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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960776
Clone id TST39A01NGRL0008_F05
Library
Length 474
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_F05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCATTGTCATCCTCGAGCGGCTTTTCAAAGTGGGTCAGGAGTTGACTGTGCGTGTGGTG
CGGCGAGGAGGCGGTGGCCGTGAGATTCTTTCCATAAAGAAGCCAGAGTTTGCGCCTAAT
ACTGATCCGAGGTACATCTTTAGTCAGCGTTGGGGGAACTCAGGAGATAAGCCCACTGGC
TCCTAGTGCTTCTTGCACCTTTTCACATGTTAAGAGTATAGTCATTTTGATGCTGAAGCT
CAATCTGATCTGGCTATGCAAGAAAAGCATATCGGGTGTCTCTTTTAGGGTCTATGTATG
CTTGTTATTTGGTTCCATGCAGATTATTAGCCAGCAGTGTTTGGTAGTCAATGGACTTTG
GTTTGGAATTGTATCTGCTTGCCTAGTAACATGATGTGTGTGCCATCCATTCAAAGTTTA
TTTCAGTTTTGAATGAATGTATGTTGGCATGTAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8X7B7
Definition sp|Q8X7B7|TRPC_ECO57 Tryptophan biosynthesis protein trpCF OS=Escherichia coli O157:H7
Align length 68
Score (bit) 32.0
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960776|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_F05, 5'
         (452 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8X7B7|TRPC_ECO57 Tryptophan biosynthesis protein trpCF OS=Es...    32   1.3  
sp|P46504|YLX8_CAEEL Uncharacterized protein F23F12.8 OS=Caenorh...    31   2.8  
sp|P00909|TRPC_ECOLI Tryptophan biosynthesis protein trpCF OS=Es...    30   6.3  
sp|O13518|YPL14_YEAST Putative uncharacterized protein YPL114W O...    29   8.2  
sp|Q6CUG3|PALI2_KLULA pH-response regulator palI/RIM9 homolog 2 ...    29   8.2  
sp|Q9RGZ5|MRPA_BACPF Na(+)/H(+) antiporter subunit A OS=Bacillus...    29   8.2  

>sp|Q8X7B7|TRPC_ECO57 Tryptophan biosynthesis protein trpCF
           OS=Escherichia coli O157:H7 GN=trpC PE=3 SV=2
          Length = 452

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
 Frame = -2

Query: 340 TLLANNLHGTK*QAYIDPKRDTRYAFLA*PDQI---------ELQHQNDYTLNM*KGARS 188
           +L+A  LHG + Q YID  R+   A +A    +         ELQH + Y L+  +G   
Sbjct: 327 SLVAVQLHGNEDQLYIDTLREALPAHVAIWKALSVGETLPARELQHVDKYVLDNGQGGSG 386

Query: 187 TRSQWAYL 164
            R  W+ L
Sbjct: 387 QRFDWSLL 394


>sp|P46504|YLX8_CAEEL Uncharacterized protein F23F12.8
            OS=Caenorhabditis elegans GN=F23F12.8 PE=2 SV=2
          Length = 980

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
 Frame = -3

Query: 441  YIHSKLK*TLNGWHTHHVTRQADTIPNQSPLTTKHCWLIICMEPNNKHT*TLKETPDMLF 262
            +IH  +   ++G H H V R     P  +P +       I    N+  T ++K   D+  
Sbjct: 837  HIHGSV---VSGGHNHQVVRPIAPTPTIAPNSNVPVSYQISQSQNSLSTNSIKSEIDLSH 893

Query: 261  LH---SQIRLSFSIKMTILLTCEKVQEALGASGLIS*VPPTLTK 139
            +H    +++  F  +M   L  +   E  GA  L S V P L K
Sbjct: 894  IHPLFPRVQPDFLSRMLPSLNFKMHDENSGAQSLGSVVKPVLKK 937


