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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960858
Clone id TST39A01NGRL0008_I18
Library
Length 631
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_I18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CTGTTCATCAGTAACCAACACACAAATTGACATGCAATGCAATGGTGAGCCGATGCCCAT
CTTTTCATCGAGGAATGAAAGAGATCGAAAACAAGAACAATCTGGTTTAACCAAGTCTTC
AAAGAAGGCAGCTAGCTTGAGTCAAGAAGAGCCAGGAACTCCTGTTGCAAAAAGGGGAGG
GCAAGCTATTGGGAAGCTTGGGAGGCAAGGACATTTAGATGTTTACAACAACCATAGGAA
TAACCATAGGTTTCCATCACCAACTCATGAAGACAAGGATGGAGCACAGGGAGGAGTTGC
TAGCTCTCACACGTCAACAGAGCCAGTCGTCAATTCACCATTGAGGTCACCTGCAAGGTT
CTTAAGCTTGAGGGGAAAAAACACACATGAGCCTTCTAAGCATGGCGACAATGAGGCTGC
AGAGAAGCATGGGTCTTCTGGCTTTAGCAGGTTCTTTGCCAGAACAAAAAGTGGGCACTG
AATTTGTCTCTAGAATTTTGTCTCGTACAATCTGCCATGCAGGTTTTCTCCTTTTCCTAG
CCTTGTTCAGTGAGGATTCCAAGGTTTATCCCCAGAACAGCTACNGTAGGCTCTTGTAAA
ATGGGACATTAGGGTGTTCTCTCTTCATTAG
■■Homology search results ■■ -
sp_hit_id Q01408
Definition sp|Q01408|UVE1_NEUCR UV-damage endonuclease OS=Neurospora crassa
Align length 73
Score (bit) 34.3
E-value 0.55
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960858|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_I18, 5'
         (631 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01408|UVE1_NEUCR UV-damage endonuclease OS=Neurospora crassa...    34   0.55 
sp|P33479|IE18_SUHVK Immediate-early protein IE180 OS=Suid herpe...    34   0.72 
sp|Q3TJM4|CENPT_MOUSE Centromere protein T OS=Mus musculus GN=Ce...    33   0.93 
sp|Q04233|GIS4_YEAST Protein GIS4 OS=Saccharomyces cerevisiae GN...    32   2.1  
sp|Q54RR9|Y9844_DICDI Probable serine/threonine-protein kinase D...    31   4.6  
sp|P11675|IE18_SUHVF Immediate-early protein IE180 OS=Suid herpe...    31   4.6  
sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxilia...    30   7.9  

>sp|Q01408|UVE1_NEUCR UV-damage endonuclease OS=Neurospora crassa
           GN=uve-1 PE=2 SV=2
          Length = 656

 Score = 34.3 bits (77), Expect = 0.55
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +2

Query: 260 PTHEDKDGAQGGVASSHTSTEPVVNSPLRSPARFLSLRGKNTHEPSKHGDNEAAEKHGSS 439
           P+ + K  A     S  ++    ++S   SPAR L   G+N  +PS   D +  ++ G  
Sbjct: 2   PSRKSKAAALDTPQSESSTFSSTLDSSAPSPARNLRRSGRNILQPSSEKDRDHEKRSGEE 61

Query: 440 GFSRFFARTKSGH 478
              R   +  +GH
Sbjct: 62  LAGRMMGKDANGH 74


>sp|P33479|IE18_SUHVK Immediate-early protein IE180 OS=Suid
           herpesvirus 1 (strain Kaplan) GN=IE PE=3 SV=1
          Length = 1446

 Score = 33.9 bits (76), Expect = 0.72
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
 Frame = +2

Query: 143 QEEPGTPVAKRGGQAIGKLGRQGHLDVYNNHR--NNHRFPSPT--HEDKDGAQGGVA-SS 307
           ++EPG+P A   G+A+ +    GHL +    R  +  R P+P      + GA GG   SS
Sbjct: 109 EDEPGSPAAGSPGRALHQGSEHGHLVLGPRSRAGSGPRPPTPAALAAAEAGAPGGPGRSS 168

Query: 308 HTSTEPVVNS----PLRSPARFLSLRGKNTHEP 394
            ++  P  +S    P  +P R+   RG    EP
Sbjct: 169 PSAASPASSSGSPGPSAAPRRWSPARGDPVGEP 201


>sp|Q3TJM4|CENPT_MOUSE Centromere protein T OS=Mus musculus GN=Cenpt
           PE=2 SV=2
          Length = 515

 Score = 33.5 bits (75), Expect = 0.93
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = +2

