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NBDC - LSDB Archive
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DK960804
Clone id TST39A01NGRL0008_G09
Library
Length 487
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_G09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCCTAGTTGGACCCTGTTCGCCCCCAAGAGCCCCAACCCGCTGGCCATCTCTAATGGCAG
CCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTC
CTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCCGAAA
AGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCA
CGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCTG
CCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGC
CTTCATCCGCGTGCTGGGCTTTTTTTTTCCCACGCAGGTGCAGGTCTCCGGCTTCCTTGT
CCAGAAGGGGGCTGTCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGGCATGAATGCCTG
CTTCCCA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 127
Score (bit) 172.0
E-value 6.0e-43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960804|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_G09, 5'
         (487 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   172   6e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   171   1e-42
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   169   5e-42
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   168   1e-41
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   167   2e-41
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   167   2e-41
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   167   3e-41
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   166   4e-41
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   166   4e-41
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   166   4e-41
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   166   4e-41
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   166   5e-41
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   166   5e-41
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   166   5e-41
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   166   7e-41
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   165   9e-41
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   165   9e-41
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   165   9e-41
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   165   9e-41
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   165   1e-40
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   165   1e-40
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   165   1e-40
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   164   2e-40
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   164   2e-40
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   164   3e-40
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   164   3e-40
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   164   3e-40
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   163   3e-40
sp|P18566|RBS2_ORYSJ Ribulose bisphosphate carboxylase small cha...   162   6e-40
sp|Q0INY7|RBS1_ORYSJ Ribulose bisphosphate carboxylase small cha...   162   8e-40

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  172 bits (437), Expect = 6e-43
 Identities = 77/127 (60%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
 Frame = +2

Query: 50  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVY 226
           SNG RV  M VW P   KK+ETLSYLPPLS E ++K++D+++R  W PC+EF+ + G VY
Sbjct: 50  SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVY 109

Query: 227 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFFFPTQVQV 406
           REH H  GYYDGRYW MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GF    QVQ 
Sbjct: 110 REHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQC 169

Query: 407 SGFLVQK 427
             F+V K
Sbjct: 170 ISFIVAK 176


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  171 bits (434), Expect = 1e-42
 Identities = 79/137 (57%), Positives = 97/137 (70%)
 Frame = +2

Query: 17  FAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPC 196
           FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD+++R GW PC
Sbjct: 41  FADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPC 97

Query: 197 IEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVL 376
           IEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K YP+ F R++
Sbjct: 98  IEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRII 157

Query: 377 GFFFPTQVQVSGFLVQK 427
           GF    QVQ   FL  K
Sbjct: 158 GFDNTRQVQCISFLTYK 174


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  169 bits (429), Expect = 5e-42
 Identities = 78/127 (61%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
 Frame = +2

Query: 50  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVY 226
           SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK+VD+++RK   PC+EF+ + G VY
Sbjct: 52  SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVY 111

Query: 227 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFFFPTQVQV 406
           REH    GYYDGRYW MWKLPMFGC D++ VL+E+ EC K YP AFIR++GF    QVQ+
Sbjct: 112 REHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQI 171

Query: 407 SGFLVQK 427
             F+  K
Sbjct: 172 ISFIAYK 178


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score =  168 bits (425), Expect = 1e-41
 Identities = 75/126 (59%), Positives = 94/126 (74%)
 Frame = +2

Query: 50  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 229
           SNGSRV  M VW PY NKKFETLSYLP L+ EQ+ K+V+++++  W PC+EF++ G + R
Sbjct: 60  SNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKR 119

Query: 230 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFFFPTQVQVS 409
            + +  GYYDGRYWVMWKLPMFGC +A+ VL E+ ECAK YP AFIRV+GF    QVQ  
Sbjct: 120 VYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCI 179

Query: 410 GFLVQK 427
            F+V K
Sbjct: 180 SFIVHK 185


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  167 bits (424), Expect = 2e-41
 Identities = 74/126 (58%), Positives = 93/126 (73%)
 Frame = +2

Query: 50  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 229
           SNG RV  M VW P+ N KFETLSYLP L+ EQ+ K+V++++R  W PC+EFD  GS+ R
Sbjct: 44  SNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISR 103

Query: 230 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFFFPTQVQVS 409
           ++    GYYDGRYWVMWKLPMFGC +A+ V+ E+ ECAK YP+AFIRV+GF    QVQ  
Sbjct: 104 KYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCI 163

Query: 410 GFLVQK 427
            F+V K
Sbjct: 164 SFIVHK 169


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  167 bits (424), Expect = 2e-41
 Identities = 78/127 (61%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
 Frame = +2

Query: 50  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 229
           +NGSRVS M VW+PY+N KFETLSYLPPLS + +AKQ+D++++ GW PCIEFD  G+V R
Sbjct: 51  TNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTR 110

Query: 230 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEY-PEAFIRVLGFFFPTQVQV 406
           E     GYYDGRYW MWKLPMFGC D+A+VLREI EC K Y  + +IR LGF    QVQ 
Sbjct: 111 EGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQC 170

