DK960812 |
Clone id |
TST39A01NGRL0008_G17 |
Library |
TST39 |
Length |
674 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_G17. 5' end sequence. |
Accession |
DK960812 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1430Contig1 |
Sequence |
GGAAAAACCAGGCTAAATCTGACTCGAGCATGATCGAGACCTAGGAGTGACCACCATGCA CAGTAAATAGCGCGATGGGAATTTGAACAGACAATGGCGAGAAGGCTATTTCATGCCATA TCTCACCAGTCCATCGGTTGGCTAGCTACTCGCGGGACGCAAGTGCCTTCTCCAGTCTCC CATCTCTGCGATCCTGTAAGCAAGCACCCATGGATGCTTACGACCGTTCAGCATTATGCG AAACGGCGCAGCAAGTTTGCCAAAGATCCTTATGCGTGGATTAAAGTGGGAAAAGATGAG GAGTGCCCATCTTCACAGCCTAACAAAGGCAGTGTGAAGAACAGAAATCAAAAGAAGCGC ATGGCTCAGAAAGCTGCTTTTATCAAGGCAGAGGCTCAGAAACGTATTGCACAATGCAAA GCAGCTGATGCCAAGAGACTAGAAGCGCGAAAAAAGCGGTGGAAAGAGGGCGCAGCTCGG GCTCGAGCTTGGAAAGAAAAGAAGCTAGCAGAAGCAAAGGAAGCTGAAGCTCAGCAAGCT CAAGAACTGGCTGCAGCCTGAAGCCTTTAAGTTGGCTCTCTAAAGGAATGTTTTTCAGAA AATCATACATCTTTGTTGCTTTGATGATGGGTGCCCGGACACCAAGGAATAGAAGACGTG GTTGATGGTCTGCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q20970 |
Definition |
sp|Q20970|SYMC_CAEEL Methionyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans |
Align length |
92 |
Score (bit) |
33.5 |
E-value |
1.1 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RIG4 |
Definition |
tr|A9RIG4|A9RIG4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
77 |
Score (bit) |
68.2 |
E-value |
5.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960812|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_G17, 5' (674 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RIG4|A9RIG4_PHYPA Predicted protein OS=Physcomitrella paten... 68 5e-10 tr|B6TLW1|B6TLW1_MAIZE Putative uncharacterized protein OS=Zea m... 66 2e-09 tr|Q75IM4|Q75IM4_ORYSJ Os05g0126200 protein OS=Oryza sativa subs... 65 4e-09 tr|A2XZX6|A2XZX6_ORYSI Putative uncharacterized protein OS=Oryza... 65 4e-09 tr|A9NXH5|A9NXH5_PICSI Putative uncharacterized protein OS=Picea... 58 5e-07 tr|A5AL27|A5AL27_VITVI Putative uncharacterized protein (Chromos... 57 1e-06 tr|Q9SD44|Q9SD44_ARATH Putative uncharacterized protein F24M12.5... 55 5e-06 tr|Q8LEP2|Q8LEP2_ARATH Putative uncharacterized protein OS=Arabi... 55 5e-06 tr|B4PLV9|B4PLV9_DROYA GE23392 OS=Drosophila yakuba GN=GE23392 P... 37 1.1 tr|B3P594|B3P594_DROER GG11940 OS=Drosophila erecta GN=GG11940 P... 35 3.3 tr|B7PKW1|B7PKW1_IXOSC Putative uncharacterized protein (Fragmen... 34 7.4 tr|A6G2S7|A6G2S7_9DELT Putative endonuclease OS=Plesiocystis pac... 34 9.6 tr|Q9VA82|Q9VA82_DROME CG15535 OS=Drosophila melanogaster GN=CG1... 34 9.6 tr|Q4V6S1|Q4V6S1_DROME IP08115p (Fragment) OS=Drosophila melanog... 34 9.6 tr|B4R1L5|B4R1L5_DROSI GD17123 OS=Drosophila simulans GN=GD17123... 34 9.6
>tr|A9RIG4|A9RIG4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_159272 PE=4 SV=1 Length = 219
Score = 68.2 bits (165), Expect = 5e-10 Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 6/77 (7%) Frame = +1
Query: 226 VQHYAKRRSKFAKDPYAWIKVGKD-EECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEA-- 396 V+HYAKR K+ PYA + V + EE P S+PN+GSV+NRN +KRMAQ+A F K +A Sbjct: 78 VRHYAKRAKKWQGAPYAMLPVPPEGEEIPDSRPNQGSVRNRNHQKRMAQRAEFAKMQAHT 137
Query: 397 ---QKRIAQCKAADAKR 438 QKRIA A+R Sbjct: 138 RREQKRIAITARDTARR 154
>tr|B6TLW1|B6TLW1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 187
Score = 65.9 bits (159), Expect = 2e-09 Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Frame = +1
Query: 100 RRLFHAISHQSIGWLATRGTQVPSPVSHLCDPV--SKHPWMLTTVQHYAKRRSKFAKDPY 273 RR I +S A +Q P + L + ++ P + KR S K PY Sbjct: 36 RRFLDPIGLRSFSAAAATASQAPPMGATLFGGLMDTRFPKRRPGFANRRKRASLRPKGPY 95
Query: 274 AWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCKAA 426 W+K DE P SQPN+GSV+ R +KKR+ Q+ FI AE +KR AQ AA Sbjct: 96 YWVKCKPDEPIPVSQPNQGSVRGRKEKKRIKQRKDFIMAEKKKRRAQYSAA 146
>tr|Q75IM4|Q75IM4_ORYSJ Os05g0126200 protein OS=Oryza sativa subsp. japonica GN=P0683F12.6 PE=2 SV=1 Length = 192
