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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960852
Clone id TST39A01NGRL0008_I12
Library
Length 800
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_I12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTGTGAGCTCCGTCACCATCGCCACAGCTCCCTTCCGCTATGGGCTTCACCTCCTTCGTT
GGCCGCGTCCTCTTTTCTGCAATCTTCATCTTTGCAGCTTGGCACAAAGTAACTGATTTT
GGTCAAGATGGAGGAAGTGCCTTGAAAGCAATGACGCCTAAAGTGGATTTGCTCAGGAAT
CATATAACTTCTTTTGGTGTCTCACCACCAGAAGTGGAGCTTAAGTACTTGCTCATGGCA
GCCATTGCTCTGGAAGGTGTGGGTGGAATCTTGTTCACCCTTGGAACAAGCTTGGGAGCT
TATTTGCTGATTATCTTTCTCACGTTTGTCACCCCCATCATGCATGATTTTTACAATTAT
GATATATCGAGTCGAGAATATGTGACAGAATTTACACAATTTTTAAAGAATCTCTCTCTT
CTGGGAGGTCTTCTTTTCTTCCTAGGCATGAAGAATTATGCCGCCAAAAAGTCGAAGAAA
AAGGTAGTCAAGCCTAAGACCAACTAGACCATTTTGCAAGAACAATTTTGCACACTTGTA
GTTTTGTAGCATCCTACTTCGACAATGTAGCCTCAACGAATTTGTTGTAGGAAATGATCC
ACCTGACCACCCTTGTCAGATGTAATTTATTTCTCAATGATTATNTTGCTGCCATTAGAG
TTGCCATGAGGATGCCGTCTTGAAAAAATGTTTCCAAGGGTAAATTGCAAACATCTTGGT
CCCACCATGTGAAATAGAACCGTAAGATTAAATCTATTAATCTTTTTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q99163
Definition sp|Q99163|XHLB_BACSU Holin OS=Bacillus subtilis
Align length 66
Score (bit) 35.0
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960852|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_I12, 5'
         (767 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99163|XHLB_BACSU Holin OS=Bacillus subtilis GN=xhlB PE=3 SV=1      35   0.46 

>sp|Q99163|XHLB_BACSU Holin OS=Bacillus subtilis GN=xhlB PE=3 SV=1
          Length = 87

 Score = 35.0 bits (79), Expect = 0.46
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +1

Query: 127 DGGSALKAMTPKVDLLRNHITSFGVSPPEVELKYLLMAAIALEGVGGILFTLGTSLGAYL 306
           D G+ ++ +   + L+   +   G SP +++ + +   A AL   G I FT+GT+L A+ 
Sbjct: 5   DKGTVIRTVLLLIALINQTMLMLGKSPLDIQEEQVNQLADALYSAGSIAFTIGTTLAAWF 64

