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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960842
Clone id TST39A01NGRL0008_I01
Library
Length 690
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_I01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGCAGACCATTCTTCCCTTTTACCCCTATTAGCTTCAACAGTTTTCCATGACTACAATGA
GAAGGGCTCCCCTTCACAGGCACAGTCGATTTTTCTGTTTTCTCTTCTTAATTCTCTGCA
TACCTGTGATCGAAAAAGACGATGACCTTCCAAAGTACGAAGAAAAGAGGATATTTTTCT
GTAAACAATCGGATTTTGATGGAAATTCAGCACCCCCTTTTATTTTGGAAAGTTTTATTG
CAAAGGATTCGTCATCACTTGTCCAGCCAAATAAGACTCTCAGCAAGACACTTTGGGCTC
TCAAGGTTGACAGAGAAGAATGGCATGGAGAACTGATCAATACATCACACGGTCAATCGA
CTTCGAATACCTTTGTGCCACGTGAAGTGGGTCAAAGGAATTTATTAGAAAACAGTTTAA
AGCCTCTGCAAGCCTTCTCAAATTCTGCAGCTGAAAGGGTAAACAAGAATGGAAAAGGCA
TACTTGTTATGCATTGTAATCCCAGAAATTCAAACACTGACTCAACAGGACACAATCACT
CTATTCAAGGCAGGGTCTCTCAACAGCAAAGTTCCGTCAATATCATAGCAGATGAAGCTC
TACTTGAAAAACTGCAGGTCTTGATTCGACCCACTCCAAATGTCTACCACACCATGGCCT
TTTCACCTACATAATCAATGTTCATGGCCC
■■Homology search results ■■ -
sp_hit_id Q55F68
Definition sp|Q55F68|CYAD_DICDI Adenylate cyclase, terminal-differentiation specific OS=Dictyostelium discoideum
Align length 130
Score (bit) 33.9
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960842|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_I01, 5'
         (690 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q55F68|CYAD_DICDI Adenylate cyclase, terminal-differentiation...    34   0.84 
sp|Q559T8|Y0701_DICDI Probable serine/threonine-protein kinase D...    33   1.1  
sp|Q08379|GOGA2_HUMAN Golgin subfamily A member 2 OS=Homo sapien...    33   1.9  
sp|Q54XS3|GDT1_DICDI Probable inactive serine/threonine-protein ...    33   1.9  
sp|Q54XG7|DIMA_DICDI Basic-leucine zipper transcription factor A...    33   1.9  
sp|P18013|IPAD_SHIFL Invasin ipaD OS=Shigella flexneri GN=ipaD P...    32   3.2  
sp|Q558U1|IFKA_DICDI Probable serine/threonine-protein kinase if...    30   9.3  

>sp|Q55F68|CYAD_DICDI Adenylate cyclase, terminal-differentiation
            specific OS=Dictyostelium discoideum GN=acrA PE=1 SV=1
          Length = 2123

 Score = 33.9 bits (76), Expect = 0.84
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
 Frame = +3

Query: 186  QSDFDGNSAPPFILESF-----IAKDSSSLVQPNKTLSKTLWALKVDREEWHG----ELI 338
            +SD    S    ++ESF        D ++L+  +K     L  + ++ +   G    ++I
Sbjct: 1130 ESDKSTQSKIQKVIESFGYFSTFVTDGTALISLSKKNYYDLVIVDLELQSTDGFECAQII 1189

Query: 339  NTSHGQSTSNT-FVPREVGQRNLLENSLKPLQAFSNSAAERVNKNGKGILVMHCNPRNSN 515
              +HG+  SNT FVP+ +   +  +N+       +N+  +  N N       + N  N+N
Sbjct: 1190 RDTHGEIFSNTIFVPKPISTNSNDDNNNNNNNNNNNNNNDNNNNNNNNNNNNNNNNNNNN 1249

Query: 516  TDSTGHNHSI 545
             ++  +N+SI
Sbjct: 1250 NNNNNNNNSI 1259


>sp|Q559T8|Y0701_DICDI Probable serine/threonine-protein kinase
            DDB_G0272282 OS=Dictyostelium discoideum GN=DDB_G0272282
            PE=3 SV=1
          Length = 2102

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 351  GQSTSNTFVPREVGQRNLLENSLKPLQAFSNSAAERVNKNGKGILVMHCNPRNSNTDSTG 530
            GQ+ +N+    E    N   NS    Q  +NS +   N NG G L   CN  N N ++  
Sbjct: 1926 GQNNNNS----ESNNNNNNSNSNVSGQNINNSVSSSSNNNGSGNLNNICNNSNVNANNNN 1981