>sp|P00909|TRPC_ECOLI Tryptophan biosynthesis protein trpCF
           OS=Escherichia coli (strain K12) GN=trpC PE=1 SV=3
          Length = 452

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
 Frame = -2

Query: 340 TLLANNLHGTK*QAYIDPKRDTRYAFLA*PDQI---------ELQHQNDYTLNM*KGARS 188
           +L A  LHG + Q YID  R+   A +A    +         E QH + Y L+  +G   
Sbjct: 327 SLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSG 386

Query: 187 TRSQWAYL 164
            R  W+ L
Sbjct: 387 QRFDWSLL 394


>sp|O13518|YPL14_YEAST Putative uncharacterized protein YPL114W
           OS=Saccharomyces cerevisiae GN=YPL114W PE=5 SV=1
          Length = 139

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 170 SPLAPSASCTFSHVKSIVILMLKLNLIWLCKKSIS 274
           SP + + SCTFS V S+  + +   ++ +C K+++
Sbjct: 10  SPPSTNMSCTFSSVMSVCFMTMSATVLPICGKAVT 44


>sp|Q6CUG3|PALI2_KLULA pH-response regulator palI/RIM9 homolog 2
           OS=Kluyveromyces lactis GN=KLLA0C05060g PE=3 SV=1
          Length = 225

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 209 VKSIVILMLKLNLIWLCKKSIS-GVSFRVYVCLLFGSMQIISQQCLVVNGLWFGIVSACL 385
           VK +++++L L L++ C  +IS  ++  +Y+                 NG  FG+   C 
Sbjct: 3   VKIVLVVLLTLALVFECFSTISVPITIGLYIS--------------EYNGYRFGVFGWCK 48

Query: 386 VT*CVCHPFKVYFS 427
           V   VC P ++ +S
Sbjct: 49  VDRSVCSPIRIGYS 62


>sp|Q9RGZ5|MRPA_BACPF Na(+)/H(+) antiporter subunit A OS=Bacillus
           pseudofirmus GN=mrpA PE=1 SV=2
          Length = 805

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
 Frame = +2

Query: 110 LRLILIRGTSLVSVGGTQEIS-PLAPSASCTFSH------------VKSIVILMLKLNLI 250
           L +  I+  S+ S GG  E + P  PS    F+             +  I  L++  ++ 
Sbjct: 41  LFIYFIQYLSITSTGGVVEHTIPWVPSLGINFTVFVDGLSLLFALLITGIGTLVILYSIF 100

Query: 251 WLCKKSISGVSFRVYVCLLFGSM--QIISQQCLVVNGLW 361
           +L KK+ S  +F VY+ +  G+M   ++S   +V+   W
Sbjct: 101 YLSKKTESLNNFYVYLLMFMGAMLGVVLSDNLIVLYVFW 139
tr_hit_id Q2U922
Definition tr|Q2U922|Q2U922_ASPOR Predicted protein OS=Aspergillus oryzae
Align length 93
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960776|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_F05, 5'
         (452 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2U922|Q2U922_ASPOR Predicted protein OS=Aspergillus oryzae G...    35   2.5  
tr|Q4Q363|Q4Q363_LEIMA Putative uncharacterized protein OS=Leish...    34   4.2  
tr|A4HAQ5|A4HAQ5_LEIBR Putative uncharacterized protein OS=Leish...    33   9.3  
tr|A2R9D1|A2R9D1_ASPNC Contig An17c0040, complete genome OS=Aspe...    33   9.3  
tr|A1CZA2|A1CZA2_NEOFI Integral membrane protein OS=Neosartorya ...    33   9.3  

>tr|Q2U922|Q2U922_ASPOR Predicted protein OS=Aspergillus oryzae
           GN=AO090701000204 PE=4 SV=1
          Length = 289

