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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960787
Clone id TST39A01NGRL0008_F16
Library
Length 386
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_F16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CGACGTTAATGATGCAGGACGGGGCTGAACATGTGGAGTTTCTCAAGGGTGAGTAGCTAC
GAAGTGAAGCTTTCTAACTTCCACAGCAAGGGTTGTTTCGTTTTCTTTGGGTTGGTGGCA
TTGAAACTTGCAGGCGCAAAAAGTTTTGAGAAGTTTTGGCAACGTCTCCCGCATTCCTCT
ATGTCTGAATGATGCCAGATAGGTGATTCGTGCACATTTGGACACCCTGCAGTTGTTTCC
TTCTGTTACGTATTCGTGTTGTTATCACATGTAGAACGCTTTCTCTCATTCCACCTCCAT
GTTCTTGCCATGTGTTTTATTAGCTATCAGCAGACAGAAGCCTCTCCGTATCACATAAAG
TGATCTCTCTGGAAGGCCTCCGTGGT
■■Homology search results ■■ -
sp_hit_id Q8RWG8
Definition sp|Q8RWG8|RBP1B_ARATH Ran-binding protein 1 homolog b OS=Arabidopsis thaliana
Align length 59
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960787|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_F16, 5'
         (386 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RWG8|RBP1B_ARATH Ran-binding protein 1 homolog b OS=Arabido...    33   0.45 
sp|Q9W1K5|SESN_DROME Sestrin homolog OS=Drosophila melanogaster ...    33   0.58 
sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c OS=Arabido...    32   1.00 
sp|Q9LMK7|RBP1A_ARATH Ran-binding protein 1 homolog a OS=Arabido...    31   2.2  
sp|Q6DJR9|EPC2_XENTR Enhancer of polycomb homolog 2 OS=Xenopus t...    31   2.2  
sp|Q66JA8|EPC2_XENLA Enhancer of polycomb homolog 2 OS=Xenopus l...    31   2.2  
sp|P51202|YCF53_PORPU Uncharacterized protein ycf53 OS=Porphyra ...    30   2.9  
sp|Q89A27|SYK3_BUCBP Putative lysyl-tRNA synthetase OS=Buchnera ...    30   3.8  
sp|Q8BGE6|ATG4B_MOUSE Cysteine protease ATG4B OS=Mus musculus GN...    30   3.8  
sp|Q9Y4P1|ATG4B_HUMAN Cysteine protease ATG4B OS=Homo sapiens GN...    30   3.8  
sp|Q6PZ03|ATG4B_BOVIN Cysteine protease ATG4B OS=Bos taurus GN=A...    30   3.8  
sp|Q09572|SRD55_CAEEL Serpentine receptor class delta-55 OS=Caen...    30   4.9  
sp|Q32LS6|ABHDD_DANRE Abhydrolase domain-containing protein 13 O...    29   6.5  
sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus muscul...    29   8.4  

>sp|Q8RWG8|RBP1B_ARATH Ran-binding protein 1 homolog b
           OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2
          Length = 217

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -2

Query: 367 EITLCDTE-RLLSADS**NTWQEHGGGMRESVLHVITTRIRNRRKQLQGVQMCTNHLSG 194
           E T+ D + +L   D   + W+E G G  + + H ++ +IR   +Q + +++C NHL G
Sbjct: 48  EDTILDLKSKLYRFDKDGSQWKERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVG 106


>sp|Q9W1K5|SESN_DROME Sestrin homolog OS=Drosophila melanogaster
           GN=CG11299 PE=1 SV=2
          Length = 497

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = +1

Query: 22  GLNMWSFSRVSSYEVKLSNFHSKGCFVFFGLVALKLAGAKS 144
           G N WS S V    V LS+FHS   FVF   +  KL G  S
Sbjct: 145 GKNSWSLSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSS 185


>sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c
           OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1
          Length = 219

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 316 NTWQEHGGGMRESVLHVITTRIRNRRKQLQGVQMCTNHL 200
           N W+E G G  + + H  T ++R   +Q + +++C NHL
Sbjct: 63  NQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHL 101


>sp|Q9LMK7|RBP1A_ARATH Ran-binding protein 1 homolog a
           OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1
          Length = 228

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 316 NTWQEHGGGMRESVLHVITTRIRNRRKQLQGVQMCTNH 203
           N W+E G G  + + H  T +IR   +Q + +++C NH
Sbjct: 64  NQWKERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANH 101


