DK960847 |
Clone id |
TST39A01NGRL0008_I06 |
Library |
TST39 |
Length |
641 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_I06. 5' end sequence. |
Accession |
DK960847 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GCGAAAACGTTTTCGCGGCTGTTTATTGGCTAAAGCCTTTTCGTGCAAGGCATGGGAGAG TCCGCGACCGAGACACCTTCACCTGGGGCGCCTCTGGCTTCAGCAGCAGCTACTGCGGAT GGGCAATCTGTTAGTAAAAATGCTTTGAAGAAGGCGTTGAAGCAGCAGCACAAGGAGGAA GAGAGGAGGCTGAAGGAAGAGGAAAAAAGGAAGAAGGCAGCTACAGAAGGAGAAGCTGTT ACGAGAACTCGGAGTCCTGATGAGGATGATGACGAGGCCGATCCTAGACTTTATTATGAG AACAGGTTGAAGGTTTTAGGAGCTATTAAAGCCACTGGGGAAAACCCTTACCCTCACAAG TTTGCTGTGTCCATTAGTGTTCCCGACTATGTGAAGCAATTTTCGGGTCTTTCAGATGGG GAGCACAAACCAGAATGGACTGTATCTGTGGCTGGAAGAATTTTTAACAAAAGGAGCTCA TCGGTTAAGCTATTATTTTATGATCTCATTGGAGAGGGTATGAAGGTTCAAGTAATGGCA GATGCAAAAAACTCTGGTCTTCGCGAGCCTGAGTTTGCGAAGCTTCATGCAAGCATCAAG CGCGGTGATATCGTAGGAGTCCAAGGATTTCCAGGCAAAAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ZPI1 |
Definition |
sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase OS=Arabidopsis thaliana |
Align length |
125 |
Score (bit) |
162.0 |
E-value |
2.0e-39 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960847|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_I06, 5' (641 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase OS=Arabidopsis thalian... 162 2e-39 sp|Q6F2U9|SYK_ORYSJ Lysyl-tRNA synthetase OS=Oryza sativa subsp.... 149 9e-36 sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase OS=Homo sapiens GN=KAR... 127 5e-29 sp|Q43776|SYK_SOLLC Lysyl-tRNA synthetase OS=Solanum lycopersicu... 126 8e-29 sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase OS=Cricetulus griseus ... 125 1e-28 sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase OS=Mus musculus GN=Kar... 125 2e-28 sp|Q9UUE6|SYKC_SCHPO Lysyl-tRNA synthetase, cytoplasmic OS=Schiz... 119 1e-26 sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase OS=Caenorhabditis eleg... 108 3e-23 sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic OS=Sacch... 104 4e-22 sp|Q4JCI5|SYK_SULAC Lysyl-tRNA synthetase OS=Sulfolobus acidocal... 60 7e-09 sp|Q9X231|SYK_THEMA Lysyl-tRNA synthetase OS=Thermotoga maritima... 58 4e-08 sp|A6LMS4|SYK_THEM4 Lysyl-tRNA synthetase OS=Thermosipho melanes... 57 6e-08 sp|Q8PVP6|SYK2_METMA Lysyl-tRNA synthetase 2 OS=Methanosarcina m... 57 6e-08 sp|P95970|SYK_SULSO Lysyl-tRNA synthetase OS=Sulfolobus solfatar... 57 1e-07 sp|Q8TSN5|SYK2_METAC Lysyl-tRNA synthetase 2 OS=Methanosarcina a... 56 1e-07 sp|A5ILE6|SYK_THEP1 Lysyl-tRNA synthetase OS=Thermotoga petrophi... 56 2e-07 sp|A8F4K1|SYK_THELT Lysyl-tRNA synthetase OS=Thermotoga lettinga... 