Query: 307 LIIFLT 324
              ++T
Sbjct: 65  KNNYVT 70
tr_hit_id A9NZU1
Definition tr|A9NZU1|A9NZU1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 121
Score (bit) 168.0
E-value 4.0e-40
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960852|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_I12, 5'
         (767 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NZU1|A9NZU1_PICSI Putative uncharacterized protein OS=Picea...   168   4e-40
tr|A9NMI3|A9NMI3_PICSI Putative uncharacterized protein OS=Picea...   167   6e-40
tr|A9TAW7|A9TAW7_PHYPA Predicted protein OS=Physcomitrella paten...   162   2e-38
tr|A9SE37|A9SE37_PHYPA Predicted protein OS=Physcomitrella paten...   153   1e-35
tr|A7NX52|A7NX52_VITVI Chromosome chr5 scaffold_2, whole genome ...   134   9e-30
tr|Q0IXE1|Q0IXE1_ORYSJ Os10g0445500 protein OS=Oryza sativa subs...   132   2e-29
tr|B8BH16|B8BH16_ORYSI Putative uncharacterized protein OS=Oryza...   132   2e-29
tr|Q8H080|Q8H080_ORYSJ Os03g0149200 protein OS=Oryza sativa subs...   131   4e-29
tr|B0FFN1|B0FFN1_ORYSJ HR-like lesion-inducer family protein OS=...   131   4e-29
tr|O22690|O22690_ARATH F19P19.23 protein (At1g04340/F19P19_23) O...   130   1e-28
tr|A2XCK0|A2XCK0_ORYSI Putative uncharacterized protein OS=Oryza...   129   2e-28
tr|A9PE25|A9PE25_POPTR Putative uncharacterized protein OS=Popul...   128   5e-28
tr|B6SJ11|B6SJ11_MAIZE Nicotiana lesion-inducing like OS=Zea may...   127   8e-28
tr|B6T757|B6T757_MAIZE Nicotiana lesion-inducing like OS=Zea may...   126   1e-27
tr|B6SGW1|B6SGW1_MAIZE Nicotiana lesion-inducing like OS=Zea may...   125   3e-27
tr|O23298|O23298_ARATH Elicitor like protein (AT4g14420/dl3250c)...   125   4e-27
tr|B6SK94|B6SK94_MAIZE Nicotiana lesion-inducing like OS=Zea may...   125   4e-27
tr|Q01MB3|Q01MB3_ORYSA OSIGBa0101K10.1 protein (OSIGBa0105N24.5 ...   123   2e-26
tr|A2XQW3|A2XQW3_ORYSI Putative uncharacterized protein OS=Oryza...   123   2e-26
tr|A7NX51|A7NX51_VITVI Chromosome chr5 scaffold_2, whole genome ...   121   6e-26
tr|P93384|P93384_TOBAC Nicotiana tabacum ORF OS=Nicotiana tabacu...   120   8e-26
tr|P93381|P93381_TOBAC Nicotiana tabacum ORF OS=Nicotiana tabacu...   120   8e-26
tr|Q7XSC5|Q7XSC5_ORYSJ Os04g0181100 protein OS=Oryza sativa subs...   120   1e-25
tr|A9PA62|A9PA62_POPTR Putative uncharacterized protein OS=Popul...   117   9e-25
tr|Q8LBI4|Q8LBI4_ARATH Nicotiana lesion-inducing like OS=Arabido...   115   2e-24
tr|B7FH85|B7FH85_MEDTR Putative uncharacterized protein OS=Medic...   113   1e-23
tr|Q9LSW5|Q9LSW5_ARATH Nicotiana lesion-inducing like (At5g43460...   113   2e-23
tr|Q6RJY8|Q6RJY8_CAPAN Putative lesion-inducing protein OS=Capsi...   112   2e-23
tr|A9P9D5|A9P9D5_POPTR Putative uncharacterized protein OS=Popul...   112   2e-23
tr|B6T5P9|B6T5P9_MAIZE Nicotiana lesion-inducing like OS=Zea may...   112   3e-23

>tr|A9NZU1|A9NZU1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 156

 Score =  168 bits (425), Expect = 4e-40
 Identities = 80/121 (66%), Positives = 98/121 (80%), Gaps = 1/121 (0%)
 Frame = +1

Query: 40  MGFTSFVGRVLFSAIFIFAAWHKVTDFGQDGGSALKAMTPKVDLLRNHITSF-GVSPPEV 216
           MGF SF GRVLFS+IFI AAW K+ DFG DGG+A K+M PK+ L +NH+T+  GV  PEV
Sbjct: 1   MGFISFAGRVLFSSIFILAAWQKINDFGADGGAAAKSMEPKLVLFKNHVTTLLGVQVPEV 60

Query: 217 ELKYLLMAAIALEGVGGILFTLGTSLGAYLLIIFLTFVTPIMHDFYNYDISSREYVTEFT 396
           E+K+LLM AI LEG+GGILF  G++LGAYLL+IFL  V+PIMHDFYNY+++  EYVTEF 
Sbjct: 61  EIKHLLMVAIGLEGIGGILFIFGSTLGAYLLLIFLASVSPIMHDFYNYEMTKPEYVTEFI 120

Query: 397 Q 399
           Q
Sbjct: 121 Q 121


>tr|A9NMI3|A9NMI3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 156

 Score =  167 bits (424), Expect = 6e-40
 Identities = 80/121 (66%), Positives = 98/121 (80%), Gaps = 1/121 (0%)
 Frame = +1

Query: 40  MGFTSFVGRVLFSAIFIFAAWHKVTDFGQDGGSALKAMTPKVDLLRNHITSF-GVSPPEV 216
           MGF SF GRVLFS+IFI AAW K+ DFG DGG+A K+M PK+ L +NH+T+  GV  PEV
Sbjct: 1   MGFISFAGRVLFSSIFILAAWQKINDFGADGGAAAKSMEPKLLLFKNHVTTLLGVQVPEV 60

Query: 217 ELKYLLMAAIALEGVGGILFTLGTSLGAYLLIIFLTFVTPIMHDFYNYDISSREYVTEFT 396
           E+K+LLM AI LEG+GGILF  G++LGAYLL+IFL  V+PIMHDFYNY+++  EYVTEF 
Sbjct: 61  EIKHLLMVAIGLEGIGGILFIFGSTLGAYLLLIFLASVSPIMHDFYNYEMTKPEYVTEFI 120