Query: 245 HRFPSPTH---EDKDGAQGGVASSHTSTEPVVNS-PLRSPARFLSLRGKNTHEPSKHGDN 412
           H  PSP+    ED +   G  +S       +  S P  SP+ FL  +          G N
Sbjct: 275 HSLPSPSRPGVEDVERVMGPPSSGTRLQSRMSRSGPAASPSPFLEPQPPPAEPREAVGSN 334

Query: 413 EAAE---KHGSSGFSRFFARTKSG 475
           EAAE   + GSSG+    AR  SG
Sbjct: 335 EAAEPKDQEGSSGYEETSARPASG 358


>sp|Q04233|GIS4_YEAST Protein GIS4 OS=Saccharomyces cerevisiae
           GN=GIS4 PE=1 SV=1
          Length = 774

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
 Frame = +2

Query: 149 EPGTPVAKRGGQAIGKLGRQGHLDVYNNHRNNHRFPSPTHEDKDGAQGGVASSHTSTEP- 325
           E     A R  + +  +G       +N H +  +       + D ++ G  S+  S+EP 
Sbjct: 607 ESNVTTAHRSIRTVNSIGEWA----FNRHNSVTKIDKSNSNELDNSKTG-ESTVLSSEPH 661

Query: 326 ----VVNSPLRSPARFLSLRGKNTHEPSKHGDNEAAEKH 430
               + NS   S     SL+ KN+H+P+  G+NE+  K+
Sbjct: 662 PMTQLSNSNTTSSNFSHSLKTKNSHKPNSKGNNESNSKN 700


>sp|Q54RR9|Y9844_DICDI Probable serine/threonine-protein kinase
            DDB_G0282963 OS=Dictyostelium discoideum GN=DDB_G0282963
            PE=3 SV=1
          Length = 1761

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +2

Query: 227  NNHRNNHRFPSPTHEDKDGAQGGVASSHTSTEPVVNSPLRSPARFLSLR 373
            NNH ++H      + +++G Q GVA S +S+ P  +  L SP++  SL+
Sbjct: 1262 NNHHHHHHHHHNNNNNQNGQQEGVADS-SSSSPWSSPALSSPSKQHSLQ 1309


>sp|P11675|IE18_SUHVF Immediate-early protein IE180 OS=Suid
           herpesvirus 1 (strain Indiana-Funkhauser / Becker) GN=IE
           PE=3 SV=2
          Length = 1461

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
 Frame = +2

Query: 143 QEEPGTPVAKRGGQAIGKLGRQGHLDVYNNHR--NNHRFPSPT--HEDKDGAQGGVA-SS 307
           ++EPG+P A   G+A+ +    GHL +    R  +  R P+P      + GA GG   SS
Sbjct: 110 EDEPGSPAAGSPGRALHQGSEHGHLVLGPRSRAGSGPRPPTPAALAAAEAGAPGGPGRSS 169

Query: 308 HTSTEPVVNS-----------PLRSPARFLSLRGKNTHEP 394
            ++  P  +S           P  +P R+   RG    EP
Sbjct: 170 PSAASPASSSSGSSGSSGSPGPSAAPRRWSPARGDPVGEP 209


>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary
           factor 35 kDa subunit-related protein 1 OS=Homo sapiens
           GN=ZRSR1 PE=2 SV=2
          Length = 479

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
 Frame = +2

Query: 137 LSQEEPGTPVAKRGGQAIGKLGRQGHLDVYNNHRNNHRFPSPTHEDK-DGAQGGVASSHT 313
           LS ++ G+   K   +      + GH D Y + +   R PSP H  K +G      SSH 
Sbjct: 353 LSSDQTGSSFGKNSERR----EKMGHHDHYYSRQRGRRNPSPDHTYKRNGESERKKSSHR 408

Query: 314 STEPVVNSPLRSPARFLSLRGKNTHEPSKHGDNEAA-----EKHGSSGFSRFFARTKSGH 478
             +    +           RG+N H     G    +      +  SS   R   R KSG+
Sbjct: 409 GKKSHKRTSKSRERHNSPSRGRNRHRSWDQGRRSQSRRSHRSRSQSSSRCRSRGRRKSGN 468
tr_hit_id Q2THV7
Definition tr|Q2THV7|Q2THV7_FUGRU Membrane-associated DHHC8 zinc finger protein OS=Fugu rubripes
Align length 104
Score (bit) 35.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960858|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_I18, 5'
         (631 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2THV7|Q2THV7_FUGRU Membrane-associated DHHC8 zinc finger pro...    36   2.2  
tr|B3MA92|B3MA92_DROAN GF25137 OS=Drosophila ananassae GN=GF2513...    35   2.9  
tr|B6KNQ3|B6KNQ3_TOXGO Putative uncharacterized protein OS=Toxop...    35   3.7  
tr|Q4RPI3|Q4RPI3_TETNG Chromosome 12 SCAF15007, whole genome sho...    35   4.9  
tr|B8KIQ1|B8KIQ1_9GAMM Putative uncharacterized protein OS=gamma...    35   4.9  
tr|Q7PKW0|Q7PKW0_ANOGA AGAP001716-PA (Fragment) OS=Anopheles gam...    35   4.9  
tr|Q4JSA9|Q4JSA9_ANOGA Tubby (Fragment) OS=Anopheles gambiae GN=...    35   4.9  
tr|Q870W2|Q870W2_NEUCR Putative uncharacterized protein B14A21.1...    34   6.4  
tr|A8PDU1|A8PDU1_COPC7 Predicted protein OS=Coprinopsis cinerea ...    34   6.4  
tr|Q5PP75|Q5PP75_9ALPH Immediate-early protein IE180 OS=Suid her...    34   8.3  
tr|B6MCT1|B6MCT1_BRAFL Putative uncharacterized protein (Fragmen...    34   8.3  
tr|B4G5K2|B4G5K2_DROPE GL24379 OS=Drosophila persimilis GN=GL243...    34   8.3  

