           PE=2 SV=3
          Length = 123

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MAKIK  +LR K K EL  QL+DLK EL+ LRV+KVT
Sbjct: 1   MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVT 37


>sp|Q3MHM7|RL35_BOVIN 60S ribosomal protein L35 OS=Bos taurus
           GN=RPL35 PE=2 SV=3
          Length = 123

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MAKIK  +LR K K EL  QL+DLK EL+ LRV+KVT
Sbjct: 1   MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVT 37


>sp|Q6PBC1|RL35_XENTR 60S ribosomal protein L35 OS=Xenopus
           tropicalis GN=rpl35 PE=2 SV=3
          Length = 123

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MAKIK  +LR K K EL  QL DLK EL+ LRV+KVT
Sbjct: 1   MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVT 37


>sp|P17078|RL35_RAT 60S ribosomal protein L35 OS=Rattus norvegicus
           GN=Rpl35 PE=1 SV=3
          Length = 123

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MAKIK  +LR K K EL  QL DLK EL+ LRV+KVT
Sbjct: 1   MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVT 37


>sp|Q69CJ9|RL35_OPHHA 60S ribosomal protein L35 OS=Ophiophagus
           hannah GN=RPL35 PE=2 SV=3
          Length = 123

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MAKIK  +LR K K EL  QL DLK EL+ LRV+KVT
Sbjct: 1   MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVT 37
tr_hit_id A9NQ49
Definition tr|A9NQ49|A9NQ49_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 37
Score (bit) 62.0
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960770|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_E23, 5'
         (162 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NQ49|A9NQ49_PICSI Putative uncharacterized protein OS=Picea...    62   1e-08
tr|A9NL14|A9NL14_PICSI Putative uncharacterized protein OS=Picea...    62   1e-08
tr|B3TLM6|B3TLM6_ELAGV 60S ribosomal protein L35 OS=Elaeis guine...    62   2e-08
tr|A9SXL8|A9SXL8_PHYPA Predicted protein OS=Physcomitrella paten...    61   3e-08
tr|A9RF60|A9RF60_PHYPA Predicted protein OS=Physcomitrella paten...    60   4e-08
tr|Q7XMJ1|Q7XMJ1_ORYSJ Os04g0376000 protein OS=Oryza sativa subs...    60   5e-08
tr|A9SPV0|A9SPV0_PHYPA Predicted protein OS=Physcomitrella paten...    60   5e-08
tr|A9RBH9|A9RBH9_PHYPA Predicted protein (Fragment) OS=Physcomit...    60   5e-08
tr|Q0WWT8|Q0WWT8_ARATH Ribosomal protein L35 like protein OS=Ara...    60   7e-08
tr|A9NTY0|A9NTY0_PICSI Putative uncharacterized protein OS=Picea...    59   2e-07
tr|Q53U38|Q53U38_SOLLC Similar to 60S ribosomal protein L35 OS=S...    58   2e-07
tr|Q308A4|Q308A4_SOLTU Putative uncharacterized protein OS=Solan...    58   2e-07
tr|B8AT03|B8AT03_ORYSI Putative uncharacterized protein OS=Oryza...    58   2e-07
tr|B8AT01|B8AT01_ORYSI Putative uncharacterized protein OS=Oryza...    58   2e-07
tr|A9PE55|A9PE55_POPTR Putative uncharacterized protein OS=Popul...    58   3e-07
tr|A9PBI5|A9PBI5_POPTR Putative uncharacterized protein OS=Popul...    57   4e-07
tr|A9PK09|A9PK09_POPJC Putative uncharacterized protein OS=Popul...    57   5e-07
tr|A9P9X6|A9P9X6_POPTR Putative uncharacterized protein OS=Popul...    57   5e-07
tr|Q6K667|Q6K667_ORYSJ Os02g0503400 protein OS=Oryza sativa subs...    57   6e-07
tr|B8AIB7|B8AIB7_ORYSI Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|B6TIR8|B6TIR8_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    57   6e-07
tr|B6TC92|B6TC92_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    57   6e-07
tr|B6SZ64|B6SZ64_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    57   6e-07
tr|B6SX73|B6SX73_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    57   6e-07
tr|A3A759|A3A759_ORYSJ Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|B6T0L1|B6T0L1_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    56   8e-07
tr|Q45KX4|Q45KX4_RHEAU Putative 60S ribosomal protein L35 OS=Rhe...    56   1e-06
tr|B6T2K5|B6T2K5_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    56   1e-06
tr|A9PCH3|A9PCH3_POPTR Putative uncharacterized protein OS=Popul...    56   1e-06
tr|Q0WT25|Q0WT25_ARATH Ribosomal protein L35 like protein OS=Ara...    55   1e-06