50 8e-06 sp|A7HM68|SYK_FERNB Lysyl-tRNA synthetase OS=Fervidobacterium no... 50 8e-06 sp|Q7U3A4|SYK_PROMM Lysyl-tRNA synthetase OS=Prochlorococcus mar... 50 1e-05 sp|Q0IDW9|SYK_SYNS3 Lysyl-tRNA synthetase OS=Synechococcus sp. (... 50 1e-05 sp|A5GI38|SYK_SYNPW Lysyl-tRNA synthetase OS=Synechococcus sp. (... 46 1e-04 sp|A8FKI8|SYK_CAMJ8 Lysyl-tRNA synthetase OS=Campylobacter jejun... 45 2e-04 sp|A7I3S8|SYK_CAMHC Lysyl-tRNA synthetase OS=Campylobacter homin... 45 2e-04 sp|P73443|SYK_SYNY3 Lysyl-tRNA synthetase OS=Synechocystis sp. (... 45 4e-04 sp|A7H4X7|SYK_CAMJD Lysyl-tRNA synthetase OS=Campylobacter jejun... 44 5e-04 sp|Q255U2|SYK_CHLFF Lysyl-tRNA synthetase OS=Chlamydophila felis... 44 0.001 sp|Q5HW66|SYK_CAMJR Lysyl-tRNA synthetase OS=Campylobacter jejun... 44 0.001 sp|A1VYC1|SYK_CAMJJ Lysyl-tRNA synthetase OS=Campylobacter jejun... 44 0.001 sp|P41258|SYK_CAMJE Lysyl-tRNA synthetase OS=Campylobacter jejun... 44 0.001 sp|Q1QAW5|SYK_PSYCK Lysyl-tRNA synthetase OS=Psychrobacter cryoh... 43 0.001
>sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1 Length = 626
Score = 162 bits (409), Expect = 2e-39 Identities = 80/125 (64%), Positives = 94/125 (75%) Frame = +1
Query: 265 DDDEADPRLYYENRLKVLGAIKATGENPYPHKFAVSISVPDYVKQFSGLSDGEHKPEWTV 444 DD+E D YYENRLK L A KA GENPYPHKFAVS+S+P Y++ + L++G+H Sbjct: 81 DDEEMDATQYYENRLKYLAAEKAKGENPYPHKFAVSMSIPKYIETYGSLNNGDHVENAEE 140
Query: 445 SVAGRIFNKRSSSVKLLFYDLIGEGMKVQVMADAKNSGLREPEFAKLHASIKRGDIVGVQ 624 S+AGRI +KRSSS KL FYDL G+ KVQVMADA SGL E EF KLH++ KRGDIVGV Sbjct: 141 SLAGRIMSKRSSSSKLFFYDLHGDDFKVQVMADASKSGLDEAEFLKLHSNAKRGDIVGVI 200
Query: 625 GFPGK 639 GFPGK Sbjct: 201 GFPGK 205
>sp|Q6F2U9|SYK_ORYSJ Lysyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1 Length = 602
Score = 149 bits (377), Expect = 9e-36 Identities = 71/125 (56%), Positives = 92/125 (73%) Frame = +1
Query: 265 DDDEADPRLYYENRLKVLGAIKATGENPYPHKFAVSISVPDYVKQFSGLSDGEHKPEWTV 444 DD+E DP YYENRLK L ++KATG NPYPHKF +I+V DY++++ ++ G+ + T Sbjct: 73 DDEEMDPTQYYENRLKALDSLKATGVNPYPHKFLANITVADYIEKYKSMNVGDKLVDVTE 132
Query: 445 SVAGRIFNKRSSSVKLLFYDLIGEGMKVQVMADAKNSGLREPEFAKLHASIKRGDIVGVQ 624 +AGRI KR+ S KLLFYDL G G KVQV ADA+ S L + EF K H+++KRGDIVGV Sbjct: 133 CLAGRIMTKRAQSSKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLKRGDIVGVC 192
Query: 625 GFPGK 639 G+PGK Sbjct: 193 GYPGK 197
>sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1 SV=3 Length = 597
Score = 127 bits (319), Expect = 5e-29 Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 4/174 (2%) Frame = +1
Query: 130 VSKNALKKALKQQHXXXXXXXXXXXXXXXXXXXXXXVTRTRSPDE----DDDEADPRLYY 297 +SKN LK+ LK + + D +++ DP YY Sbjct: 18 LSKNELKRRLKAEKKVAEKEAKQKELSEKQLSQATAAATNHTTDNGVGPEEESVDPNQYY 77