>sp|Q6DJR9|EPC2_XENTR Enhancer of polycomb homolog 2 OS=Xenopus
           tropicalis GN=epc2 PE=2 SV=1
          Length = 804

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 195 ASFRHRGMRETLPKLLKTFCACKFQCHQPK 106
           AS RH   R +LP++L    +C+ QC QP+
Sbjct: 503 ASDRHCENRLSLPEILSNIKSCRLQCFQPR 532


>sp|Q66JA8|EPC2_XENLA Enhancer of polycomb homolog 2 OS=Xenopus
           laevis GN=epc2 PE=2 SV=1
          Length = 804

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 195 ASFRHRGMRETLPKLLKTFCACKFQCHQPK 106
           AS RH   R +LP++L    +C+ QC QP+
Sbjct: 503 ASDRHCENRLSLPEILSNIKSCRLQCFQPR 532


>sp|P51202|YCF53_PORPU Uncharacterized protein ycf53 OS=Porphyra
           purpurea GN=ycf53 PE=3 SV=1
          Length = 238

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 67  KLSNFHSKGCFVFFGLVALKLAGAKSFEKFWQRL 168
           +L N HSKG F FF    + LA  K++E+FW ++
Sbjct: 155 QLWNAHSKGKFGFFVQRQIWLALEKNWEQFWYKI 188


>sp|Q89A27|SYK3_BUCBP Putative lysyl-tRNA synthetase OS=Buchnera
           aphidicola subsp. Baizongia pistaciae GN=poxA PE=3 SV=1
          Length = 322

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 241 FCYVFVLLSHVERFLSFHLHVLAMCFISYQQ 333
           +C +F  +  VE+FL F L V+ + +ISYQ+
Sbjct: 118 YCNMFDFMKKVEKFLVFCLKVVQVKYISYQR 148


>sp|Q8BGE6|ATG4B_MOUSE Cysteine protease ATG4B OS=Mus musculus
           GN=Atg4b PE=1 SV=2
          Length = 393

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 356 M*YGEASVC**LIKHMARTWRWNERKR 276
           M + +A VC    +H+ R WRW +RKR
Sbjct: 81  MIFAQALVC----RHLGRDWRWTQRKR 103


>sp|Q9Y4P1|ATG4B_HUMAN Cysteine protease ATG4B OS=Homo sapiens
           GN=ATG4B PE=1 SV=1
          Length = 393

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 356 M*YGEASVC**LIKHMARTWRWNERKR 276
           M + +A VC    +H+ R WRW +RKR
Sbjct: 81  MIFAQALVC----RHLGRDWRWTQRKR 103
tr_hit_id B7FFC3
Definition tr|B7FFC3|B7FFC3_MEDTR Putative uncharacterized protein OS=Medicago truncatula
Align length 39
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960787|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_F16, 5'
         (386 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FFC3|B7FFC3_MEDTR Putative uncharacterized protein OS=Medic...    34   3.2  
tr|Q28ZG4|Q28ZG4_DROPS GA10899 OS=Drosophila pseudoobscura pseud...    34   3.2  
tr|B4GHT4|B4GHT4_DROPE GL16884 OS=Drosophila persimilis GN=GL168...    34   3.2  
tr|A9NU32|A9NU32_PICSI Putative uncharacterized protein OS=Picea...    34   4.2  
tr|B8LM68|B8LM68_PICSI Putative uncharacterized protein OS=Picea...    33   5.5  
tr|Q10MW8|Q10MW8_ORYSJ Os03g0292800 protein OS=Oryza sativa subs...    33   7.2  
tr|B8ALM1|B8ALM1_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.2  
tr|B5AJV3|B5AJV3_CUCMR Ran-binding protein 1 OS=Cucumis melo var...    33   7.2  
tr|B4QAY3|B4QAY3_DROSI GD11791 OS=Drosophila simulans GN=GD11791...    33   9.3  
tr|B4P9S3|B4P9S3_DROYA GE14320 OS=Drosophila yakuba GN=GE14320 P...    33   9.3  
tr|B4NMK7|B4NMK7_DROWI GK23074 OS=Drosophila willistoni GN=GK230...    33   9.3  
tr|B4KQ12|B4KQ12_DROMO GI19742 OS=Drosophila mojavensis GN=GI197...    33   9.3  
tr|B4J873|B4J873_DROGR GH21308 OS=Drosophila grimshawi GN=GH2130...    33   9.3  
tr|B4I8S4|B4I8S4_DROSE GM16042 OS=Drosophila sechellia GN=GM1604...    33   9.3  
tr|B3NPR5|B3NPR5_DROER GG22883 OS=Drosophila erecta GN=GG22883 P...    33   9.3  
tr|B3MFJ6|B3MFJ6_DROAN GF13078 OS=Drosophila ananassae GN=GF1307...    33   9.3  