>tr|Q2THV7|Q2THV7_FUGRU Membrane-associated DHHC8 zinc finger
           protein OS=Fugu rubripes PE=2 SV=1
          Length = 797

 Score = 35.8 bits (81), Expect = 2.2
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
 Frame = +2

Query: 158 TPVAKRGGQAIGKLGRQGHLDVYNNHRNNHR-----------FPSPTHEDKDGAQGGVAS 304
           TPV +  G  +G+  R     ++ +H +++            + SPTH+ +  A     S
Sbjct: 678 TPVLRHAGSTLGRAPRTSSTSLHTDHSSSNSSHSRVATSDGPYRSPTHQPRSPALPRSPS 737

Query: 305 SHTSTEPVVNSPLRSPARFLSLRGKNTHEPSKHGDNEAAEKHGS 436
                   +++  R+    + + G+    PS HG + +  +HG+
Sbjct: 738 YSHQKLSYISAHERTDREAVKVNGQMDCHPSSHGGSLSPSRHGN 781


>tr|B3MA92|B3MA92_DROAN GF25137 OS=Drosophila ananassae GN=GF25137
           PE=4 SV=1
          Length = 825

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = +2

Query: 140 SQEEPGTPVAKRGGQAIGKLGRQGHLDVYNNHRNNHRFPSPTHEDKDGAQGGVASSHTST 319
           S+  PGTP    GG       +Q HL     H+ +      TH    G Q  +   HT  
Sbjct: 611 SRTRPGTPTMPTGGSVTPTTPQQPHLQHQQQHQQHMLQHPHTHSHPHGQQQPLPHPHTHP 670

Query: 320 EPVVNSP 340
            P  +SP
Sbjct: 671 HPHPHSP 677


>tr|B6KNQ3|B6KNQ3_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_054220 PE=4 SV=1
          Length = 826

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +2

Query: 254 PSPTHEDKDGAQGGVASSHTSTEPVVNSPLRSPARFLSLRGKNTHEPS-KHGDNEAAEKH 430
           P P  E   G Q  V++SH S     + P   PA FL      +   S +H    AA   
Sbjct: 548 PPPPSEVASGVQQDVSASHASAAAASHKPFERPAAFLGCPATPSSSASAQHSSGNAAHAS 607

Query: 431 GSSGF 445
             SGF
Sbjct: 608 SFSGF 612


>tr|Q4RPI3|Q4RPI3_TETNG Chromosome 12 SCAF15007, whole genome shotgun
            sequence OS=Tetraodon nigroviridis GN=GSTENG00031075001
            PE=4 SV=1
          Length = 1086

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
 Frame = +2

Query: 158  TPVAKRGGQAIGKLGRQGHLDVYNNHRNNHR-----------FPSPTHEDKDGAQGGVAS 304
            TPV +  G  +G+  R     ++ +H +++            + SP H+ +  A     S
Sbjct: 967  TPVLRHAGSTLGRGPRTSSTSLHTDHSSSNSSHSRVTASDGPYRSPAHQPRSPALPRSPS 1026

Query: 305  SHTSTEPVVNSPLRSPARFLSLRGKNTHEPSKHGDNEAAEKHGS 436
                    V++  R+    + + G+    PS HG N +  +HG+
Sbjct: 1027 YSHQKLSYVSAHERTDREAMKVNGQMDCHPSAHGANLSPSRHGN 1070


>tr|B8KIQ1|B8KIQ1_9GAMM Putative uncharacterized protein OS=gamma
           proteobacterium NOR5-3 GN=NOR53_2139 PE=4 SV=1
          Length = 93

