DK960807
Clone id TST39A01NGRL0008_G12
Library
Length 218
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_G12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CTTTCATTGAGTGGGCTGAGATAATACCCTCAAAACCTGATCAGGGTAATGCCTGCGAAG
GGAGTGTGCCCTTTTGTTTTTAATGTTTGCAGGATTGGTTGCTTTTGGCTATTGCGACGG
GATGAAACTCACTTTGGGGTTCTCCATGAAAGTTTGTCAATTGCAAGTTGATGTTACAGG
GTGAGTAACTACCCCTTATTGTATGTGGCCAGTTGCTT
■■Homology search results ■■ -
sp_hit_id Q11181
Definition sp|Q11181|YPC4_CAEEL Uncharacterized protein C05D10.4 OS=Caenorhabditis elegans
Align length 55
Score (bit) 28.9
E-value 8.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960807|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_G12, 5'
(218 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q11181|YPC4_CAEEL Uncharacterized protein C05D10.4 OS=Caenorh... 29 8.3

>sp|Q11181|YPC4_CAEEL Uncharacterized protein C05D10.4
OS=Caenorhabditis elegans GN=C05D10.4 PE=2 SV=2
Length = 597

Score = 28.9 bits (63), Expect = 8.3
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -2

Query: 211 WPHTIRGSYSPCNINLQLTNFHGEPQSEFHPVAIAKSNQSCKH*KQKGTLPSQAL 47
WP T+R S +I+ +++ H +S A+ +S+ +C H + + PS+ L
Sbjct: 51 WPTTVRNS----SIHPHVSSAHPSYRSHSIDAAVNRSSSACFHSPHRPSFPSRGL 101


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960807|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_G12, 5'
(218 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******