DK960866
Clone id TST39A01NGRL0008_J02
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_J02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CGTTGTCGATGTTTCGAGTGGTGTCACAATGCCAGATGGGCTCTTGAAGGACCCGGCTCG
TGTTTTATCCTTCATAGATGCTGTGAAAGGCTGCGCAAATCCCATCTAACCTTGCAATTT
ATGTGCTTGAGTGGGGCGCAAAGCTACTCAAATCAGATCGGACATGAGGAATCACTTTGA
TGGAAGTGGTACTCATCTGTCACAAATTGAAGGCAACAGAGATTTTTGGTGATGCAGCAG
GAAAGCACCAGCATCAACATGCGAAACCCAAGCCGAGTGAAGCACGCGGATACATCCTTA
GTTTGTTTCACCACCTTTGAAGGCTTGTTTTAGCTTTGAGTCTTGTGCTACACAAGCTTA
GCCTTAACATAAGCTGTGTATCATGGTGGTGAGCTGATGTAAGGTGGACATAACAGTGTT
TTGGATGAGTTGCTCTGATTCAATGTATCCTTTTGAGGTGTTAATCTCATTGTCGCTTTT
CACAGCATGAATGATCACTGACAGAGAGAGGATGATTATTAGCAAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id P12289
Definition sp|P12289|TRPF_CAUCR N-(5'-phosphoribosyl)anthranilate isomerase OS=Caulobacter crescentus
Align length 29
Score (bit) 33.5
E-value 0.63
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960866|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_J02, 5'
(523 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P12289|TRPF_CAUCR N-(5'-phosphoribosyl)anthranilate isomerase... 33 0.63
sp|Q0B004|TRPF_SYNWW N-(5'-phosphoribosyl)anthranilate isomerase... 32 1.8
sp|A5GES5|TRPF_GEOUR N-(5'-phosphoribosyl)anthranilate isomerase... 31 4.1
sp|Q9PK67|TRPF_CHLMU N-(5'-phosphoribosyl)anthranilate isomerase... 31 4.1
sp|Q9X4E3|TRPF_RHOS4 N-(5'-phosphoribosyl)anthranilate isomerase... 30 5.3
sp|Q59649|TRPF_PSEAE N-(5'-phosphoribosyl)anthranilate isomerase... 30 5.3
sp|Q02PS6|TRPF_PSEAB N-(5'-phosphoribosyl)anthranilate isomerase... 30 5.3
sp|A8HQ40|TRPF_AZOC5 N-(5'-phosphoribosyl)anthranilate isomerase... 30 5.3
sp|P30650|ZK643_CAEEL G-protein coupled receptor ZK643.3 OS=Caen... 30 6.9
sp|Q0BQI7|TRPF_GRABC N-(5'-phosphoribosyl)anthranilate isomerase... 30 7.0

>sp|P12289|TRPF_CAUCR N-(5'-phosphoribosyl)anthranilate isomerase
OS=Caulobacter crescentus GN=trpF PE=3 SV=1
Length = 219

Score = 33.5 bits (75), Expect = 0.63
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +2

Query: 2 VVDVSSGVTMPDGLLKDPARVLSFIDAVK 88
+VDVSSGV GL KDPA + +F+DAVK
Sbjct: 188 LVDVSSGVERGPGL-KDPALISAFLDAVK 215


>sp|Q0B004|TRPF_SYNWW N-(5'-phosphoribosyl)anthranilate isomerase
OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=trpF PE=3 SV=1
Length = 204

Score = 32.0 bits (71), Expect = 1.8
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +2

Query: 2 VVDVSSGVTMPDGLLKDPARVLSFIDAVK 88
VVDVSSGV P G KDPA++ FI+ V+
Sbjct: 173 VVDVSSGVEYPSG-GKDPAKIREFINIVQ 200


>sp|A5GES5|TRPF_GEOUR N-(5'-phosphoribosyl)anthranilate isomerase
OS=Geobacter uraniireducens (strain Rf4) GN=trpF PE=3
SV=1
Length = 203

Score = 30.8 bits (68), Expect = 4.1
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVKG 91
VDVSSGV G+ KDPA+V FI KG
Sbjct: 175 VDVSSGVESAPGV-KDPAKVREFIKRAKG 202


>sp|Q9PK67|TRPF_CHLMU N-(5'-phosphoribosyl)anthranilate isomerase
OS=Chlamydia muridarum GN=trpF PE=3 SV=1
Length = 208

Score = 30.8 bits (68), Expect = 4.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVKGCAN 100
+DVSSGV P L KD + + ID+ KG N
Sbjct: 174 IDVSSGVERPGVLRKDVTLMQALIDSAKGVGN 205


>sp|Q9X4E3|TRPF_RHOS4 N-(5'-phosphoribosyl)anthranilate isomerase
OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
NCIB 8253 / DSM 158) GN=trpF PE=3 SV=1
Length = 212

Score = 30.4 bits (67), Expect = 5.3
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
VDVSSGV G+ KDPAR+ +F+ A +
Sbjct: 186 VDVSSGVESAPGV-KDPARIAAFLQAAR 212


>sp|Q59649|TRPF_PSEAE N-(5'-phosphoribosyl)anthranilate isomerase
OS=Pseudomonas aeruginosa GN=trpF PE=3 SV=1
Length = 211