Query: 531  HNHSIQGRVSQQQSSVN 581
             N ++    + + +++N
Sbjct: 1982 SNGNLGNNNNNKNNNIN 1998


>sp|Q08379|GOGA2_HUMAN Golgin subfamily A member 2 OS=Homo sapiens
            GN=GOLGA2 PE=1 SV=2
          Length = 990

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
 Frame = +3

Query: 231  SFIAKDSSSLVQPNKTLSKTLWALKVDREEWHGELINTSHG---QSTSNTFVPREVGQRN 401
            S +A+D   +      L + +  L  DR EWHG  +  +     + TS    P+E+G  N
Sbjct: 857  SRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGRFLAAAQNPADEPTSGAPAPQELGAAN 916

Query: 402  --------LLENSLKPLQAFSNSAAERVNKNGKGIL 485
                     L  S++P Q  +   + R N   + I+
Sbjct: 917  QQGDLCEVSLAGSVEPAQGEAREGSPRDNPTAQQIM 952


>sp|Q54XS3|GDT1_DICDI Probable inactive serine/threonine-protein
            kinase gdt1 OS=Dictyostelium discoideum GN=gdt1 PE=1 SV=1
          Length = 1661

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
 Frame = +3

Query: 225  LESFIAKDSSSL--VQPNKTLSKTLWALKVDREEWHGELINTSHGQSTSNTFVPREVGQR 398
            L  F++K +  +   Q N+   K L  +          +++T    S  N  +P+   + 
Sbjct: 1034 LSQFLSKSNKDIEYAQNNEIEIKVLPKITSHSSYPSISILDTISSDSIFNNQIPKNNNRY 1093

Query: 399  NLLENSLKPLQAFSNSAAERV--NKNGKGILVMHCNPRNSNTDS---TGHNHSIQGRVSQ 563
                 SL     F+N+       N N   I+  +CN   SN++S     +N+S     S 
Sbjct: 1094 KFKNQSLNNNNYFNNNNNNNNSNNNNSNNIIYSNCNSNYSNSNSNNNNNNNNSNSNNNSN 1153

Query: 564  QQSSVNI 584
              S++NI
Sbjct: 1154 SNSNINI 1160


>sp|Q54XG7|DIMA_DICDI Basic-leucine zipper transcription factor A
           OS=Dictyostelium discoideum GN=dimA PE=2 SV=2
          Length = 1230

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 22/105 (20%), Positives = 46/105 (43%)
 Frame = +3

Query: 324 HGELINTSHGQSTSNTFVPREVGQRNLLENSLKPLQAFSNSAAERVNKNGKGILVMHCNP 503
           +G    T +  ++++ F+ + +G  +    SL+P    SNS+    N N         N 
Sbjct: 30  NGSSNGTMNLSNSASLFLNKNLGNSDFQPFSLQPSLYLSNSSNNTNNNNNN-------NN 82

Query: 504 RNSNTDSTGHNHSIQGRVSQQQSSVNIIADEALLEKLQVLIRPTP 638
            N+N ++  +N++     +   + +N   DE + +K+      TP
Sbjct: 83  NNNNNNNNNNNNNNNNNNNNNNNIINNNTDEFVFKKISANNLQTP 127


>sp|P18013|IPAD_SHIFL Invasin ipaD OS=Shigella flexneri GN=ipaD PE=1
           SV=1
          Length = 332

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = +3

Query: 333 LINTSHGQSTSNTFVPREVGQRNLLENSLKPLQAFSNSAAERVNKNGKGILVMHCNPRNS 512
           L +T H   T+N  + +E+ Q+ L + SL+ +   S+  +  VNK+ + + ++  N    
Sbjct: 47  LNDTLHNIRTTNQALKKELSQKTLTKTSLEEIALHSSQISMDVNKSAQLLDILSRNEYPI 106

Query: 513 NTDSTGHNHS 542
           N D+    HS
Sbjct: 107 NKDARELLHS 116


>sp|Q558U1|IFKA_DICDI Probable serine/threonine-protein kinase ifkA
            OS=Dictyostelium discoideum GN=ifkA PE=2 SV=1
          Length = 2258

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 35/124 (28%), Positives = 52/124 (41%)
 Frame = +3

Query: 201  GNSAPPFILESFIAKDSSSLVQPNKTLSKTLWALKVDREEWHGELINTSHGQSTSNTFVP 380
            GNS     L S     SSSL+  NK  SK L   K           NTS   STSNT   
Sbjct: 1046 GNSNKKLTLSSSNTSSSSSLLSNNK--SKILNTSK-------STSTNTSTSTSTSNTNKN 1096

