NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960781
Clone id TST39A01NGRL0008_F10
Library
Length 625
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_F10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTCACAGAAGAAGTTTGGTTTGCTTCGTATCGCACGTAGTGTCTACGCGTTTTAGAGGCA
CAACGAAATCTGCTCGCAAAGAAGATGGAGTTCATTGTCAGAGCCTGGCATTCAGGAGCT
TTTATCTCGCGCTTCCTCAGTTCCCCATGGGATGCAGCACCTTCAATTGTTTCAGTTGCA
CAGTGGTTCTCTGAAACTACCCCATCTGTTGATTTGGCTTCTCTTTTCCTGTGCATCTCC
CTTGCCTTCCTTTTATTATTCTCGCTGCATCGTCTTTATTTTAGGAGGCTGCAGAGCAGA
TTGCGAAAAACCCTGATTCCCATGGCGGATGGTAGTTTGTCCCCGCATCTCAACATTTGC
AGTTCACAAACCCCAGATCAGATATTTATTTTGTCAGGACAGAGCAACATGGCAGGCAGA
GGTGGCGTTGAATCAAAGCATTACAAGGATGGCAGTGTTCTTAAGGAATGGGACCATGTT
GTACCTCCTGAATGTGATGCTGAGAAAGGGTCAATTTGGTGCTTAAATGGAAAGTTGGAT
TGGGTGGAAGCATGTGAACCTATGCATCATGATATCGATTTAGGTAAAGTTTGTGGTTTG
GGACCTGGTCTTGTATTTGCGGCTT
■■Homology search results ■■ -
sp_hit_id Q8L9J9
Definition sp|Q8L9J9|CAES_ARATH Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana
Align length 103
Score (bit) 100.0
E-value 8.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960781|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_F10, 5'
         (625 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L9J9|CAES_ARATH Probable carbohydrate esterase At4g34215 OS...   100   8e-21
sp|P35992|PTP10_DROME Tyrosine-protein phosphatase 10D OS=Drosop...    31   5.9  
sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60 ...    31   5.9  

>sp|Q8L9J9|CAES_ARATH Probable carbohydrate esterase At4g34215
           OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2
          Length = 260

 Score =  100 bits (248), Expect = 8e-21
 Identities = 56/103 (54%), Positives = 68/103 (66%), Gaps = 3/103 (2%)
 Frame = +1

Query: 322 MADGSLSPHLN---ICSSQTPDQIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPE 492
           M  GS++P  +   I S   P+QIFILSGQSNMAGRGGV   H+ +  V   WD ++PPE
Sbjct: 1   MEGGSITPGEDKPEIQSPIPPNQIFILSGQSNMAGRGGVFKDHHNNRWV---WDKILPPE 57

Query: 493 CDAEKGSIWCLNGKLDWVEACEPMHHDIDLGKVCGLGPGLVFA 621
           C A   SI  L+  L W EA EP+H DID GKVCG+GPG+ FA
Sbjct: 58  C-APNSSILRLSADLRWEEAHEPLHVDIDTGKVCGVGPGMAFA 99


>sp|P35992|PTP10_DROME Tyrosine-protein phosphatase 10D OS=Drosophila
            melanogaster GN=Ptp10D PE=1 SV=3
          Length = 1631

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -3

Query: 263  ENNKRKAREMHRKREAKSTDGVVSENHCATETIEGAASHGELRKREIKA 117
            EN    AREMH     +     + EN     TIEG  SH +L++ E +A
Sbjct: 1532 ENIVGPAREMHDNEGYEGQQVQLDENGDVVATIEGHLSHHDLQQAEAEA 1580


>sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60
            OS=Homo sapiens GN=DDX60 PE=2 SV=2
          Length = 1712