Score = 65.1 bits (157), Expect = 4e-09 Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Frame = +1
Query: 103 RLFHAISHQSIGWLATRGTQVPSPVSHLCDPV--SKHPWMLTTVQHYAKRRSKFAKDPYA 276 RL I + A +Q PS + L + ++ P + KR S K PY Sbjct: 42 RLLDPIGLRPFSAAAATASQAPSMGAGLFSGLMDTRFPKRRPGFKSRRKRASLRPKGPYY 101
Query: 277 WIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCKAA 426 W+K E P++QPN+GSV+ R +KKR+ Q+ AFI AE +KR AQ AA Sbjct: 102 WVKCKPGEPIPANQPNEGSVQGRKEKKRIKQRKAFIMAEKKKRKAQYSAA 151
>tr|A2XZX6|A2XZX6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18285 PE=4 SV=1 Length = 192
Score = 65.1 bits (157), Expect = 4e-09 Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Frame = +1
Query: 103 RLFHAISHQSIGWLATRGTQVPSPVSHLCDPV--SKHPWMLTTVQHYAKRRSKFAKDPYA 276 RL I + A +Q PS + L + ++ P + KR S K PY Sbjct: 42 RLLDPIGLRPFSAAAATASQAPSMGAGLFSGLMDTRFPKRRPGFKSRRKRASLRPKGPYY 101
Query: 277 WIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCKAA 426 W+K E P++QPN+GSV+ R +KKR+ Q+ AFI AE +KR AQ AA Sbjct: 102 WVKCKPGEPIPANQPNEGSVQGRKEKKRIKQRKAFIMAEKKKRKAQYSAA 151
>tr|A9NXH5|A9NXH5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 216
Score = 58.2 bits (139), Expect = 5e-07 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 4/70 (5%) Frame = +1
Query: 241 KRRSKFA----KDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRI 408 K+R+K A K P+ WI+ E P S+PN+GSV+ RN +KRM Q++AF EAQKR Sbjct: 110 KKRNKRAYLRPKGPHYWIQYTPGEPIPHSRPNEGSVRGRNHRKRMEQRSAFRSGEAQKRK 169
Query: 409 AQCKAADAKR 438 Q A ++ Sbjct: 170 DQLAGARRRK 179
>tr|A5AL27|A5AL27_VITVI Putative uncharacterized protein (Chromosome chr4 scaffold_83, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00036864001 PE=4 SV=1 Length = 182
Score = 56.6 bits (135), Expect = 1e-06 Identities = 29/66 (43%), Positives = 40/66 (60%) Frame = +1
Query: 241 KRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 420 KR S PYAW++ E ++PN+GSVK R +KKRM + AFI +EA+KR Q + Sbjct: 80 KRASLRPPGPYAWVQYVPGERILPNRPNEGSVKGRKEKKRMRLRRAFILSEAKKRKTQLQ 139
Query: 421 AADAKR 438 A K+ Sbjct: 140 EAKRKK 145
>tr|Q9SD44|Q9SD44_ARATH Putative uncharacterized protein F24M12.50 (At3g51010) OS=Arabidopsis thaliana GN=At3g51010 PE=2 SV=1 Length = 188
Score = 54.7 bits (130), Expect = 5e-06 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Frame = +1
Query: 232 HYAKRRSKFAKD-PYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRI 408 H ++RSK PYA+++ + S+ PN+GSVK RN KKR+ Q+ AFI +E +KR Sbjct: 81 HPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIGQRRAFILSEKKKRQ 140
Query: 409 AQCKAADAKR 438 A + A K+ Sbjct: 141 ALVQEAKRKK 150
>tr|Q8LEP2|Q8LEP2_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 188
Score = 54.7 bits (130), Expect = 5e-06 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Frame = +1
Query: 232 HYAKRRSKFAKD-PYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRI 408 H ++RSK PYA+++ + S+ PN+GSVK RN KKR+ Q+ AFI +E +KR Sbjct: 81 HPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIGQRRAFILSEKKKRQ 140
Query: 409 AQCKAADAKR 438 A + A K+ Sbjct: 141 ALVQEAKRKK 150
>tr|B4PLV9|B4PLV9_DROYA GE23392 OS=Drosophila yakuba GN=GE23392 PE=4 SV=1 Length = 118
Score = 37.0 bits (84), Expect = 1.1 Identities = 21/67 (31%), Positives = 35/67 (52%) Frame = +1
Query: 241 KRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 420 K K A + + K +++ +PNK ++N +K++ AQ+AA + +R AQ K Sbjct: 18 KGPGKVAHNQKPYFKSKNNQKAKGEKPNKPEIRNMKRKEKAAQEAAEREKVRAERDAQVK 77
Query: 421 AADAKRL 441 A KRL Sbjct: 78 AYKKKRL 84
>tr|B3P594|B3P594_DROER GG11940 OS=Drosophila erecta GN=GG11940 PE=4 SV=1 Length = 118
Score = 35.4 bits (80), Expect = 3.3 Identities = 21/67 (31%), Positives = 34/67 (50%) Frame = +1
Query: 241 KRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 420 K K A + + K ++ +PNK ++N +K++ AQ+AA + +R AQ K Sbjct: 18 KGPGKVAHNQKPYFKNKNKQKAKGDKPNKPEIRNLKRKEKAAQEAAQREKVRAERDAQVK 77
Query: 421 AADAKRL 441 A KRL Sbjct: 78 AYKKKRL 84
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