Query: 381  REVGQRNLLENSLKPLQAFSNSAAERVNKNGKGILVMHCNPRNSNTDSTGHNHSIQGRVS 560
            +++ ++   ++ L PL    N    + NKN       +     S++DS    + ++ R+ 
Sbjct: 1097 KKISKKK--KSKLSPLMKPKN----KKNKN-------NGESEQSSSDSENGENGMKSRII 1143

Query: 561  QQQS 572
            +  S
Sbjct: 1144 ENAS 1147
tr_hit_id B1YEJ0
Definition tr|B1YEJ0|B1YEJ0_EXIS2 Alkaline phosphatase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)
Align length 117
Score (bit) 38.9
E-value 0.31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960842|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_I01, 5'
         (690 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1YEJ0|B1YEJ0_EXIS2 Alkaline phosphatase OS=Exiguobacterium s...    39   0.31 
tr|B0CFV6|B0CFV6_ACAM1 Methyltransferase, FkbM family OS=Acaryoc...    37   1.2  
tr|Q4JCJ0|Q4JCJ0_SULAC Conserved protein OS=Sulfolobus acidocald...    36   2.0  
tr|A7JSB4|A7JSB4_PASHA Heme-hemopexin utilization protein A OS=M...    31   2.4  
tr|A7TZ22|A7TZ22_9MAXI Collagen alpha-1 chain OS=Lepeophtheirus ...    35   5.8  
tr|B4K5N4|B4K5N4_DROMO GI24071 OS=Drosophila mojavensis GN=GI240...    34   7.6  
tr|B1H104|B1H104_XENTR Rreb1 protein (Fragment) OS=Xenopus tropi...    34   10.0 
tr|Q1Z6F5|Q1Z6F5_PHOPR Putative histidinol phosphate aminotransf...    34   10.0 

>tr|B1YEJ0|B1YEJ0_EXIS2 Alkaline phosphatase OS=Exiguobacterium
           sibiricum (strain DSM 17290 / JCM 13490 / 255-15)
           GN=Exig_2710 PE=3 SV=1
          Length = 452

 Score = 38.9 bits (89), Expect = 0.31
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
 Frame = +3

Query: 225 LESFIAKDSSSLVQPNKTLSKTLWALKVDREEWHGEL--INTSHGQSTSNTFVPREVGQR 398
           ++  +    S+ V+P+  L+K+    K D   +   L  + T   +     F    + +R
Sbjct: 181 IDVLLGGGKSNFVRPDVDLTKSF---KKDGYSYVTNLDQLQTDQNKQVLGLFADGGLPKR 237

Query: 399 NLLENSLKPLQAFSNSAAERVNKNGKGILVMHCNPRNSNTDSTGHNHSIQGRVSQQQ 569
              EN++  L+  +NSA +R++ N KG  +M      S  D  GH++ I G +S+ +
Sbjct: 238 IDRENTVPSLEKMTNSAIKRLDSNKKGFFLM---VEGSQIDWAGHDNDIVGAMSEME 291


>tr|B0CFV6|B0CFV6_ACAM1 Methyltransferase, FkbM family
           OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_3264
           PE=4 SV=1
          Length = 274

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = +3

Query: 495 CNPRNSNTDSTGHNHSIQGRVSQQQSSVNIIADEALLEKLQVLIRPTPNV 644
           C+P  +  D   H  SI   V +  S+VNIIA EA+ EK + L R  P V
Sbjct: 53  CDPNKTFLDIGAHIGSITSAVQRYDSTVNIIAVEAIPEKAEQLRRKFPKV 102


>tr|Q4JCJ0|Q4JCJ0_SULAC Conserved protein OS=Sulfolobus
           acidocaldarius GN=Saci_0060 PE=4 SV=1
          Length = 271

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 22/59 (37%), Positives = 36/59 (61%)
 Frame = +3

Query: 195 FDGNSAPPFILESFIAKDSSSLVQPNKTLSKTLWALKVDREEWHGELINTSHGQSTSNT 371
           +DGN+    +LE F    + SLV+  ++LSK L A++V +E+ + E+IN S   S  +T
Sbjct: 116 YDGNAVSHLVLEKFSELVTDSLVEKIESLSKVLKAIRVPKEKLN-EIINYSPDISDIST 173


>tr|A7JSB4|A7JSB4_PASHA Heme-hemopexin utilization protein A
           OS=Mannheimia haemolytica PHL213 GN=hxuA PE=4 SV=1
          Length = 938