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 502  QHHIQEVQHGPIP*EHCHPCNALIQRHL 419
            + H+  ++HG I  +H HPC AL   H+
Sbjct: 987  EKHVCSIKHGDIHFDHFHPCAALTTDHI 1014
tr_hit_id A9RQK4
Definition tr|A9RQK4|A9RQK4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 82
Score (bit) 108.0
E-value 2.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960781|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_F10, 5'
         (625 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RQK4|A9RQK4_PHYPA Predicted protein OS=Physcomitrella paten...   108   2e-22
tr|A7P9P6|A7P9P6_VITVI Chromosome chr3 scaffold_8, whole genome ...    91   7e-17
tr|Q2HRI4|Q2HRI4_MEDTR Putative uncharacterized protein OS=Medic...    90   1e-16
tr|Q7XLK1|Q7XLK1_ORYSA OSJNBa0009K15.9 protein OS=Oryza sativa G...    89   2e-16
tr|Q0JEG9|Q0JEG9_ORYSJ Os04g0276600 protein OS=Oryza sativa subs...    89   2e-16
tr|Q01HJ1|Q01HJ1_ORYSA H0117D06-OSIGBa0088B06.7 protein OS=Oryza...    89   2e-16
tr|A3ARV5|A3ARV5_ORYSJ Putative uncharacterized protein OS=Oryza...    89   2e-16
tr|A2XRB5|A2XRB5_ORYSI Putative uncharacterized protein OS=Oryza...    89   2e-16
tr|B6UFW7|B6UFW7_MAIZE Receptor protein kinase-like protein OS=Z...    88   5e-16
tr|B6SJE4|B6SJE4_MAIZE Receptor protein kinase-like protein OS=Z...    88   5e-16
tr|Q0WNN6|Q0WNN6_ARATH Putative uncharacterized protein At3g5301...    85   3e-15
tr|Q84M76|Q84M76_ORYSJ Putative uncharacterized protein OSJNBa00...    81   5e-15
tr|A7NU22|A7NU22_VITVI Chromosome chr18 scaffold_1, whole genome...    83   1e-14
tr|Q0DLL8|Q0DLL8_ORYSJ Os03g0857500 protein (Fragment) OS=Oryza ...    81   6e-14
tr|A7NU21|A7NU21_VITVI Chromosome chr18 scaffold_1, whole genome...    75   3e-12
tr|Q84M79|Q84M79_ORYSJ Os03g0857600 protein OS=Oryza sativa subs...    73   1e-11
tr|A2XPA0|A2XPA0_ORYSI Putative uncharacterized protein OS=Oryza...    73   1e-11
tr|B6TUZ9|B6TUZ9_MAIZE Receptor protein kinase-like protein OS=Z...    72   3e-11
tr|Q9LF91|Q9LF91_ARATH Putative uncharacterized protein F8J2_180...    67   7e-10
tr|B8ANT0|B8ANT0_ORYSI Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|B4FT09|B4FT09_MAIZE Putative uncharacterized protein OS=Zea m...    65   3e-09
tr|Q7XSV9|Q7XSV9_ORYSJ OSJNBa0027H06.16 protein (Putative unchar...    55   3e-06
tr|Q25AD4|Q25AD4_ORYSA H0201G08.9 protein OS=Oryza sativa GN=H02...    55   3e-06
tr|B8AU99|B8AU99_ORYSI Putative uncharacterized protein OS=Oryza...    55   3e-06
tr|A3APY0|A3APY0_ORYSJ Putative uncharacterized protein OS=Oryza...    54   1e-05
tr|B4FL14|B4FL14_MAIZE Putative uncharacterized protein OS=Zea m...    50   1e-04
tr|A3I3A6|A3I3A6_9SPHI Probable acetyl xylan esterase AxeA OS=Al...    44   0.010
tr|Q01TY8|Q01TY8_SOLUE Putative uncharacterized protein OS=Solib...    42   0.023
tr|A6PQY6|A6PQY6_9BACT Putative uncharacterized protein OS=Victi...    42   0.023
tr|A6PUV4|A6PUV4_9BACT Putative uncharacterized protein OS=Victi...    41   0.067

>tr|A9RQK4|A9RQK4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_177306 PE=4 SV=1
          Length = 263