Query: 407 SGFLVQK 427
           + F+V +
Sbjct: 171 ASFIVHQ 177


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  167 bits (422), Expect = 3e-41
 Identities = 74/127 (58%), Positives = 93/127 (73%), Gaps = 1/127 (0%)
 Frame = +2

Query: 50  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVY 226
           SNG RV+ M VW P   KKFETLSYLP L+  ++AK+VD+++R  W PC+EF+ + G VY
Sbjct: 48  SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVY 107

Query: 227 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFFFPTQVQV 406
           REH +  GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GF    QVQ 
Sbjct: 108 REHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQC 167

Query: 407 SGFLVQK 427
             F+  K
Sbjct: 168 ISFIAYK 174


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  166 bits (421), Expect = 4e-41
 Identities = 76/129 (58%), Positives = 94/129 (72%), Gaps = 1/129 (0%)
 Frame = +2

Query: 50  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVY 226
           SNG RV  M VW P   KKFETLSYLPPLSSE +AK+VD+++RK W PC+EF+ + G VY
Sbjct: 53  SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVY 112

Query: 227 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFFFPTQVQV 406
           RE+    GYYDGRYW MWKLPMFGC D++ VL+E+ E  K YP++FIR++GF    QVQ 
Sbjct: 113 RENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQC 172

Query: 407 SGFLVQKGA 433
             F+  K A
Sbjct: 173 ISFIAYKPA 181


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  166 bits (421), Expect = 4e-41
 Identities = 76/126 (60%), Positives = 89/126 (70%)
 Frame = +2

Query: 50  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 229
           SNG RVS M VW P   KKFETLSYLPPLS E +AK+VD+++R  W PCIEF K G VYR
Sbjct: 50  SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109

Query: 230 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFFFPTQVQVS 409
           E+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E  K YPE F+R++GF    QVQ  
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169

Query: 410 GFLVQK 427
            F+  K
Sbjct: 170 SFIAYK 175


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  166 bits (421), Expect = 4e-41
 Identities = 76/126 (60%), Positives = 89/126 (70%)
 Frame = +2

Query: 50  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 229
           SNG RVS M VW P   KKFETLSYLPPLS E +AK+VD+++R  W PCIEF K G VYR
Sbjct: 50  SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109

Query: 230 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFFFPTQVQVS 409
           E+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E  K YPE F+R++GF    QVQ  
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169

Query: 410 GFLVQK 427
            F+  K
Sbjct: 170 SFIAYK 175
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 139
Score (bit) 256.0
E-value 3.0e-67
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960804|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_G09, 5'
         (487 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   256   3e-67
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   179   5e-44
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   177   2e-43
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   177   3e-43
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   177   3e-43
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   176   4e-43
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   174   2e-42
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   174   2e-42
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   173   4e-42
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   171   1e-41
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   170   3e-41
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   170   4e-41
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   170   4e-41
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|B8AHT7|B8AHT7_ORYSI Putative uncharacterized protein OS=Oryza...   167   2e-40
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c...   167   3e-40
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   167   3e-40
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   167   3e-40
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   167   3e-40

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  256 bits (655), Expect = 3e-67
 Identities = 118/139 (84%), Positives = 129/139 (92%)
 Frame = +2

Query: 11  TLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWT 190
           TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAKQV++MVRKGWT
Sbjct: 33  TLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWT 92

Query: 191 PCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIR 370
           PCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAECAKEYP AFIR
Sbjct: 93  PCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAECAKEYPTAFIR 152

Query: 371 VLGFFFPTQVQVSGFLVQK 427
           VLGF    QVQV+GFLV+K
Sbjct: 153 VLGFDAKRQVQVAGFLVKK 171


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  179 bits (455), Expect = 5e-44
 Identities = 86/144 (59%), Positives = 103/144 (71%), Gaps = 3/144 (2%)
 Frame = +2

Query: 5   SWTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKG 184
           S TLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQVDFM+++ 
Sbjct: 34  STTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDFMIQQN 93

Query: 185 WTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYP 355
             PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI EC + +P
Sbjct: 94  LIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQECKQSFP 153

Query: 356 EAFIRVLGFFFPTQVQVSGFLVQK 427
             ++RVLGF    QVQ+ GFLV +
Sbjct: 154 SCWVRVLGFDSKKQVQICGFLVAR 177


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  177 bits (449), Expect = 2e-43
 Identities = 83/142 (58%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
 Frame = +2

Query: 11  TLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWT 190
           TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQVD+M+++   
Sbjct: 41  TLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLI 100

Query: 191 PCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEA 361
           PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI EC  ++P  
Sbjct: 101 PCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSC 160

Query: 362 FIRVLGFFFPTQVQVSGFLVQK 427
           ++RVLGF    QVQ+ GFLV +
Sbjct: 161 WVRVLGFDSKKQVQICGFLVSR 182


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  177 bits (448), Expect = 3e-43
 Identities = 83/144 (57%), Positives = 103/144 (71%), Gaps = 3/144 (2%)
 Frame = +2

