DK960792 |
Clone id |
TST39A01NGRL0008_F21 |
Library |
TST39 |
Length |
618 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_F21. 5' end sequence. |
Accession |
DK960792 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL98Contig1 |
Sequence |
ATGGATCCTCCGACTCTTAGTGCTGCCAAAAAGAGTGTGAAGAGCAAACCAGAATCATCT ATTTGGCGCGCAACCTGACGACTCGCCTTCTTTTACATCGACTGGAAAAGGAAGGGCTCC TGGCAAGCGAGGAAATCGATTCTATAAGAACATTGGTTTGGGGTTTAAGACACCAAGAGA AGCTATTGAAGGTACATACATTGACAAGAAGTGCCCTTTTACGGGCAACGTTTCTATCCG AGGGCGCATTTTGACTGGGACTGTTAACTGCGCAAAAATGACGAGGACAATAACTGTCAG GAGGGACTACTTGCATTTCGTGAAGAAATATCAAAGGTATGAGAAGAGGCATTCGAATTT GTCTGCCCACGTGTCTCCTTGCTTCCGTGTGAAAGAGGGGGACAAGGTTATTATCGGGCA GTGCCGGCCTCTTTCAAAGACTGTAAGATTCAACGTCTTGAAGGTCTTTCCTATGGGAGC CGCAGAGGGTGGCAAGAAGGCATTCACTGCAATGTAGTGTACCGTAGTTTTCCATCGAAC CTAATTTTTGTCTAAATTTCATGGGTACCTTGGACTCTTGTGCGAAGGTCACTATTTTGT GAAGCTAATGTTCACTGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P17093 |
Definition |
sp|P17093|RS11_SOYBN 40S ribosomal protein S11 OS=Glycine max |
Align length |
151 |
Score (bit) |
241.0 |
E-value |
3.0e-63 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S6F7 |
Definition |
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
152 |
Score (bit) |
251.0 |
E-value |
2.0e-65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960792|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_F21, 5' (618 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella paten... 251 2e-65 tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella paten... 251 2e-65 tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium ... 245 1e-63 tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 240 4e-62 tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea... 240 4e-62 tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 239 9e-62 tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medic... 238 2e-61 tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza... 238 3e-61 tr|Q7XIK5|Q7XIK5_ORYSJ Os07g0565000 protein OS=Oryza sativa subs... 237 5e-61 tr|B8AU50|B8AU50_ORYSI Putative uncharacterized protein OS=Oryza... 237 5e-61 tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medic... 236 6e-61 tr|A9P8K6|A9P8K6_POPTR Putative uncharacterized protein OS=Popul... 236 1e-60 tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 234 2e-60 tr|A9PC56|A9PC56_POPTR Putative uncharacterized protein OS=Popul... 234 3e-60 tr|Q0JBY8|Q0JBY8_ORYSJ Os04g0502300 protein OS=Oryza sativa subs... 233 5e-60 tr|Q01I56|Q01I56_ORYSA OSIGBa0112M24.1 protein OS=Oryza sativa G... 233 5e-60 tr|A7P608|A7P608_VITVI Chromosome chr4 scaffold_6, whole genome ... 232 1e-59 tr|Q8H4T5|Q8H4T5_ORYSJ Os07g0565100 protein OS=Oryza sativa subs... 229 1e-58 tr|A2XXG3|A2XXG3_ORYSI Putative uncharacterized protein OS=Oryza... 229 1e-58 tr|B6SIL5|B6SIL5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 228 2e-58 tr|A3AVB8|A3AVB8_ORYSJ Putative uncharacterized protein OS=Oryza... 226 6e-58 tr|A2XV92|A2XV92_ORYSI Putative uncharacterized protein OS=Oryza... 226 6e-58 tr|B6TDP8|B6TDP8_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 225 2e-57 tr|A4RYN3|A4RYN3_OSTLU Ribosomal protein S11, component of cytos... 225 2e-57 tr|Q7XLC9|Q7XLC9_ORYSJ Os04g0613600 protein OS=Oryza sativa subs... 223 5e-57 tr|A3BQN0|A3BQN0_ORYSJ Putative uncharacterized protein OS=Oryza... 223 7e-57 tr|A7QS26|A7QS26_VITVI Chromosome undetermined scaffold_155, who... 223 9e-57 tr|A8JHC3|A8JHC3_CHLRE Ribosomal protein S11 OS=Chlamydomonas re... 216 1e-54 tr|Q209Q5|Q209Q5_9CHLO 40S ribosomal protein S11 OS=Chlamydomona... 215 2e-54 tr|B8MGZ7|B8MGZ7_9EURO 40S ribosomal protein S11 OS=Talaromyces ... 194 3e-48
>tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163092 PE=3 SV=1 Length = 160
