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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960837
Clone id TST39A01NGRL0008_H19
Library
Length 664
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_H19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTGAGTGAGAGAGAGGAAAGAGAACATAATAAGTCATCACGCTTCTTGTGACCTTACCAC
TCTCTCACACACACACATATTCCCTTCTCAACATCACCTTCTCATCTCATCTCTCTCTGT
GTGTGTATAAATATATGTATATTAATATTCTCCTCTCAAGTAAGTAATCAATCAAAGCGC
GGAAGAGAGCATAATTAAGGGTTTGAGCTGCTAGGAATAATTCAAGCTGGAATCGACTCA
CCAATACTTCCCCAACTCACAGTCACAACTTGTAATTACTTCATGCGATCTAATTCTTAT
GCGAATAGAATGAGCTTCATGTCGTCAAAGATTATATGCCTTGTGCTCATATTGAGTATA
TTTGCATGCATTCTAATGGCAGCTCTCTGAGAGATCTCTTTCTCTCTCACACACACACAC
ACACACAATCGCGTTAATCCTGTATGTTGTGTAATACGGTGTGCGTGTGCATGCATCCAT
GCAGCAGGCCGATGGATACTTATATGCTTCTGCTCATGCACTGACAACTAGTCTCCGATC
ATGATAATATGAAGTTGATGACATGCAGATGAGTTCAACGCAGACATACTTGAACTATAC
GGATCCATTCTTCCTCAGCACACATCAGATCGGTAACTTGCAGGGCACCGGCAAAGTGGT
GGCA
■■Homology search results ■■ -
sp_hit_id P97313
Definition sp|P97313|PRKDC_MOUSE DNA-dependent protein kinase catalytic subunit OS=Mus musculus
Align length 69
Score (bit) 34.3
E-value 0.61
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960837|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_H19, 5'
         (664 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P97313|PRKDC_MOUSE DNA-dependent protein kinase catalytic sub...    34   0.61 
sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic sub...    34   0.61 
sp|Q96N35|TMM83_HUMAN Transmembrane protein 83 OS=Homo sapiens G...    32   3.0  
sp|P60412|KR10B_HUMAN Keratin-associated protein 10-11 OS=Homo s...    32   3.9  
sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis thal...    31   6.7  
sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic sub...    30   8.8  

>sp|P97313|PRKDC_MOUSE DNA-dependent protein kinase catalytic subunit
            OS=Mus musculus GN=Prkdc PE=1 SV=2
          Length = 4128

 Score = 34.3 bits (77), Expect = 0.61
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +1

Query: 124  CINICILIFSSQVSNQSKRGREHN*GFELLGIIQAGIDSPILPQLTVTTCNYFMRSNSYA 303
            C++I   +   + S++    ++++ G +LLGI+ A    P  P   +T+  YF    +  
Sbjct: 2244 CLSIPYRLIFEKFSHKDPNSKDNSVGIQLLGIVIANNLPPYDPNCDITSAMYF---EALV 2300

Query: 304  NRMSFMSSK 330
            N MSF+  K
Sbjct: 2301 NNMSFVKYK 2309


>sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic subunit
            OS=Homo sapiens GN=PRKDC PE=1 SV=3
          Length = 4128

 Score = 34.3 bits (77), Expect = 0.61
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = +1

Query: 124  CINICILIFSSQVSNQSKRGREHN*GFELLGIIQAGIDSPILPQLTVTTCNYFMRSNSYA 303
            C++I   +   + S +    ++++ G +LLGI+ A    P  PQ  + +  YF    +  
Sbjct: 2248 CLSIPYRLIFEKFSGKDPNSKDNSVGIQLLGIVMANDLPPYDPQCGIQSSEYF---QALV 2304

Query: 304  NRMSFMSSK 330
            N MSF+  K
Sbjct: 2305 NNMSFVRYK 2313


>sp|Q96N35|TMM83_HUMAN Transmembrane protein 83 OS=Homo sapiens
           GN=TMEM83 PE=2 SV=1
          Length = 136

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +1

Query: 334 ICLVLILSIFACILMAAL*EIS----FSLTHTHTHNRVN 438
           +C+ L+L I  C+ +     +S    FSLTHTHTH++++
Sbjct: 46  LCVSLLLHISLCVSVYVSLSLSSFPCFSLTHTHTHSQLS 84


>sp|P60412|KR10B_HUMAN Keratin-associated protein 10-11 OS=Homo
           sapiens GN=KRTAP10-11 PE=1 SV=1
          Length = 298

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
 Frame = -2

Query: 642 CKLPI*CVLRKNGSV*FKYVCVELICMSSTSYYHDRRLVVSA*AEAYKYPSACCMDACTR 463
           C +P+ C          K VC    C   +S    +     A   +  Y  ACC+  C +
Sbjct: 146 CCVPVCC----------KPVCCVSTCSEDSSSCCQQSSCQPACCTSSSYQQACCVPVCCK 195