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 236 RNNHRFPSPTHEDKDGAQGGVASSHTSTEPVVNSPLRSPARFLSLRGKNTHEPSKHGD 409
           R ++  PSP   ++DG        H +  P   +PL + A  L+L G   ++P+ HGD
Sbjct: 10  REDYDGPSPV--ERDGMVWQAQELHLNEVPAALNPLDAMANVLALEGLEDYDPATHGD 65


>tr|Q7PKW0|Q7PKW0_ANOGA AGAP001716-PA (Fragment) OS=Anopheles gambiae
            GN=AGAP001716 PE=4 SV=3
          Length = 1665

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
 Frame = +2

Query: 56   PIFSSRNERDRKQEQSGLTXXXXXXXXLSQEEPGTPVAKR-GGQAIGKLGRQGHLDVYNN 232
            P+FS RN + +  +               Q E  TP+  R       +  +   LD    
Sbjct: 1338 PLFSRRNRQPKAPDADSSKP---------QSESNTPILLRWNANRHNRQSKADSLDSPKK 1388

Query: 233  HRNNHRFPSPTHEDKDGAQG-GVASSHTSTE 322
            HR N   P P++E  DG +  G AS+ + T+
Sbjct: 1389 HRRNGSCPGPSNESTDGGESMGTASTSSQTD 1419


>tr|Q4JSA9|Q4JSA9_ANOGA Tubby (Fragment) OS=Anopheles gambiae GN=D2.2
            PE=4 SV=1
          Length = 1664

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
 Frame = +2

Query: 56   PIFSSRNERDRKQEQSGLTXXXXXXXXLSQEEPGTPVAKR-GGQAIGKLGRQGHLDVYNN 232
            P+FS RN + +  +               Q E  TP+  R       +  +   LD    
Sbjct: 1337 PLFSRRNRQPKAPDADSSKP---------QSESNTPILLRWNANRHNRQSKADSLDSPKK 1387

Query: 233  HRNNHRFPSPTHEDKDGAQG-GVASSHTSTE 322
            HR N   P P++E  DG +  G AS+ + T+
Sbjct: 1388 HRRNGSCPGPSNESTDGGESMGTASTSSQTD 1418


>tr|Q870W2|Q870W2_NEUCR Putative uncharacterized protein B14A21.100
           (Predicted protein) OS=Neurospora crassa GN=B14A21.100
           PE=4 SV=1
          Length = 878

 Score = 34.3 bits (77), Expect = 6.4
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
 Frame = -2

Query: 624 RENTLMSHFTRAYXSCSGDKPWNPH*TRLGKGENLHGRLYETKF*RQIQCPLFVLAKNLL 445
           R N L S    +          NP+ T L    +LHG   +    R I   +  L+ N  
Sbjct: 70  RRNNLKSQRHLSLHGAKLQAQENPNGTSLQPNWSLHGIKPQVSLPRMINLRMVTLSNNCA 129

Query: 444 KPEDPCFSAAS-LSPCLEGSCVFFPLKL-KNLAGDLNGELTTGSVDV*ELATPPCAPS 277
           KP  P FS AS +     G+    P  + + LA   N  +     ++   +  PC PS
Sbjct: 130 KPSRPVFSLASYVKEERSGAIECSPATIARGLAAPPNSTILPKHANLTSQSNVPCIPS 187


>tr|A8PDU1|A8PDU1_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_10453 PE=4
           SV=1
          Length = 1143

 Score = 34.3 bits (77), Expect = 6.4
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +2

Query: 248 RFPSPTHEDKDGAQGGVASSHTS------TEPVVNSPLRSPARFLSLRGKNTHEPSK 400
           R   P HED D     +   HTS      + P+  +PLR  AR  S RG N+  P K
Sbjct: 3   RSRKPVHED-DIVTSRITVKHTSRGYVVNSRPIFTTPLRKNARRFSSRGSNSESPRK 58


>tr|Q5PP75|Q5PP75_9ALPH Immediate-early protein IE180 OS=Suid
           herpesvirus 1 GN=IE180(TRS) PE=4 SV=1
          Length = 1446

 Score = 33.9 bits (76), Expect = 8.3
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
 Frame = +2

Query: 143 QEEPGTPVAKRGGQAIGKLGRQGHLDVYNNHR--NNHRFPSPT--HEDKDGAQGGVA-SS 307
           ++EPG+P A   G+A+ +    GHL +    R  +  R P+P      + GA GG   SS
Sbjct: 109 EDEPGSPAAGSPGRALHQGSEHGHLVLGPRSRAGSGPRPPTPAALAAAEAGAPGGPGRSS 168

Query: 308 HTSTEPVVNS----PLRSPARFLSLRGKNTHEP 394
            ++  P  +S    P  +P R+   RG    EP
Sbjct: 169 PSAASPASSSGSPGPSAAPRRWSPARGDPVGEP 201