Query: 5   SWTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKG 184
           S TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQVD+M+++ 
Sbjct: 69  SATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQN 128

Query: 185 WTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYP 355
             PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI EC  ++P
Sbjct: 129 LIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFP 188

Query: 356 EAFIRVLGFFFPTQVQVSGFLVQK 427
             ++RVLGF    QVQ+ GFLV +
Sbjct: 189 SCWVRVLGFDSKKQVQICGFLVSR 212


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  177 bits (448), Expect = 3e-43
 Identities = 84/144 (58%), Positives = 101/144 (70%), Gaps = 3/144 (2%)
 Frame = +2

Query: 5   SWTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKG 184
           S TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QVD+M+++ 
Sbjct: 39  SATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQVDYMIQQN 98

Query: 185 WTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYP 355
             PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI EC   YP
Sbjct: 99  LIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKTSYP 158

Query: 356 EAFIRVLGFFFPTQVQVSGFLVQK 427
             ++RVLGF    QVQ+ GFLV +
Sbjct: 159 SCWVRVLGFDSKKQVQICGFLVAR 182


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  176 bits (447), Expect = 4e-43
 Identities = 85/144 (59%), Positives = 102/144 (70%), Gaps = 3/144 (2%)
 Frame = +2

Query: 5   SWTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKG 184
           S TL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQVDFM+++ 
Sbjct: 34  STTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDFMIQQN 93

Query: 185 WTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYP 355
             PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI EC + +P
Sbjct: 94  LIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQECKQSFP 153

Query: 356 EAFIRVLGFFFPTQVQVSGFLVQK 427
             ++RVLGF    QVQ+ GFLV +
Sbjct: 154 SCWVRVLGFDSKKQVQICGFLVAR 177


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  174 bits (441), Expect = 2e-42
 Identities = 77/127 (60%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
 Frame = +2

Query: 50  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVY 226
           SNG RV  M VW P   KK+ETLSYLPPLS E ++K++D+++R  W PC+EF+ + G VY
Sbjct: 50  SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVY 109

Query: 227 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFFFPTQVQV 406
           REH H  GYYDGRYW MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GF    QVQ 
Sbjct: 110 REHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQC 169

Query: 407 SGFLVQK 427
             F+V K
Sbjct: 170 ISFIVSK 176


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  174 bits (441), Expect = 2e-42
 Identities = 81/144 (56%), Positives = 103/144 (71%), Gaps = 3/144 (2%)
 Frame = +2

Query: 5   SWTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKG 184
           S TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQVD+M+++ 
Sbjct: 38  SATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQVDYMIQQN 97

Query: 185 WTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYP 355
             PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI EC  ++P
Sbjct: 98  LIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKTQFP 157

Query: 356 EAFIRVLGFFFPTQVQVSGFLVQK 427
             ++RVLGF    QVQ+ GFLV +
Sbjct: 158 SCWVRVLGFDSKKQVQICGFLVSR 181


>tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small
           chain OS=Populus trichocarpa PE=2 SV=1
          Length = 170

 Score =  173 bits (438), Expect = 4e-42
 Identities = 75/127 (59%), Positives = 94/127 (74%)
 Frame = +2

Query: 47  ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVY 226
           +SNGS+   M  W P +NKKFE LSYLPPLS + IAK++D+M++KGW PC+EFD++GSV 
Sbjct: 41  VSNGSKTFCMKTWNPINNKKFEALSYLPPLSEDSIAKEIDYMMKKGWIPCLEFDEVGSVR 100

Query: 227 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFFFPTQVQV 406
           REH    GYYDGRYW +WKLPMFGC D++ VL EI EC K YP+A+IR L F    Q Q 
Sbjct: 101 REHSRMPGYYDGRYWTLWKLPMFGCTDSSQVLEEIHECKKAYPDAYIRCLAFDNKHQGQC 160

Query: 407 SGFLVQK 427
             F++QK
Sbjct: 161 MAFVIQK 167


>tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small
           chain OS=Picea sitchensis PE=2 SV=1
          Length = 159

 Score =  171 bits (434), Expect = 1e-41
 Identities = 78/135 (57%), Positives = 98/135 (72%)
 Frame = +2

Query: 23  PKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIE 202
           PK+ N    SNG RV  M VW PY+N KFETLSYLP L+ EQ+ K+V++++R  W PC+E
Sbjct: 21  PKTSNGNGSSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLRNKWVPCLE 80

Query: 203 FDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGF 382
           FD+ G + R++    GYYDGRYWVMWKLPMFGC +A+ VL E+ ECAK YP+AFIRV+GF
Sbjct: 81  FDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGF 140

Query: 383 FFPTQVQVSGFLVQK 427
               QVQ   F+V K
Sbjct: 141 DNVRQVQCISFIVHK 155