DK960780
Clone id TST39A01NGRL0008_F09
Library
Length 684
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_F09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTCTGATCTCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCCACCATGCCCTCCAGCTC
CGGATCATCACCAGAGAGAGCTCAATACGGAAGAGAGAGAAGCAAAGCGGCCGCATGGGC
GTGGTACCAGCGTGGAGGGGCGGCCAGTGGCGGCTCGCTCTGCATACAAGCTGGCAGCAG
CACTGCTCTCATGGTGAGGGGAAAGTATATGCAGAGAATAAGCACAGATGGAAATAGTAG
AGGACATGACAATCAACAAGAGAGTAGTAAAGGAATGGCTCATGTGGAGCACAAAGCTAG
CAAGTGTAGACGCCTGCCACCTTCGCGCTTCAAGCAGGAGGCAGACAAACTTGCGGCGGT
GAGTCGATGGCGATGCGCCGGCTCTGGTGCTGCTTGTCCACAATCTTTATTTTCTGATGA
AGAAGATCATCAGCTCATGTGTGGTTCATATCATGACACCCCACACTTACTTGATGCAGC
ACATGCTGATCACATATTGTATTCCACATCATCATCTAATCTACCTTCGCCATCCTCCTC
TATTCCACCGCTGCCTTTTCTACATCGCGCCGCGGTGTCGGCAGATGATCCTCCGCTGCA
TCACAGTCGCTGGTTGGATAGTCTCCTTGGAACCAGCAACAGGAAGAGTACCTCCTCATT
GTATGTAGACAATGAGTTGGCCTC
■■Homology search results ■■ -
sp_hit_id P62932
Definition sp|P62932|FBX40_MOUSE F-box only protein 40 OS=Mus musculus
Align length 90
Score (bit) 33.1
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960780|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_F09, 5'
(684 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P62932|FBX40_MOUSE F-box only protein 40 OS=Mus musculus GN=F... 33 1.4
sp|Q0VPD2|Y1518_ALCBS UPF0276 protein ABO_1518 OS=Alcanivorax bo... 31 7.0

>sp|P62932|FBX40_MOUSE F-box only protein 40 OS=Mus musculus
GN=Fbxo40 PE=2 SV=1
Length = 710

Score = 33.1 bits (74), Expect = 1.4
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = -2

Query: 341 PPA*SAKVAGVYTC*LCAPHEPFLYYSLVDCHVL--YYFHLCLFSAYTFPSP*EQCCC-- 174
PPA G + P EP + ++ CH+L FH+C S +T P EQ C
Sbjct: 8 PPALHRHCEGCFNRHCHVPVEPSVSCLVISCHLLCGATFHMCKESEHTLLCPLEQVPCLN 67

Query: 173 -QLVCRAS--RHWPPLHAGTTPMRPLCFSL 93
+ C S RH H P +C S+
Sbjct: 68 SEYGCPLSMARHKLAKHLQVCPASVVCCSM 97


>sp|Q0VPD2|Y1518_ALCBS UPF0276 protein ABO_1518 OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=ABO_1518 PE=3 SV=1
Length = 299

Score = 30.8 bits (68), Expect = 7.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = +3

Query: 465 TYLMQHML------ITYCIPHHHLIYLRHPPLFHRCLFYIAPRCRQM 587
++L QH + ++YC H HL L P ++Y+A R RQ+
Sbjct: 90 SFLKQHNIRRYTEHLSYCSDHGHLYDLMPIPFTQEAVYYVADRIRQV 136


tr_hit_id A4XQF6
Definition tr|A4XQF6|A4XQF6_PSEMY FMN-dependent alpha-hydroxy acid dehydrogenase OS=Pseudomonas mendocina (strain ymp)
Align length 52
Score (bit) 34.3
E-value 7.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960780|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_F09, 5'
(684 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4XQF6|A4XQF6_PSEMY FMN-dependent alpha-hydroxy acid dehydrog... 34 7.6
tr|B6MH40|B6MH40_BRAFL Putative uncharacterized protein OS=Branc... 34 7.7
tr|A2YU54|A2YU54_ORYSI Putative uncharacterized protein OS=Oryza... 34 9.9
tr|B6K928|B6K928_TOXGO 26S proteasome non-ATPase regulatory subu... 34 9.9
tr|A7T0I7|A7T0I7_NEMVE Predicted protein (Fragment) OS=Nematoste... 34 9.9

>tr|A4XQF6|A4XQF6_PSEMY FMN-dependent alpha-hydroxy acid
dehydrogenase OS=Pseudomonas mendocina (strain ymp)
GN=Pmen_0804 PE=4 SV=1
Length = 389

Score = 34.3 bits (77), Expect = 7.6
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = +2

Query: 86 YGRERSKAAAWAWYQRGGAASGGSLCIQAGSSTALMVRGKYMQRISTDGNSR 241
Y RER AWA Y GGAA SL + L +RG+ +Q +S GN+R
Sbjct: 41 YARERMSEQAWA-YLAGGAADELSLADNRAAFERLRLRGRVLQDLS-GGNTR 90


>tr|B6MH40|B6MH40_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_123125 PE=4 SV=1
Length = 498

Score = 34.3 bits (77), Expect = 7.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1

Query: 109 GRMGVVPAWRGGQWRLALHTSWQQHCSHGEGKVYAEN 219
G+ V+PA R R+ HT+W Q+ HG G+ Y E+
Sbjct: 15 GQASVIPAQRASYRRVCYHTNWSQY-RHGVGQFYPED 50


>tr|A2YU54|A2YU54_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_28864 PE=4 SV=1
Length = 216

Score = 33.9 bits (76), Expect = 9.9
Identities = 25/71 (35%), Positives = 31/71 (43%)
Frame = +2

Query: 110 AAWAWYQRGGAASGGSLCIQAGSSTALMVRGKYMQRISTDGNSRGHDNQQESSKGMAHVE 289
AA A AAS S AGS +V K+ +GN G D Q ++ A E
Sbjct: 36 AAAAAAAAAAAASAASSTAGAGSRGNNLVLFKWTPMNGANGNGGGGDGDQAAAAAAAAEE 95

Query: 290 HKASKCRRLPP 322
KA+K RR P
Sbjct: 96 EKATKRRRYVP 106


>tr|B6K928|B6K928_TOXGO 26S proteasome non-ATPase regulatory subunit
2, putative OS=Toxoplasma gondii ME49 GN=TGME49_113410
PE=4 SV=1
Length = 1091

Score = 33.9 bits (76), Expect = 9.9
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3

Query: 396 VHNLYFLMKKIISSCVVHIMTPHTYLMQHMLITYCIPHHHLIYLRHPPLFHRCLFYIAP 572
+H+ FL+ + C+ IM HT L HM T +H+L+Y P + R LF +AP
Sbjct: 914 LHSDRFLINNVALGCLSVIM--HTCL--HMRTTILGKYHYLLYYLFPAMQPRMLFTVAP 968


>tr|A7T0I7|A7T0I7_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g64214 PE=4 SV=1
Length = 256

Score = 33.9 bits (76), Expect = 9.9
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3

Query: 378 PALVLLVHNLYFLMKKIISSCVVHIMTPHTYLMQHMLITYCIPHHHLIYLRHPPLFHRCL 557
P +L + Y L+K I C++ P+ LM + + +YC+P H++ Y P CL
Sbjct: 46 PYCLLKPYIPYCLLKHYIPYCLLKHYIPYCLLMPY-IPSYCLPKHYIPYCLLKPYIPYCL 104

Query: 558 F-YIAPRC 578
+ P C
Sbjct: 105 LKHYIPYC 112