 Score =  108 bits (271), Expect = 2e-22
 Identities = 52/82 (63%), Positives = 62/82 (75%)
 Frame = +1

Query: 379 QIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPECDAEKGSIWCLNGKLDWVEACE 558
           +IFILSGQSNM+GRGG+++   KDGS  ++WD +VP EC AE GSI  LN  L+W EA E
Sbjct: 9   EIFILSGQSNMSGRGGMQTIVAKDGSTSRKWDGIVPAECAAEPGSILRLNKNLEWEEAHE 68

Query: 559 PMHHDIDLGKVCGLGPGLVFAA 624
           P H DID  K CG+GPGLVFAA
Sbjct: 69  PTHIDIDTSKACGVGPGLVFAA 90


>tr|A7P9P6|A7P9P6_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036650001
           PE=4 SV=1
          Length = 252

 Score = 90.5 bits (223), Expect = 7e-17
 Identities = 47/81 (58%), Positives = 53/81 (65%)
 Frame = +1

Query: 379 QIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPECDAEKGSIWCLNGKLDWVEACE 558
           QIFILSGQSNMAGRGGV   H        +WD VVPPEC  +  SI  LN +L W  A E
Sbjct: 17  QIFILSGQSNMAGRGGVNGHH--------KWDGVVPPECSPDS-SILRLNAQLHWESARE 67

Query: 559 PMHHDIDLGKVCGLGPGLVFA 621
           P+H DID  K CG+GPG+ FA
Sbjct: 68  PLHADIDTKKACGVGPGMSFA 88


>tr|Q2HRI4|Q2HRI4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula GN=MtrDRAFT_AC150207g1v2 PE=4 SV=1
          Length = 205

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 51/95 (53%), Positives = 60/95 (63%)
 Frame = +1

Query: 337 LSPHLNICSSQTPDQIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPECDAEKGSI 516
           ++PH   C   T D IFIL+GQSNMAGRGGV +          +WD  +PPEC     SI
Sbjct: 17  VTPH---CGKATKD-IFILAGQSNMAGRGGVLNG---------KWDGNIPPECKPNP-SI 62

Query: 517 WCLNGKLDWVEACEPMHHDIDLGKVCGLGPGLVFA 621
             LN KL W EA EP+H DID+GK CG+GPGL FA
Sbjct: 63  LKLNTKLKWEEAHEPLHADIDVGKTCGIGPGLAFA 97


>tr|Q7XLK1|Q7XLK1_ORYSA OSJNBa0009K15.9 protein OS=Oryza sativa
           GN=OSJNBa0009K15.9 PE=4 SV=3
          Length = 237

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 46/81 (56%), Positives = 53/81 (65%)
 Frame = +1

Query: 379 QIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPECDAEKGSIWCLNGKLDWVEACE 558
           +IF+LSGQSNMAGRGGV  +          WD VVPPEC A   S+  L   LDWVEA E
Sbjct: 2   RIFVLSGQSNMAGRGGVHHRR---------WDGVVPPEC-APCPSVLRLTAALDWVEARE 51

Query: 559 PMHHDIDLGKVCGLGPGLVFA 621
           P+H DID  K CG+GPG+ FA
Sbjct: 52  PLHADIDTAKTCGVGPGMAFA 72


>tr|Q0JEG9|Q0JEG9_ORYSJ Os04g0276600 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0276600 PE=2 SV=1
          Length = 237

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 46/81 (56%), Positives = 53/81 (65%)
 Frame = +1

Query: 379 QIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPECDAEKGSIWCLNGKLDWVEACE 558
           +IF+LSGQSNMAGRGGV  +          WD VVPPEC A   S+  L   LDWVEA E
Sbjct: 2   RIFVLSGQSNMAGRGGVHHRR---------WDGVVPPEC-APCPSVLRLTAALDWVEARE 51

