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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960844
Clone id TST39A01NGRL0008_I03
Library
Length 416
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_I03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTCTCCCTCTGGATCATCTTCTTTTCCCACGGGACAGATAAAGCTTGGTTGCCCAGACCG
TCGGGACGCCCTGGCTGCATCTACCGCATCCTCCCTCGAGGCCGCCTGTGTCTCCTCCCT
CTCTGCCCGCTACTCCTCCTCCCCCGCCCCTTATCCTATCTGATGCTCCCCTCCATTCTC
CCAATTCTCGGGTCGCACGCTAGCCTCCTCCCTGCTTCCATCCCCCTCACCTGAAAAAAT
AACAAGATAAGCAGTGGCTGCGAGAATGTGCATCTGGTACTTGCCCCGGCGTCCGTGGAG
GCTCCCCCCACACACCGATGTCTCGTCTGGTGGAGAACCATATCCATACTATCCAATTCT
TGTCCCTTGATGCCTTTGACAAGGCTAACTCGGGACACCCTCGTCTTCCCATGGGG
■■Homology search results ■■ -
sp_hit_id O20250
Definition sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia oleracea
Align length 35
Score (bit) 49.3
E-value 6.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960844|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_I03, 5'
         (416 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia ol...    49   6e-06
sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tub...    46   5e-05
sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE...    46   7e-05
sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagine...    42   0.001
sp|Q8CPC7|TKT_STAES Transketolase OS=Staphylococcus epidermidis ...    40   0.003
sp|Q5HPJ9|TKT_STAEQ Transketolase OS=Staphylococcus epidermidis ...    40   0.003
sp|P45694|TKT_BACSU Transketolase OS=Bacillus subtilis GN=tkt PE...    40   0.003
sp|P56900|TKT_SINMW Transketolase OS=Sinorhizobium medicae (stra...    40   0.004
sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans GN=tkt ...    40   0.005
sp|Q8YRU9|TKT_ANASP Transketolase OS=Anabaena sp. (strain PCC 71...    40   0.005
sp|P58333|TKT_RHIME Transketolase OS=Rhizobium meliloti GN=cbbT ...    39   0.006
sp|Q42675|TKTA_CRAPL Transketolase 10 OS=Craterostigma plantagin...    38   0.014
sp|P66963|TKT_STAAW Transketolase OS=Staphylococcus aureus (stra...    38   0.018
sp|Q6G9L6|TKT_STAAS Transketolase OS=Staphylococcus aureus (stra...    38   0.018
sp|Q6GH64|TKT_STAAR Transketolase OS=Staphylococcus aureus (stra...    38   0.018
sp|P99161|TKT_STAAN Transketolase OS=Staphylococcus aureus (stra...    38   0.018
sp|P66962|TKT_STAAM Transketolase OS=Staphylococcus aureus (stra...    38   0.018
sp|Q5HG77|TKT_STAAC Transketolase OS=Staphylococcus aureus (stra...    38   0.018
sp|Q8NZX4|TKT_STRP8 Transketolase OS=Streptococcus pyogenes sero...    37   0.024
sp|Q5XAK5|TKT_STRP6 Transketolase OS=Streptococcus pyogenes sero...    37   0.024
sp|P51010|TKT_XANFL Transketolase OS=Xanthobacter flavus GN=cbbT...    37   0.031
sp|O67642|TKT_AQUAE Transketolase OS=Aquifex aeolicus GN=tkt PE=...    36   0.053
sp|P22976|TKT_STRPN Probable transketolase OS=Streptococcus pneu...    35   0.090
sp|P57958|TKT2_PASMU Transketolase 2 OS=Pasteurella multocida GN...    35   0.090
sp|P57927|TKT1_PASMU Transketolase 1 OS=Pasteurella multocida GN...    35   0.090
sp|P34736|TKT_PICST Transketolase OS=Pichia stipitis GN=TKT PE=3...    35   0.15 
sp|P33570|TKT2_ECOLI Transketolase 2 OS=Escherichia coli (strain...    35   0.15 
sp|O94039|TKT1_CANAL Transketolase 1 OS=Candida albicans GN=TKT1...    35   0.15 
sp|O83571|TKT_TREPA Transketolase OS=Treponema pallidum GN=tkt P...    34   0.20 
sp|P23254|TKT1_YEAST Transketolase 1 OS=Saccharomyces cerevisiae...    33   0.34 

>sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia
           oleracea PE=1 SV=1
          Length = 741

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +3

Query: 312 TPMSRLVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           T + +LVE  ++TI+FL++DA +KANSGHP LPMG
Sbjct: 75  TDIDQLVEKSVNTIRFLAIDAVEKANSGHPGLPMG 109


>sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum
           tuberosum PE=2 SV=1
          Length = 741

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 19/30 (63%), Positives = 26/30 (86%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           +VE  ++TI+FL++DA +KANSGHP LPMG
Sbjct: 80  IVEKSVNTIRFLAIDAVEKANSGHPGLPMG 109


>sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE=1
           SV=1
          Length = 675

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 19/30 (63%), Positives = 26/30 (86%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           L+E  ++TI+FL++DA +KANSGHP LPMG
Sbjct: 15  LLEKSVNTIRFLAIDAVEKANSGHPGLPMG 44


>sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagineum
           GN=TKT7 PE=2 SV=1
          Length = 676

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 17/30 (56%), Positives = 24/30 (80%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           LV   ++TI+FL++DA +KA SGHP +PMG
Sbjct: 13  LVSKSVNTIRFLAIDAVEKAKSGHPGMPMG 42


>sp|Q8CPC7|TKT_STAES Transketolase OS=Staphylococcus epidermidis
           (strain ATCC 12228) GN=tkt PE=3 SV=1
          Length = 662

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +3

Query: 342 IHTIQFLSLDAFDKANSGHPRLPMG 416
           I TI+ LS+DA +KANSGHP LPMG
Sbjct: 10  IDTIRALSIDAIEKANSGHPGLPMG 34


>sp|Q5HPJ9|TKT_STAEQ Transketolase OS=Staphylococcus epidermidis
           (strain ATCC 35984 / RP62A) GN=tkt PE=3 SV=1
          Length = 662

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +3

Query: 342 IHTIQFLSLDAFDKANSGHPRLPMG 416
           I TI+ LS+DA +KANSGHP LPMG
Sbjct: 10  IDTIRALSIDAIEKANSGHPGLPMG 34


>sp|P45694|TKT_BACSU Transketolase OS=Bacillus subtilis GN=tkt PE=3
           SV=2
          Length = 667

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +3

Query: 318 MSRLVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           M  + +  + TI+ LS+DA +KANSGHP +PMG
Sbjct: 1   MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMG 33


>sp|P56900|TKT_SINMW Transketolase OS=Sinorhizobium medicae (strain
           WSM419) GN=cbbT PE=3 SV=2
          Length = 695

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +3

Query: 336 NHIHTIQFLSLDAFDKANSGHPRLPMG 416
           N    I+FLS+DA +KANSGHP +PMG
Sbjct: 17  NMADAIRFLSMDAVEKANSGHPGMPMG 43


>sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans GN=tkt
           PE=3 SV=1
          Length = 666

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 19/34 (55%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
 Frame = +3

Query: 318 MSRLVEN-HIHTIQFLSLDAFDKANSGHPRLPMG 416
           MS+ VE   ++TI+ LS+D+ +KANSGHP +PMG
Sbjct: 1   MSKHVEQLAVNTIRTLSIDSVEKANSGHPGMPMG 34


>sp|Q8YRU9|TKT_ANASP Transketolase OS=Anabaena sp. (strain PCC 7120)
           GN=tkt PE=1 SV=1
          Length = 670

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           L E  I+ I+FL++DA +KA SGHP LPMG
Sbjct: 8   LEELSINAIRFLAVDAIEKAKSGHPGLPMG 37
tr_hit_id A5AS94
Definition tr|A5AS94|A5AS94_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 30
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960844|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_I03, 5'
         (416 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AS94|A5AS94_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A9PHE2|A9PHE2_POPTR Putative uncharacterized protein OS=Popul...    48   3e-04
tr|A9P7Z7|A9P7Z7_POPTR Putative uncharacterized protein OS=Popul...    48   3e-04
tr|O78327|O78327_CAPAN Transketolase 1 OS=Capsicum annuum PE=2 SV=1    47   5e-04
tr|A9SUL8|A9SUL8_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|A9SUJ9|A9SUJ9_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|Q84ZY2|Q84ZY2_ORYSJ Putative transketolase OS=Oryza sativa su...    46   0.001
tr|Q0DEU8|Q0DEU8_ORYSJ Os06g0133800 protein (Fragment) OS=Oryza ...    46   0.001
tr|A5C1C5|A5C1C5_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q92EU8|Q92EU8_LISIN Lin0360 protein OS=Listeria innocua GN=li...    44   0.004
tr|Q8YA23|Q8YA23_LISMO Lmo0342 protein OS=Listeria monocytogenes...    44   0.004
tr|Q723W3|Q723W3_LISMF Transketolase OS=Listeria monocytogenes s...    44   0.004
tr|A0AFD4|A0AFD4_LISW6 Complete genome OS=Listeria welshimeri se...    44   0.004
tr|Q4EQB2|Q4EQB2_LISMO Transketolase OS=Listeria monocytogenes s...    44   0.004
tr|B8DEQ8|B8DEQ8_LISMO Transketolase OS=Listeria monocytogenes H...    44   0.004
tr|Q7NI86|Q7NI86_GLOVI Transketolase OS=Gloeobacter violaceus GN...    43   0.009
tr|Q9LZY8|Q9LZY8_ARATH Transketolase-like protein OS=Arabidopsis...    43   0.009
tr|Q944P9|Q944P9_ARATH AT3g60750/T4C21_160 OS=Arabidopsis thalia...    43   0.009
tr|Q8RWV0|Q8RWV0_ARATH Putative transketolase OS=Arabidopsis tha...    43   0.009
tr|Q8LE99|Q8LE99_ARATH Transketolase-like protein OS=Arabidopsis...    43   0.009
tr|Q84WI5|Q84WI5_ARATH Putative uncharacterized protein OS=Arabi...    43   0.009
tr|A8VVM5|A8VVM5_9BACI Resolvase, N-terminal domain OS=Bacillus ...    42   0.012
tr|Q7XWP9|Q7XWP9_ORYSJ Os04g0266900 protein OS=Oryza sativa subs...    42   0.012
tr|Q01LW1|Q01LW1_ORYSA OSIGBa0139I12.3 protein OS=Oryza sativa G...    42   0.012
tr|A4S0R4|A4S0R4_OSTLU Predicted protein OS=Ostreococcus lucimar...    42   0.012
tr|A3ARR7|A3ARR7_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.012
tr|A2XR63|A2XR63_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.012
tr|Q2JSA9|Q2JSA9_SYNJA Transketolase OS=Synechococcus sp. (strai...    42   0.020
tr|Q2JME5|Q2JME5_SYNJB Transketolase OS=Synechococcus sp. (strai...    42   0.020
tr|B7DRJ0|B7DRJ0_9BACL Transketolase OS=Alicyclobacillus acidoca...    42   0.020