Query: 298 ENRLKVLGAIKATGENPYPHKFAVSISVPDYVKQFSGLSDGEHKPEWTVSVAGRIFNKRS 477 + R + + +K GE+PYPHKF V IS+ D+++++S L G+H + T+ VAGRI KR+ Sbjct: 78 KIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRA 137
Query: 478 SSVKLLFYDLIGEGMKVQVMADAKNSGLREPEFAKLHASIKRGDIVGVQGFPGK 639 S KL+FYDL GEG+K+QVMA+++N E EF ++ ++RGDI+GVQG PGK Sbjct: 138 SGGKLIFYDLRGEGVKLQVMANSRNY-KSEEEFIHINNKLRRGDIIGVQGNPGK 190
>sp|Q43776|SYK_SOLLC Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1 Length = 588
Score = 126 bits (317), Expect = 8e-29 Identities = 53/125 (42%), Positives = 93/125 (74%) Frame = +1
Query: 265 DDDEADPRLYYENRLKVLGAIKATGENPYPHKFAVSISVPDYVKQFSGLSDGEHKPEWTV 444 ++D+ DP Y NRL+ + +++ +G NPYPHKF +++S+P+++ +++ L+ GE + + Sbjct: 48 ENDDLDPTQYLANRLRNIESLRESGINPYPHKFFITMSIPEFISRYAHLNTGEFPEDIDM 107
Query: 445 SVAGRIFNKRSSSVKLLFYDLIGEGMKVQVMADAKNSGLREPEFAKLHASIKRGDIVGVQ 624 S+AGR+ +KR+SS KL FY+L+G G +VQV+A A++S + +F+ + +KRGDI+GV+ Sbjct: 108 SLAGRVISKRASSSKLYFYELLGGGARVQVLASARDSDVDAVQFSNYQSGVKRGDIIGVR 167
Query: 625 GFPGK 639 G+PGK Sbjct: 168 GYPGK 172
>sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KARS PE=2 SV=1 Length = 597
Score = 125 bits (315), Expect = 1e-28 Identities = 59/125 (47%), Positives = 90/125 (72%) Frame = +1
Query: 265 DDDEADPRLYYENRLKVLGAIKATGENPYPHKFAVSISVPDYVKQFSGLSDGEHKPEWTV 444 +++ DP YY+ R + + +K +GE+PYPHKF V IS+ +++++S L G+H + T+ Sbjct: 67 EEETLDPNQYYKIRSQAIHQLKVSGEDPYPHKFHVDISLTQFIQEYSQLQPGDHLTDITL 126
Query: 445 SVAGRIFNKRSSSVKLLFYDLIGEGMKVQVMADAKNSGLREPEFAKLHASIKRGDIVGVQ 624 VAGRI KR+S KL+FYDL GEG+K+QVMA+++N E EF +++ ++RGDI+GVQ Sbjct: 127 KVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY-KSEEEFVRINNKLRRGDIIGVQ 185
Query: 625 GFPGK 639 G PGK Sbjct: 186 GNPGK 190
>sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1 SV=1 Length = 595
Score = 125 bits (314), Expect = 2e-28 Identities = 68/175 (38%), Positives = 101/175 (57%), Gaps = 3/175 (1%) Frame = +1
Query: 124 QSVSKNALKKALKQQHXXXXXXXXXXXXXXXXXXXXXXV---TRTRSPDEDDDEADPRLY 294 Q +SKN LK+ LK + T +++ DP Y Sbjct: 15 QKLSKNELKRRLKAEKKLAEKEAKQKELSEKQLNQTASAPNHTADNGVGAEEETLDPNQY 74
Query: 295 YENRLKVLGAIKATGENPYPHKFAVSISVPDYVKQFSGLSDGEHKPEWTVSVAGRIFNKR 474 Y+ R + + +K TGE+PYPHKF V IS+ +++++S L G+H + T+ VAGRI KR Sbjct: 75 YKIRSQAVQQLKVTGEDPYPHKFHVDISLTQFIQEYSHLQPGDHLTDVTLKVAGRIHAKR 134
Query: 475 SSSVKLLFYDLIGEGMKVQVMADAKNSGLREPEFAKLHASIKRGDIVGVQGFPGK 639 +S KL+FYDL GEG+K+QVMA+++N E EF ++ ++RGDI+GV+G PGK Sbjct: 135 ASGGKLIFYDLRGEGVKLQVMANSRNY-KSEEEFVHINNKLRRGDIIGVEGNPGK 188
>sp|Q9UUE6|SYKC_SCHPO Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=krs1 PE=2 SV=1 Length = 591
Score = 119 bits (298), Expect = 1e-26 Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 1/174 (0%) Frame = +1