>tr|A9NQ49|A9NQ49_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 123

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR KSK EL NQLKDLKAELALLRV+KVT
Sbjct: 1   MARIKVHELRNKSKAELLNQLKDLKAELALLRVAKVT 37


>tr|A9NL14|A9NL14_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 55

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR KSK EL NQLKDLKAELALLRV+KVT
Sbjct: 1   MARIKVHELRNKSKAELLNQLKDLKAELALLRVAKVT 37


>tr|B3TLM6|B3TLM6_ELAGV 60S ribosomal protein L35 OS=Elaeis
           guineensis var. tenera PE=2 SV=1
          Length = 123

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 31/37 (83%), Positives = 34/37 (91%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR KSK +L NQLKDLKAELALLRV+KVT
Sbjct: 1   MARIKVHELRGKSKADLLNQLKDLKAELALLRVAKVT 37


>tr|A9SXL8|A9SXL8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_189477 PE=4 SV=1
          Length = 123

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 31/37 (83%), Positives = 34/37 (91%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MAKIKVHELR+KSK EL NQLK+LKAELA LRV+KVT
Sbjct: 1   MAKIKVHELRSKSKNELLNQLKELKAELAALRVAKVT 37


>tr|A9RF60|A9RF60_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_62237 PE=4 SV=1
          Length = 123

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MAKIKVHELR KSK EL NQLK+LKAELA LRV+KVT
Sbjct: 1   MAKIKVHELRTKSKNELLNQLKELKAELAALRVAKVT 37


>tr|Q7XMJ1|Q7XMJ1_ORYSJ Os04g0376000 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0006N15.8 PE=2 SV=2
          Length = 123

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR K+K ELQ QLKDLKAEL+LLRV+KVT
Sbjct: 1   MARIKVHELRGKNKAELQAQLKDLKAELSLLRVAKVT 37


>tr|A9SPV0|A9SPV0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_214555 PE=4 SV=1
          Length = 123

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 31/37 (83%), Positives = 34/37 (91%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MAKIKVHELRAKSK EL +QLK+LKAELA LRV+KVT
Sbjct: 1   MAKIKVHELRAKSKNELLSQLKELKAELAALRVAKVT 37


>tr|A9RBH9|A9RBH9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_110724 PE=4 SV=1
          Length = 122

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +3

Query: 54  AKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           AKIKVHELRAKSK EL NQLK+LKAELA LRV+KVT
Sbjct: 1   AKIKVHELRAKSKNELLNQLKELKAELAALRVAKVT 36


>tr|Q0WWT8|Q0WWT8_ARATH Ribosomal protein L35 like protein
           OS=Arabidopsis thaliana GN=At5g02610 PE=2 SV=1
          Length = 123

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR KSK +LQNQLK+ KAELALLRV+KVT
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVT 37


>tr|A9NTY0|A9NTY0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 123

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 30/37 (81%), Positives = 33/37 (89%)
 Frame = +3

Query: 51  MAKIKVHELRAKSKGELQNQLKDLKAELALLRVSKVT 161
           MA+IKVHELR KSK EL NQL +LKAELALLRV+KVT
Sbjct: 1   MARIKVHELRIKSKAELLNQLTELKAELALLRVAKVT 37