Query: 397 Q 399
           Q
Sbjct: 121 Q 121


>tr|A9TAW7|A9TAW7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_220472 PE=4 SV=1
          Length = 157

 Score =  162 bits (410), Expect = 2e-38
 Identities = 79/121 (65%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
 Frame = +1

Query: 40  MGFTSFVGRVLFSAIFIFAAWHKVTDFGQDGGSALKAMTPKVDLLRNHI-TSFGVSPPEV 216
           MGF SFVGRV FSAIFI AAW K+ DFG DGGSALK + PK+DL + HI  +     P V
Sbjct: 1   MGFISFVGRVTFSAIFILAAWQKIQDFGDDGGSALKTLEPKLDLFKGHIFETLHFKVPPV 60

Query: 217 ELKYLLMAAIALEGVGGILFTLGTSLGAYLLIIFLTFVTPIMHDFYNYDISSREYVTEFT 396
           E K+LLM AIALEG GG+LFT+G+S+GAYLL+IFL  +TPI+HDFYNY++SS EYV +F 
Sbjct: 61  ETKHLLMGAIALEGFGGLLFTVGSSVGAYLLLIFLAAITPIIHDFYNYELSSPEYVHQFN 120

Query: 397 Q 399
           Q
Sbjct: 121 Q 121


>tr|A9SE37|A9SE37_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_211347 PE=4 SV=1
          Length = 161

 Score =  153 bits (387), Expect = 1e-35
 Identities = 80/145 (55%), Positives = 96/145 (66%), Gaps = 4/145 (2%)
 Frame = +1

Query: 40  MGFTSFVGRVLFSAIFIFAAWHKVTDFGQDGGSALKAMTPKVDLLRNHITS----FGVSP 207
           MGF SF+GRV FSAIFI AAW K+ DFGQDGG AL+AM PK  L   ++          P
Sbjct: 1   MGFMSFMGRVTFSAIFILAAWQKIQDFGQDGGEALRAMDPKFSLFLKNVNEALNLHLTLP 60

Query: 208 PEVELKYLLMAAIALEGVGGILFTLGTSLGAYLLIIFLTFVTPIMHDFYNYDISSREYVT 387
             VE K+LLM AIALEG+GGILFTLG++LGAYLL+IFL  VTP+MHDFYNYDI++ +Y+ 
Sbjct: 61  SGVETKHLLMVAIALEGLGGILFTLGSTLGAYLLLIFLAAVTPVMHDFYNYDIATGDYLH 120

Query: 388 EFTQXXXXXXXXXXXXXXXXMKNYA 462
           +F                  MKN A
Sbjct: 121 QFNSFLKNLSLFGALLFFLGMKNSA 145


>tr|A7NX52|A7NX52_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020183001
           PE=4 SV=1
          Length = 157

 Score =  134 bits (336), Expect = 9e-30
 Identities = 60/119 (50%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
 Frame = +1

Query: 40  MGFTSFVGRVLFSAIFIFAAWHKVTDFGQDGGSALKAMTPKVDLLRNHITS-FGVSPPEV 216
           M F SFVGRVLF+++FI +AW +  +FG DGG A++++ PK+D+   H+++  GV  PEV
Sbjct: 1   MAFVSFVGRVLFASVFILSAWQEFNEFGVDGGPAVESLAPKLDVFSKHVSANVGVQVPEV 60

Query: 217 ELKYLLMAAIALEGVGGILFTLGTSLGAYLLIIFLTFVTPIMHDFYNYDISSREYVTEF 393
           E+K L+ A+IAL+G+GG+LF  G+SLGA+LL++    V PI++DFYNYD+  +E+V  F
Sbjct: 61  EIKNLVAASIALKGLGGLLFIFGSSLGAHLLLLHQAIVIPILYDFYNYDVDKKEFVVLF 119


>tr|Q0IXE1|Q0IXE1_ORYSJ Os10g0445500 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0445500 PE=2 SV=1
          Length = 158

 Score =  132 bits (333), Expect = 2e-29
 Identities = 63/121 (52%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
 Frame = +1

Query: 40  MGFTSFVGRVLFSAIFIFAAWHKVTDFGQDGGSALKAMTPKVD-LLRNHITSFGVSPPEV 216
           MGF SF GRVLF+A F+ +A+ + ++FG DGG A KA+ PK + ++ N  T  G+  P +
Sbjct: 1   MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60