Score = 251 bits (642), Expect = 2e-65 Identities = 123/152 (80%), Positives = 135/152 (88%), Gaps = 1/152 (0%) Frame = +2
Query: 62 FGAQPDDSPSFTSTGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIR 241 F QP S ++ KG+A GK G RF+KN+GLGFKTPREAIEGTYIDKKCPFTG+VSIR Sbjct: 9 FLKQPKVFLSTKASSKGKAAGKAGTRFWKNVGLGFKTPREAIEGTYIDKKCPFTGDVSIR 68
Query: 242 GRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQ 421 GRILTGTVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKEGDKVIIGQ Sbjct: 69 GRILTGTVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKEGDKVIIGQ 128
Query: 422 CRPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 514 CRPLSKTVRFNVLKV PMGA++GG KK FTA+ Sbjct: 129 CRPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161124 PE=3 SV=1 Length = 160
Score = 251 bits (642), Expect = 2e-65 Identities = 123/152 (80%), Positives = 135/152 (88%), Gaps = 1/152 (0%) Frame = +2
Query: 62 FGAQPDDSPSFTSTGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIR 241 F QP S ++ KG+A GK G RF+KN+GLGFKTPREAIEGTYIDKKCPFTG+VSIR Sbjct: 9 FLKQPKVFLSTKASAKGKAAGKAGTRFWKNVGLGFKTPREAIEGTYIDKKCPFTGDVSIR 68
Query: 242 GRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQ 421 GRILTGTVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKEGDKVIIGQ Sbjct: 69 GRILTGTVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKEGDKVIIGQ 128
Query: 422 CRPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 514 CRPLSKTVRFNVLKV PMGA++GG KK FTA+ Sbjct: 129 CRPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium rubrum GN=rpS11 PE=2 SV=1 Length = 159
Score = 245 bits (626), Expect = 1e-63 Identities = 118/151 (78%), Positives = 129/151 (85%) Frame = +2
Query: 62 FGAQPDDSPSFTSTGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIR 241 F QP S +GKG+ PGK GNRF+KNIGLGFKTPR+AIEGTYIDKKCPFTGNVSIR Sbjct: 9 FLKQPKVFLSSNKSGKGKRPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCPFTGNVSIR 68
Query: 242 GRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQ 421 GRIL GT + AKM RTI VRR+YLH++KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQ Sbjct: 69 GRILAGTCHSAKMQRTIIVRRNYLHYIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQ 128
Query: 422 CRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 514 CRP+SKTVRFNVLKV P GAA GGKKAFT + Sbjct: 129 CRPISKTVRFNVLKVIPAGAASGGKKAFTGL 159
>tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 159
Score = 240 bits (613), Expect = 4e-62 Identities = 113/138 (81%), Positives = 125/138 (90%) Frame = +2
Query: 101 TGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGTVNCAKM 280 +GKG+ PGK GNRF+KNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL GT + AKM Sbjct: 22 SGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKM 81
Query: 281 TRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVL 460 RTI VRR+YLH+V+KYQRYEKRHSN++AH+SPCFRVKEGD VIIGQCRPLSKTVRFNVL Sbjct: 82 NRTIIVRRNYLHYVRKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVL 141
Query: 461 KVFPMGAAEGGKKAFTAM 514 KV P G+ GGKKAF A+ Sbjct: 142 KVIPAGSKGGGKKAFAAV 159
>tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 160
Score = 240 bits (613), Expect = 4e-62 Identities = 117/152 (76%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Frame = +2
Query: 62 FGAQPDDSPSFTSTGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIR 241 F QP S +GKG+ PGK GNRF+KN+GLGFKTP+EA++GTYIDKKCPFTGNVSIR Sbjct: 9 FLKQPKVFLSSKKSGKGKRPGKGGNRFFKNVGLGFKTPKEAVQGTYIDKKCPFTGNVSIR 68
Query: 242 GRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQ 421 GRIL GT AKMTRTI VRRDYLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQ Sbjct: 69 GRILAGTCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQ 128
Query: 422 CRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 514 CRPLSKTVRFNVLKV P G++ G KKAFTA+ Sbjct: 129 CRPLSKTVRFNVLKVIPAGSSSGSAKKAFTAI 160
>tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=2 SV=1 Length = 159
Score = 239 bits (610), Expect = 9e-62 Identities = 116/150 (77%), Positives = 127/150 (84%) Frame = +2
Query: 62 FGAQPDDSPSFTSTGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIR 241 F QP S +GKG+ PGK GNRF+K+IGLGFKTPREAIEGTYIDKKCPFTG VSIR Sbjct: 9 FLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIR 68
Query: 242 GRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQ 421 GRI+ GT + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQ Sbjct: 69 GRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQ 128
Query: 422 CRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 511 CRPLSKTVRFNV+KV P G+A GKKAFTA Sbjct: 129 CRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158
>tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 238 bits (607), Expect = 2e-61 Identities = 113/139 (81%), Positives = 125/139 (89%), Gaps = 1/139 (0%) Frame = +2
Query: 101 TGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGTVNCAKM 280 +GKG+ PGK GNRF+K++GLGFKTPREAI+GTYIDKKCPFTGNVSIRGRIL GT + AKM Sbjct: 22 SGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILAGTCHSAKM 81
Query: 281 TRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVL 460 RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQCRPLSKTVRFNVL Sbjct: 82 NRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVL 141
Query: 461 KVFPMGAAEG-GKKAFTAM 514 KV P G++ G GKKAFT M Sbjct: 142 KVIPAGSSSGAGKKAFTGM 160
>tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28229 PE=4 SV=1 Length = 159
Score = 238 bits (606), Expect = 3e-61 Identities = 112/137 (81%), Positives = 122/137 (89%) Frame = +2
Query: 101 TGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGTVNCAKM 280 +GKG+ PGK GNRF+KNIGLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ GT + AKM Sbjct: 22 SGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKM 81
Query: 281 TRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVL 460 RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQCRPLSKTVRFNV+ Sbjct: 82 NRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVI 141
Query: 461 KVFPMGAAEGGKKAFTA 511 KV P G+ GGKKAF A Sbjct: 142 KVIPAGSTGGGKKAFIA 158
>tr|Q7XIK5|Q7XIK5_ORYSJ Os07g0565000 protein OS=Oryza sativa subsp. japonica GN=OJ1773_H01.103 PE=2 SV=1 Length = 161
Score = 237 bits (604), Expect = 5e-61 Identities = 118/152 (77%), Positives = 127/152 (83%), Gaps = 2/152 (1%) Frame = +2
Query: 62 FGAQPDDSPSFTSTGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIR 241 F QP S +GKG+ PGK GNRF+K+IGLGFKTPREAIEGTYIDKKCPFTG VSIR Sbjct: 9 FLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIR 68
Query: 242 GRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQ 421 GRI+ GT + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQ Sbjct: 69 GRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQ 128
Query: 422 CRPLSKTVRFNVLKVFPMGA--AEGGKKAFTA 511 CRPLSKTVRFNVLKV P G+ GGKKAFTA Sbjct: 129 CRPLSKTVRFNVLKVIPAGSTGGSGGKKAFTA 160
>tr|B8AU50|B8AU50_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17372 PE=4 SV=1 Length = 161
Score = 237 bits (604), Expect = 5e-61 Identities = 118/152 (77%), Positives = 127/152 (83%), Gaps = 2/152 (1%) Frame = +2
Query: 62 FGAQPDDSPSFTSTGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIR 241 F QP S +GKG+ PGK GNRF+K+IGLGFKTPREAIEGTYIDKKCPFTG VSIR Sbjct: 9 FLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIR 68
Query: 242 GRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQ 421 GRI+ GT + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQ Sbjct: 69 GRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQ 128
Query: 422 CRPLSKTVRFNVLKVFPMGA--AEGGKKAFTA 511 CRPLSKTVRFNVLKV P G+ GGKKAFTA Sbjct: 129 CRPLSKTVRFNVLKVIPAGSTGGSGGKKAFTA 160
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