Query: 462 TPYYTTYRINAIVCVCVCER---ERDLSESCH*NAC 364
           T Y        I CV VC R    R    SC    C
Sbjct: 196 TVY-----CKPICCVPVCSRASYSRCQQPSCQPACC 226


>sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis
           thaliana GN=HDA14 PE=2 SV=1
          Length = 423

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 602 DPFFLSTHQIGNLQGTGKV 658
           D FFLSTHQ G+  GTGK+
Sbjct: 255 DIFFLSTHQDGSYPGTGKI 273


>sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic subunit
            OS=Canis familiaris GN=PRKDC PE=2 SV=1
          Length = 4144

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = +1

Query: 124  CINICILIFSSQVSNQSKRGREHN*GFELLGIIQAGIDSPILPQLTVTTCNYFMRSNSYA 303
            C+++   +   + S++    ++++ G +LLGI+ A    P  P+  +    YF    +  
Sbjct: 2260 CLSVPYRLIFEKFSSKDPNSKDNSVGIQLLGIVMANNLPPYDPKCGIERIKYF---EALV 2316

Query: 304  NRMSFMSSK 330
            + MSF+  K
Sbjct: 2317 SNMSFVKYK 2325
tr_hit_id A7STF7
Definition tr|A7STF7|A7STF7_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 70
Score (bit) 35.0
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960837|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_H19, 5'
         (664 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7STF7|A7STF7_NEMVE Predicted protein (Fragment) OS=Nematoste...    35   4.2  
tr|B1MYN9|B1MYN9_LEUCK Putative glycerophosphodiester phosphodie...    34   9.3  
tr|Q2QWU2|Q2QWU2_ORYSJ Os12g0182700 protein OS=Oryza sativa subs...    34   9.3  
tr|B8BNH5|B8BNH5_ORYSI Putative uncharacterized protein OS=Oryza...    34   9.3  
tr|B6THU7|B6THU7_MAIZE Histone deacetylase 10 OS=Zea mays PE=2 SV=1    34   9.3  
tr|A3CFJ9|A3CFJ9_ORYSJ Putative uncharacterized protein OS=Oryza...    34   9.3  

>tr|A7STF7|A7STF7_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g131049 PE=4 SV=1
          Length = 534

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 18/70 (25%), Positives = 42/70 (60%)
 Frame = +1

Query: 205 ELLGIIQAGIDSPILPQLTVTTCNYFMRSNSYANRMSFMSSKIICLVLILSIFACILMAA 384
           ++L  ++   D  ++ Q  V T  + + +N +A R+ F+S  +IC++++L+IF   ++ A
Sbjct: 447 DILKAMKLLFDLTVVNQWHVITQGFVLVTNKWA-RLYFLSFHMICVIVVLNIFVAFILEA 505

Query: 385 L*EISFSLTH 414
              + +S++H
Sbjct: 506 F-MLEYSISH 514


>tr|B1MYN9|B1MYN9_LEUCK Putative glycerophosphodiester
           phosphodiesterase OS=Leuconostoc citreum (strain KM20)
           GN=LCK_00809 PE=4 SV=1
          Length = 616

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = +1

Query: 244 ILPQLTVTTCNYFMRSNSYANRMSFMSSKIICLVLILSIFACILMAAL*EISFSLTHTH 420
           ++  L +  CNY MR   Y N + F+S   I L+LI   FA I +  L  + F  T  H
Sbjct: 44  LIINLILPICNYVMRFILYVNDIPFLSYTNILLILIYQPFAAIEIIFLVIVLFFGTFLH 102


>tr|Q2QWU2|Q2QWU2_ORYSJ Os12g0182700 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0182700 PE=2 SV=1
          Length = 443

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +2

Query: 596 YTDP--FFLSTHQIGNLQGTGKV 658
           Y DP  FFLSTHQ+G+  GTGK+
Sbjct: 271 YEDPDIFFLSTHQLGSYPGTGKI 293


>tr|B8BNH5|B8BNH5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37706 PE=4 SV=1
          Length = 443

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +2

Query: 596 YTDP--FFLSTHQIGNLQGTGKV 658
           Y DP  FFLSTHQ+G+  GTGK+
Sbjct: 271 YDDPDIFFLSTHQLGSYPGTGKI 293


>tr|B6THU7|B6THU7_MAIZE Histone deacetylase 10 OS=Zea mays PE=2 SV=1
          Length = 430

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +2

Query: 596 YTDP--FFLSTHQIGNLQGTGKV 658
           Y DP  FFLSTHQ+G+  GTGK+
Sbjct: 258 YDDPDIFFLSTHQLGSYPGTGKI 280


>tr|A3CFJ9|A3CFJ9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034071 PE=4 SV=1
          Length = 371

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +2

Query: 596 YTDP--FFLSTHQIGNLQGTGKV 658
           Y DP  FFLSTHQ+G+  GTGK+
Sbjct: 199 YEDPDIFFLSTHQLGSYPGTGKI 221