 Score = 30.8 bits (68), Expect(2) = 2.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 399 NLLENSLKPLQAFSNSAAERVNKNGKGILVMHCNPRNSNTDSTGHNH-SIQGRVSQQQSS 575
           N+  + +     F +  AE++N +   I +   N  NS  +ST  N   + G+VS + S 
Sbjct: 634 NIANSDISLDNGFVHLMAEKINLDDSKINITF-NQDNSLDESTQINRLGLNGKVSMKNSH 692

Query: 576 VNIIADE 596
           +N++ DE
Sbjct: 693 INVVGDE 699



 Score = 23.5 bits (49), Expect(2) = 2.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 311 QRRMAWRTDQYITRSIDFEY 370
           QRR  W +D Y    +++EY
Sbjct: 592 QRRKRWNSDNYDETDLNWEY 611


>tr|A7TZ22|A7TZ22_9MAXI Collagen alpha-1 chain OS=Lepeophtheirus
           salmonis PE=2 SV=1
          Length = 219

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
 Frame = +3

Query: 198 DGNSAPP--FILESFIAKDSSSLVQPNKTLSKTLWALKVDREEWHGELINTSHGQSTSNT 371
           D NS  P   IL     + SSS + P   +S+ +W +  +RE W  E+     G +    
Sbjct: 61  DPNSGDPKDSILVHCDMETSSSCIYPKPEMSEEMWHITTERETWFSEIPKLGFGLTYKAD 120

Query: 372 FVPREVGQRNLLENSLKPLQAFSNSAAERVNKNGKGILVMHCNPRNS 512
                        N L  LQ  S+SA + V  +    +  + + RN+
Sbjct: 121 ------------SNQLNFLQMLSSSAVQNVTYHCSNSVAYYNDKRNN 155


>tr|B4K5N4|B4K5N4_DROMO GI24071 OS=Drosophila mojavensis GN=GI24071
           PE=4 SV=1
          Length = 1595

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
 Frame = +3

Query: 357 STSNTFVPREVGQRNLLENSLKPLQAFSNSAAE-RVNK-----NGKGILVMHCNPRNSNT 518
           +T+ T VP+   Q  LL N L PL   S+S     VN+     NG  +L +     N+ T
Sbjct: 108 TTTTTEVPK---QTTLLTNELGPLPVNSSSTGSLAVNQQQSVTNGNVLLTL-AEKENAGT 163

Query: 519 DSTGHNHSIQGRVS---QQQSSVNIIADEALLEKLQVLIRPTPNV 644
                  S Q  V+   QQQSS+NI  +    ++L V    TP V
Sbjct: 164 VKQSEQQSEQQPVNSGMQQQSSINITTESVAKQQLNVTTE-TPTV 207


>tr|B1H104|B1H104_XENTR Rreb1 protein (Fragment) OS=Xenopus
           tropicalis GN=rreb1 PE=2 SV=1
          Length = 798

 Score = 33.9 bits (76), Expect = 10.0
 Identities = 31/110 (28%), Positives = 51/110 (46%)
 Frame = +3

Query: 252 SSLVQPNKTLSKTLWALKVDREEWHGELINTSHGQSTSNTFVPREVGQRNLLENSLKPLQ 431
           S L   N  +S  + A  +   E  G L NT   +S + +  P  +G+RN  + S +   
Sbjct: 35  SDLSSVNAMMSTVMSATSI--AENGGSLQNT---KSPAKSPAPNRIGRRN--QESKEEKS 87

Query: 432 AFSNSAAERVNKNGKGILVMHCNPRNSNTDSTGHNHSIQGRVSQQQSSVN 581
           ++     E+V  N +  L MH    N++T  T H+ SI G+     SS++
Sbjct: 88  SYICPLCEKVC-NSQHQLTMHIRQHNTDTGGTDHSCSICGKSLSSASSLD 136


>tr|Q1Z6F5|Q1Z6F5_PHOPR Putative histidinol phosphate
           aminotransferase OS=Photobacterium profundum 3TCK
           GN=P3TCK_10933 PE=3 SV=1
          Length = 362

 Score = 33.9 bits (76), Expect = 10.0
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 483 LVMHCNPRNSNTDSTGHNHSIQGRVSQQQSSVNIIADEALLEKLQVLIRPTPNVYHTMAF 662
           L+  C+P N  T +T H+H I   +   ++S  ++ DEA +E       P  +V H MA 
Sbjct: 156 LLFLCSPNNP-TSNTIHHHDIMELLEASKASTLVVVDEAYIE-----FAPETSVLHLMAQ 209

Query: 663 SP 668
            P
Sbjct: 210 YP 211