>tr|A5AS94|A5AS94_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005988 PE=4 SV=1
          Length = 680

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           LVE  I+TI+FLS+DA +KANSGHP LPMG
Sbjct: 68  LVEKSINTIRFLSIDAVEKANSGHPGLPMG 97


>tr|A9PHE2|A9PHE2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 744

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +3

Query: 312 TPMSRLVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           T  + LVE  ++TI+FL++DA +KANSGHP LPMG
Sbjct: 78  TTETSLVEKSVNTIRFLAIDAVEKANSGHPGLPMG 112


>tr|A9P7Z7|A9P7Z7_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 744

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +3

Query: 312 TPMSRLVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           T  + LVE  ++TI+FL++DA +KANSGHP LPMG
Sbjct: 78  TTETSLVEKSVNTIRFLAIDAVEKANSGHPGLPMG 112


>tr|O78327|O78327_CAPAN Transketolase 1 OS=Capsicum annuum PE=2 SV=1
          Length = 744

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           LVE  ++TI+FL++DA +KANSGHP LPMG
Sbjct: 83  LVEKSVNTIRFLAIDAVEKANSGHPGLPMG 112


>tr|A9SUL8|A9SUL8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_107024 PE=4 SV=1
          Length = 715

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           LVE  ++TI+FL++DA +KANSGHP LPMG
Sbjct: 53  LVEKSVNTIRFLAIDAVEKANSGHPGLPMG 82


>tr|A9SUJ9|A9SUJ9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84171 PE=4 SV=1
          Length = 692

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           LVE  ++TI+FL++DA +KANSGHP LPMG
Sbjct: 30  LVEKSVNTIRFLAIDAVEKANSGHPGLPMG 59


>tr|Q84ZY2|Q84ZY2_ORYSJ Putative transketolase OS=Oryza sativa
           subsp. japonica GN=134P10.11 PE=4 SV=1
          Length = 743

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 19/30 (63%), Positives = 26/30 (86%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           L+E  ++TI+FL++DA +KANSGHP LPMG
Sbjct: 83  LLEKSVNTIRFLAIDAVEKANSGHPGLPMG 112


>tr|Q0DEU8|Q0DEU8_ORYSJ Os06g0133800 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os06g0133800 PE=4 SV=1
          Length = 678

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 19/30 (63%), Positives = 26/30 (86%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           L+E  ++TI+FL++DA +KANSGHP LPMG
Sbjct: 18  LLEKSVNTIRFLAIDAVEKANSGHPGLPMG 47


>tr|A5C1C5|A5C1C5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026323 PE=4 SV=1
          Length = 745

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 18/30 (60%), Positives = 26/30 (86%)
 Frame = +3

Query: 327 LVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           L+E  ++TI+FL++D+ +KANSGHP LPMG
Sbjct: 84  LIEKSVNTIRFLAVDSVEKANSGHPGLPMG 113


>tr|Q92EU8|Q92EU8_LISIN Lin0360 protein OS=Listeria innocua
           GN=lin0360 PE=4 SV=1
          Length = 665

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +3

Query: 318 MSRLVENHIHTIQFLSLDAFDKANSGHPRLPMG 416
           MSR+ E  +++I+ LS+D  +KANSGHP LPMG
Sbjct: 1   MSRIDEQMVNSIRVLSMDMIEKANSGHPGLPMG 33