Query: 121 GQSVSKNALKKALKQQHXXXXXXXXXXXXXXXXXXXXXXVTRTRSPDEDDDEADPRLYYE 300 G+ VSK LKK KQ+ V +S + +++ DP Y+E Sbjct: 23 GEQVSKTELKKREKQR-----ARELAKAKKQAEKAASAPVAAPKSSSKKEEDLDPSQYFE 77
Query: 301 NRLKVLGAIKATGE-NPYPHKFAVSISVPDYVKQFSGLSDGEHKPEWTVSVAGRIFNKRS 477 NR + + ++ T + NPYPHKF V+I++P+++ ++ GL+ GE KPE V+VAGR+ R+ Sbjct: 78 NRSRTIMELRQTKDPNPYPHKFQVTITLPEFIAKYEGLARGETKPEVEVAVAGRVLGLRT 137
Query: 478 SSVKLLFYDLIGEGMKVQVMADAKNSGLREPEFAKLHASIKRGDIVGVQGFPGK 639 + KL FY++ +G K+QVM A+++ +FA H ++RGDI+G++G+PG+ Sbjct: 138 AGNKLRFYEIHADGKKLQVMCQAQDAD--TVDFAAQHEHLRRGDIIGIRGYPGR 189
>sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1 Length = 572
Score = 108 bits (269), Expect = 3e-23 Identities = 57/120 (47%), Positives = 85/120 (70%), Gaps = 1/120 (0%) Frame = +1
Query: 271 DEADPRLYYENRLKVLGAIKATGENPYPHKFAVSISVPDYVKQFSGLSDGEHKPEWTVSV 450 D +DP+ Y+ R++++ A +A G+NP+PHKF V+IS+ D++ +++ L + E E VSV Sbjct: 49 DPSDPQEYFNMRVRMIEARRAAGDNPFPHKFNVTISLTDFITKYTPL-EKEQVVEEIVSV 107
Query: 451 AGRIFNKRSSSVKLLFYDLIGEGMKVQVMADAK-NSGLREPEFAKLHASIKRGDIVGVQG 627 AGRI +KR S KL+FYD+ GEG +Q+MA+AK ++G + +F LH IKRGDIVG G Sbjct: 108 AGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTG--DVDFVTLHDRIKRGDIVGFTG 165
>sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=KRS1 PE=1 SV=2 Length = 591
Score = 104 bits (259), Expect = 4e-22 Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 2/175 (1%) Frame = +1
Query: 121 GQSVSKNALKKALKQQHXXXXXXXXXXXXXXXXXXXXXXVTRTRSPDEDDDEADPRLYYE 300 G+ VSK+ LKK +KQ+ ++ + + DP Y+E Sbjct: 24 GEMVSKSELKKRIKQRQVEAKKAAKKAAAQPK--------PASKKKTDLFADLDPSQYFE 75
Query: 301 NRLKVLGAIKATGE-NPYPHKFAVSISVPDYVKQFSGLSDGEHKPEWTVSVAGRIFNKRS 477 R + + ++ T E NPYPHKF VSIS P+++ +++ L GE PE VS+AGRI KR Sbjct: 76 TRSRQIQELRKTHEPNPYPHKFHVSISNPEFLAKYAHLKKGETLPEEKVSIAGRIHAKRE 135
Query: 478 SSVKLLFYDLIGEGMKVQVMADAKNSGLREPE-FAKLHASIKRGDIVGVQGFPGK 639 S KL FY L G+G++VQ+M+ ++ +P+ + K H +KRGDIVGV+G+ G+ Sbjct: 136 SGSKLKFYVLHGDGVEVQLMSQLQD--YCDPDSYEKDHDLLKRGDIVGVEGYVGR 188
>sp|Q4JCI5|SYK_SULAC Lysyl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=lysS PE=3 SV=1 Length = 500
Score = 60.5 bits (145), Expect = 7e-09 Identities = 35/110 (31%), Positives = 61/110 (55%) Frame = +1
Query: 298 ENRLKVLGAIKATGENPYPHKFAVSISVPDYVKQFSGLSDGEHKPEWTVSVAGRIFNKRS 477 E R+K++ +K+ G NPYPHK+ ++ ++ D +K+ + +S AGR+ N R Sbjct: 13 ERRVKIVDELKSKGINPYPHKYDITHTIID-IKKMERSDKPTDAFAFDISTAGRVANIRR 71
Query: 478 SSVKLLFYDLIGEGMKVQVMADAKNSGLREPEFAKLHASIKRGDIVGVQG 627 K+ F D+ EG ++Q+ G R +F ++ + RGDI+GV+G Sbjct: 72 HG-KISFVDIFDEGERLQLQLRVNELGDRYDKFFEI---VDRGDILGVKG 117
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PSL2 |
Definition |
tr|A7PSL2|A7PSL2_VITVI Lysyl-tRNA synthetase OS=Vitis vinifera |
Align length |
125 |
Score (bit) |
163.0 |
E-value |
9.0e-39 |
Report |
|