DK960830 [AcEST]

DK960830
Clone id	TST39A01NGRL0008_H11
Library	TST39
Length	581
Definition	Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_H11. 5' end sequence.
Accession	DK960830
Tissue type	prothallia with plantlets
Developmental stage	gametophytes with sporophytes
Contig ID	CL833Contig1
Sequence	CTCGCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTATGTGAGGGAGATGA AAGGTCACGCGCCTTTAACAGACGACACCCATGATAGTGGTGCGTGGGAGAACTCTGGAA GAAGCTCGGCCGGCTGCATGTCATGACGCTGAGGAAGAGAGTGAAGCTGCGTTTGCGCCG CTTGATGTGTGTAGCAGGCGAGTGTCGGGACAGCACGCACTTCATGGATCTCGTGTGGCA AAGGCGTGTGACCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAGCTCAGGA AGCCATCGCCGAGGGAAGCTCTCTTAAGCTAACACGCGCGCGCGCGCGAGCGAGAGAGAG AGAGAGAGAGAGAGGGAGAGAGAGAAACTTTAGAACGACGGCTTTGGCTCCTGCTCCCCA CATTTCGTAAGGTTTTGCAATTATTATCGATGGTGAGCATATGCAGAGATTTAAAGTCAA TTGGACGGCCTTTCAGAGGAGAAAGCAAATGGCTACATTAGATGGAAAACAATTGTAAAA AAGAAATCATGTATCTTAGAAACTGAACCTCACCCTTTATA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q9NPI9
Definition	sp\|Q9NPI9\|IRK16_HUMAN Inward rectifier potassium channel 16 OS=Homo sapiens
Align length	46
Score (bit)	30.0
E-value	8.7
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK960830\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_H11, 5' (581 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q9NPI9\|IRK16_HUMAN Inward rectifier potassium channel 16 OS=H... 30 8.7 >sp\|Q9NPI9\|IRK16_HUMAN Inward rectifier potassium channel 16 OS=Homo sapiens GN=KCNJ16 PE=2 SV=1 Length = 418 Score = 30.0 bits (66), Expect = 8.7 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = -3 Query: 207 RHSPATHIKRRKRSFTLFLSVMTCSRPSFFQSSPTHHYHGCRLLKA 70 R S + K R+RSF+ V +C P +S TH Y KA Sbjct: 360 RESCTSDTKARRRSFSAVAIVSSCENPEETTTSATHEYRETPYQKA 405
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A3KNL7
Definition	tr\|A3KNL7\|A3KNL7_DANRE Ms4a17a.17 protein OS=Danio rerio
Align length	50
Score (bit)	34.7
E-value	4.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK960830\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_H11, 5' (581 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A3KNL7\|A3KNL7_DANRE Ms4a17a.17 protein OS=Danio rerio GN=ms4a... 35 4.0 >tr\|A3KNL7\|A3KNL7_DANRE Ms4a17a.17 protein OS=Danio rerio GN=ms4a17a.17 PE=2 SV=1 Length = 293 Score = 34.7 bits (78), Expect = 4.0 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -2 Query: 247 TPLPHEIHEVRAVPTLACYTHQAAQTQLHSLPQRHDMQPAELLPEFSHAP 98 +P PH +H + H Q SLPQ + PAE L ++S P Sbjct: 218 SPRPHHVHGLNTSGIAVVSNHYVQQPPAESLPQYSEQPPAESLLQYSQQP 267