Query: 217 ELKYLLMAAIALEGVGGILFTLGTSLGAYLLIIFLTFVTPIMHDFYNYDISSREYVTEFT 396
           ELK+++ A I+L+G+GG+LF L +SLGAYLL+  L F+TP++HDFYNYDI S E+V  FT
Sbjct: 61  ELKHIVAAMISLKGLGGLLFILSSSLGAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120

Query: 397 Q 399
           +
Sbjct: 121 K 121


>tr|B8BH16|B8BH16_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33813 PE=4 SV=1
          Length = 158

 Score =  132 bits (333), Expect = 2e-29
 Identities = 63/121 (52%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
 Frame = +1

Query: 40  MGFTSFVGRVLFSAIFIFAAWHKVTDFGQDGGSALKAMTPKVD-LLRNHITSFGVSPPEV 216
           MGF SF GRVLF+A F+ +A+ + ++FG DGG A KA+ PK + ++ N  T  G+  P +
Sbjct: 1   MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60

Query: 217 ELKYLLMAAIALEGVGGILFTLGTSLGAYLLIIFLTFVTPIMHDFYNYDISSREYVTEFT 396
           ELK+++ A I+L+G+GG+LF L +SLGAYLL+  L F+TP++HDFYNYDI S E+V  FT
Sbjct: 61  ELKHIVAAMISLKGLGGLLFILSSSLGAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120

Query: 397 Q 399
           +
Sbjct: 121 K 121


>tr|Q8H080|Q8H080_ORYSJ Os03g0149200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0050N02.11 PE=2 SV=1
          Length = 157

 Score =  131 bits (330), Expect = 4e-29
 Identities = 59/119 (49%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
 Frame = +1

Query: 40  MGFTSFVGRVLFSAIFIFAAWHKVTDFGQDGGSALKAMTPKVDLLRNHITS-FGVSPPEV 216
           MGF SF GRVLF+++F+ +A+ + ++FG DGG A KA+ PK ++   +I++  GV+ P V
Sbjct: 1   MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60

Query: 217 ELKYLLMAAIALEGVGGILFTLGTSLGAYLLIIFLTFVTPIMHDFYNYDISSREYVTEF 393
           ELK+++ A I L+G+GG+LF L +S GAYLL+I+L F+TP+++DFYNYD+   E+V  F
Sbjct: 61  ELKHIVAATIGLKGLGGLLFILSSSFGAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLF 119


>tr|B0FFN1|B0FFN1_ORYSJ HR-like lesion-inducer family protein
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 158

 Score =  131 bits (330), Expect = 4e-29
 Identities = 63/121 (52%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
 Frame = +1

Query: 40  MGFTSFVGRVLFSAIFIFAAWHKVTDFGQDGGSALKAMTPKVD-LLRNHITSFGVSPPEV 216
           MGF SF GRVLF+A F+ +A+ + ++FG DGG A KA+ PK + ++ N  T  G+  P +
Sbjct: 1   MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60

Query: 217 ELKYLLMAAIALEGVGGILFTLGTSLGAYLLIIFLTFVTPIMHDFYNYDISSREYVTEFT 396
           ELK+ + A I+L+G+GG+LF L +SLGAYLL+  L F+TP++HDFYNYDI S E+V  FT
Sbjct: 61  ELKHTVAAMISLKGLGGLLFILSSSLGAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120

Query: 397 Q 399
           +
Sbjct: 121 K 121


>tr|O22690|O22690_ARATH F19P19.23 protein (At1g04340/F19P19_23)
           OS=Arabidopsis thaliana GN=At1g04340 PE=2 SV=1
          Length = 159

 Score =  130 bits (327), Expect = 1e-28
 Identities = 62/124 (50%), Positives = 89/124 (71%), Gaps = 4/124 (3%)
 Frame = +1

Query: 40  MGFTSFVGRVLFSAIFIFAAWHKVTDFGQDGGSALKAMTPKVDLLRNHITSF-GVSPPEV 216
           MGF SF+GRVLF+++FI +AW    DFG DGG A K + PK+DL + H++S  GVS P +
Sbjct: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGTDGGPAAKELAPKLDLTKAHLSSILGVSLPNL 60

Query: 217 ELKYLLMAAIALEGVGGILFTLGTSLGAYLLIIFLTFVTPIMHDFYNYDISSREY---VT 387
           E+K ++ A +AL+G+GG+LF +G   GAYLL ++L  V+PI++DFYNY    R++   +T
Sbjct: 61  EVKQVVWAIVALKGLGGLLFVIGNIFGAYLLAVYLVVVSPILYDFYNYGPEDRQFSLLLT 120

Query: 388 EFTQ 399
           EF Q
Sbjct: 121 EFLQ 124