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = +2

Query: 173 PLAPSASCTFSHVKSIVILMLKLNLIWLCKKSISGVS---FRVYVCLLFGSMQIISQQCL 343
           P A   +  F  + S+   + KL L+W CK+ +   S   +  Y  +L G+M +++  C+
Sbjct: 99  PTASKFNLLFQILFSLSSSITKLALLWFCKRLLGAGSKGLYTTYNIVLIGAMVLVALLCI 158

Query: 344 VVNGLWFGIVSACLVT*CVCHPFKVYFSFE*MY 442
           +        +  C+     C P   Y+ F+  Y
Sbjct: 159 I-------FLFVCIFQ---CSPIHAYWDFQPTY 181


>tr|Q4Q363|Q4Q363_LEIMA Putative uncharacterized protein OS=Leishmania
            major GN=LmjF34.1390 PE=4 SV=1
          Length = 4796

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -3

Query: 252  QIRLSFSIKMTILLTCEKVQEALGASGL---IS*VPPTLTKDVPRISIRRKLWLLYGKNL 82
            Q+ L   +  T  L+   +Q A+ ASG    +  VPP  ++ VP   +RR++ L  G   
Sbjct: 3426 QVLLHTLVTFTNRLSMPLLQVAVNASGTYDAVGVVPPASSQCVPVQVLRRRVALALGNFA 3485

Query: 81   TATASSPHHTHSQL 40
              +ASSP  T  QL
Sbjct: 3486 EVSASSPALTQMQL 3499


>tr|A4HAQ5|A4HAQ5_LEIBR Putative uncharacterized protein OS=Leishmania
            braziliensis GN=LbrM20_V2.1420 PE=4 SV=1
          Length = 4784

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -3

Query: 252  QIRLSFSIKMTILLTCEKVQEALGASGL---IS*VPPTLTKDVPRISIRRKLWLLYGKNL 82
            Q+ L   +  T  L+   +Q  L ASG    I  +PP  ++ VP   +RR++ L  G + 
Sbjct: 3414 QVLLHTLVTFTNRLSIALLQVGLNASGTYDAIGVIPPASSQCVPVQVLRRRVTLALGNSA 3473

Query: 81   TATASSPHHTHSQL 40
             A+  SP  T  +L
Sbjct: 3474 EASTPSPSLTQMEL 3487


>tr|A2R9D1|A2R9D1_ASPNC Contig An17c0040, complete genome
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An17g00940 PE=4 SV=1
          Length = 423

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = +2

Query: 173 PLAPSASCTFSHVKSIVILMLKLNLIWLCKKSISGVS---FRVYVCLLFGSMQIISQQCL 343
           P+    +  F    S+   + KL+++W CK+ I   S   +RVY  ++  S   ++  C+
Sbjct: 99  PVVTKYNLGFQITFSLSCSITKLSVLWFCKRLIGTGSKGLYRVYNIVVIVSFIFVALCCI 158

Query: 344 VVNGLWFGIVSACLVT*CVCHPFKVYFSFE*MY 442
           V            LV+   C P   Y+  E MY
Sbjct: 159 VF----------LLVSIFQCSPIHAYWDLEPMY 181


>tr|A1CZA2|A1CZA2_NEOFI Integral membrane protein OS=Neosartorya
           fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181)
           GN=NFIA_036440 PE=4 SV=1
          Length = 397

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = +2

Query: 200 FSHVKSIVILMLKLNLIWLCKKSISGVS---FRVYVCLLFGSMQIISQQCLVVNGLWFGI 370
           F  + S+   + KL+L+W CK+ +   S   +R Y   L G M  +S  C +   L F I
Sbjct: 108 FQILFSLASSVTKLSLLWFCKRLLGAGSKGLYRTYNWCLIGGMAFVSLSCALF--LLFSI 165

Query: 371 VSACLVT*CVCHPFKVYFSFE*MY 442
                     C+P   Y+     Y
Sbjct: 166 FQ--------CNPIHAYWDLAPTY 181