>tr|B7FFC3|B7FFC3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 147

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 316 NTWQEHGGGMRESVLHVITTRIRNRRKQLQGVQMCTNHL 200
           N W+E G G  + + H +T ++R   +Q + +++C NHL
Sbjct: 61  NQWKERGAGTVKFLKHKVTGKVRLVMRQSKTLKICANHL 99


>tr|Q28ZG4|Q28ZG4_DROPS GA10899 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA10899 PE=4 SV=2
          Length = 450

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +1

Query: 22  GLNMWSFSRVSSYEVKLSNFHSKGCFVFFGLVALKLAGAKS 144
           G+N WS S V    V LS+FHS   FVF   +  KL G  S
Sbjct: 84  GINSWSLSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSS 124


>tr|B4GHT4|B4GHT4_DROPE GL16884 OS=Drosophila persimilis GN=GL16884
           PE=4 SV=1
          Length = 528

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +1

Query: 22  GLNMWSFSRVSSYEVKLSNFHSKGCFVFFGLVALKLAGAKS 144
           G+N WS S V    V LS+FHS   FVF   +  KL G  S
Sbjct: 143 GINSWSLSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSS 183


>tr|A9NU32|A9NU32_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 229

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -2

Query: 367 EITLCDTERLLSADS**NTWQEHGGGMRESVLHVITTRIRNRRKQLQGVQMCTNHL 200
           ++ L    +L   D   N W+E G G  + + H  TT++R   +Q + +++C NHL
Sbjct: 54  DVLLDMKSKLYRFDKDGNQWKERGVGTVKLLKHKETTKVRLVMRQSKTLKICANHL 109


>tr|B8LM68|B8LM68_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 171

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 316 NTWQEHGGGMRESVLHVITTRIRNRRKQLQGVQMCTNHL 200
           N W+E G G  + + H  TT++R   +Q + +++C NHL
Sbjct: 13  NQWKERGVGTVKLLKHKETTKVRLVMRQSKTLKICANHL 51


>tr|Q10MW8|Q10MW8_ORYSJ Os03g0292800 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0292800 PE=2 SV=1
          Length = 209

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -2

Query: 367 EITLCDTERLLSADS**NTWQEHGGGMRESVLHVITTRIRNRRKQLQGVQMCTNHL 200
           E+ L    +L   D   N W+E G G  + + H  T ++R   +Q + +++C NHL
Sbjct: 48  EVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETGKVRLVMRQAKTLKICANHL 103


>tr|B8ALM1|B8ALM1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11117 PE=4 SV=1
          Length = 209

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -2

Query: 367 EITLCDTERLLSADS**NTWQEHGGGMRESVLHVITTRIRNRRKQLQGVQMCTNHL 200
           E+ L    +L   D   N W+E G G  + + H  T ++R   +Q + +++C NHL
Sbjct: 48  EVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETGKVRLVMRQAKTLKICANHL 103


>tr|B5AJV3|B5AJV3_CUCMR Ran-binding protein 1 OS=Cucumis melo var.
           reticulatus PE=2 SV=1
          Length = 197

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 316 NTWQEHGGGMRESVLHVITTRIRNRRKQLQGVQMCTNHL 200
           N W+E G G  + + H  T R+R   +Q + +++C NHL
Sbjct: 62  NQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHL 100


>tr|B4QAY3|B4QAY3_DROSI GD11791 OS=Drosophila simulans GN=GD11791
           PE=4 SV=1
          Length = 497

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = +1

Query: 22  GLNMWSFSRVSSYEVKLSNFHSKGCFVFFGLVALKLAGAKS 144
           G N WS S V    V LS+FHS   FVF   +  KL G  S
Sbjct: 145 GKNSWSLSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSS 185


>tr|B4P9S3|B4P9S3_DROYA GE14320 OS=Drosophila yakuba GN=GE14320 PE=4
           SV=1
          Length = 495

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = +1

Query: 22  GLNMWSFSRVSSYEVKLSNFHSKGCFVFFGLVALKLAGAKS 144
           G N WS S V    V LS+FHS   FVF   +  KL G  S
Sbjct: 145 GKNSWSLSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSS 185