Query: 559 PMHHDIDLGKVCGLGPGLVFA 621
           P+H DID  K CG+GPG+ FA
Sbjct: 52  PLHADIDTAKTCGVGPGMAFA 72


>tr|Q01HJ1|Q01HJ1_ORYSA H0117D06-OSIGBa0088B06.7 protein OS=Oryza
           sativa GN=H0117D06-OSIGBa0088B06.7 PE=4 SV=1
          Length = 237

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 46/81 (56%), Positives = 53/81 (65%)
 Frame = +1

Query: 379 QIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPECDAEKGSIWCLNGKLDWVEACE 558
           +IF+LSGQSNMAGRGGV  +          WD VVPPEC A   S+  L   LDWVEA E
Sbjct: 2   RIFVLSGQSNMAGRGGVHHRR---------WDGVVPPEC-APCPSVLRLTAALDWVEARE 51

Query: 559 PMHHDIDLGKVCGLGPGLVFA 621
           P+H DID  K CG+GPG+ FA
Sbjct: 52  PLHADIDTAKTCGVGPGMAFA 72


>tr|A3ARV5|A3ARV5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_013527 PE=4 SV=1
          Length = 237

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 46/81 (56%), Positives = 53/81 (65%)
 Frame = +1

Query: 379 QIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPECDAEKGSIWCLNGKLDWVEACE 558
           +IF+LSGQSNMAGRGGV  +          WD VVPPEC A   S+  L   LDWVEA E
Sbjct: 2   RIFVLSGQSNMAGRGGVHHRR---------WDGVVPPEC-APCPSVLRLTAALDWVEARE 51

Query: 559 PMHHDIDLGKVCGLGPGLVFA 621
           P+H DID  K CG+GPG+ FA
Sbjct: 52  PLHADIDTAKTCGVGPGMAFA 72


>tr|A2XRB5|A2XRB5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15173 PE=4 SV=1
          Length = 237

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 46/81 (56%), Positives = 53/81 (65%)
 Frame = +1

Query: 379 QIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPECDAEKGSIWCLNGKLDWVEACE 558
           +IF+LSGQSNMAGRGGV  +          WD VVPPEC A   S+  L   LDWVEA E
Sbjct: 2   RIFVLSGQSNMAGRGGVHHRR---------WDGVVPPEC-APCPSVLRLTAALDWVEARE 51

Query: 559 PMHHDIDLGKVCGLGPGLVFA 621
           P+H DID  K CG+GPG+ FA
Sbjct: 52  PLHADIDTAKTCGVGPGMAFA 72


>tr|B6UFW7|B6UFW7_MAIZE Receptor protein kinase-like protein OS=Zea
           mays PE=2 SV=1
          Length = 241

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 46/81 (56%), Positives = 52/81 (64%)
 Frame = +1

Query: 379 QIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPECDAEKGSIWCLNGKLDWVEACE 558
           +IF+LSGQSNMAGRGGV  KH         WD VVPPEC A   SI  L+    W EA E
Sbjct: 2   RIFVLSGQSNMAGRGGVHHKH---------WDGVVPPEC-APDPSILRLSSAQQWEEARE 51

Query: 559 PMHHDIDLGKVCGLGPGLVFA 621
           P+H DID  K CG+GPG+ FA
Sbjct: 52  PLHADIDTTKTCGIGPGMAFA 72


>tr|B6SJE4|B6SJE4_MAIZE Receptor protein kinase-like protein OS=Zea
           mays PE=2 SV=1
          Length = 243

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 46/81 (56%), Positives = 52/81 (64%)
 Frame = +1

Query: 379 QIFILSGQSNMAGRGGVESKHYKDGSVLKEWDHVVPPECDAEKGSIWCLNGKLDWVEACE 558
           +IF+LSGQSNMAGRGGV  KH         WD VVPPEC A   SI  L+    W EA E
Sbjct: 2   RIFVLSGQSNMAGRGGVHHKH---------WDGVVPPEC-APDPSILRLSSAQQWEEARE 51

Query: 559 PMHHDIDLGKVCGLGPGLVFA 621
           P+H DID  K CG+GPG+ FA
Sbjct: 52  PLHADIDTTKTCGIGPGMAFA 72