Score = 30.4 bits (67), Expect = 5.3
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
VDVS GV G+ KD ARV +F+DAV+
Sbjct: 178 VDVSGGVEASKGI-KDAARVRAFVDAVR 204


>sp|Q02PS6|TRPF_PSEAB N-(5'-phosphoribosyl)anthranilate isomerase
OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=trpF
PE=3 SV=1
Length = 211

Score = 30.4 bits (67), Expect = 5.3
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
VDVS GV G+ KD ARV +F+DAV+
Sbjct: 178 VDVSGGVEASKGI-KDAARVRAFVDAVR 204


>sp|A8HQ40|TRPF_AZOC5 N-(5'-phosphoribosyl)anthranilate isomerase
OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=trpF PE=3 SV=1
Length = 228

Score = 30.4 bits (67), Expect = 5.3
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
VDVSSGV GL K P ++L+F+ AVK
Sbjct: 185 VDVSSGVETAPGL-KSPEKILAFVRAVK 211


>sp|P30650|ZK643_CAEEL G-protein coupled receptor ZK643.3
OS=Caenorhabditis elegans GN=ZK643.3 PE=1 SV=4
Length = 480

Score = 30.0 bits (66), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3

Query: 272 LGFRMLMLVLSCCITKNLCCLQFVTDEYHFHQSDSSCP 159
L F+ ++V CC CC + +YH DS CP
Sbjct: 111 LPFQFDLIVKDCCSAARYCCRNTLV-KYHHRVDDSPCP 147


>sp|Q0BQI7|TRPF_GRABC N-(5'-phosphoribosyl)anthranilate isomerase
OS=Granulibacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1) GN=trpF PE=3 SV=1
Length = 209

Score = 30.0 bits (66), Expect = 7.0
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2

Query: 2 VVDVSSGVTMPDGLLKDPARVLSFIDAVK 88
+VDVSSGV G KDPA + SF+ AV+
Sbjct: 180 IVDVSSGVEQSRGR-KDPALIRSFLSAVR 207


tr_hit_id A9P2D5
Definition tr|A9P2D5|A9P2D5_PICSI N-(5'-phosphoribosyl)anthranilate isomerase OS=Picea sitchensis
Align length 28
Score (bit) 43.1
E-value 0.008
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960866|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_J02, 5'
(523 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9P2D5|A9P2D5_PICSI N-(5'-phosphoribosyl)anthranilate isomera... 43 0.008
tr|A9SDR6|A9SDR6_PHYPA N-(5'-phosphoribosyl)anthranilate isomera... 40 0.054
tr|B6U7W9|B6U7W9_MAIZE Tryptophan biosynthesis protein trpCF OS=... 40 0.092
tr|B4FZQ3|B4FZQ3_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.092
tr|Q6ETX4|Q6ETX4_ORYSJ N-(5'-phosphoribosyl)anthranilate isomera... 39 0.21
tr|B8AFB5|B8AFB5_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.21
tr|A8J650|A8J650_CHLRE N-(5'-phosphoribosyl)anthranilate isomera... 36 1.0
tr|B0T692|B0T692_CAUSK N-(5'-phosphoribosyl)anthranilate isomera... 34 5.1
tr|B8H663|B8H663_CAUCR N-(5'-phosphoribosyl)anthranilate isomera... 33 6.6
tr|Q9SPW1|Q9SPW1_ARATH N-(5'-phosphoribosyl)anthranilate isomera... 33 8.6
tr|Q9SPW0|Q9SPW0_ARATH N-(5'-phosphoribosyl)anthranilate isomera... 33 8.6
tr|Q9SPV9|Q9SPV9_ARATH N-(5'-phosphoribosyl)anthranilate isomera... 33 8.6
tr|Q9SPV7|Q9SPV7_ARATH N-(5'-phosphoribosyl)anthranilate isomera... 33 8.6
tr|Q9FFF7|Q9FFF7_ARATH N-(5'-phosphoribosyl)anthranilate isomera... 33 8.6
tr|Q7G9J9|Q7G9J9_ARATH N-(5'-phosphoribosyl)anthranilate isomera... 33 8.6
tr|Q42527|Q42527_ARATH N-(5'-phosphoribosyl)anthranilate isomera... 33 8.6
tr|Q42440|Q42440_ARATH N-(5'-phosphoribosyl)anthranilate isomera... 33 8.6
tr|Q39245|Q39245_ARATH N-(5'-phosphoribosyl)anthranilate isomera... 33 8.6

>tr|A9P2D5|A9P2D5_PICSI N-(5'-phosphoribosyl)anthranilate isomerase
OS=Picea sitchensis PE=2 SV=1
Length = 330

Score = 43.1 bits (100), Expect = 0.008
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
VDVSSG+ PDG+ KDPARV SF++AV+
Sbjct: 296 VDVSSGICAPDGIRKDPARVASFMNAVR 323


>tr|A9SDR6|A9SDR6_PHYPA N-(5'-phosphoribosyl)anthranilate isomerase
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_17202 PE=3 SV=1
Length = 211

Score = 40.4 bits (93), Expect = 0.054
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
VDVSSG+ PDG+ KDPAR+ +F+ AV+
Sbjct: 183 VDVSSGIAGPDGIRKDPARIQAFVHAVQ 210


>tr|B6U7W9|B6U7W9_MAIZE Tryptophan biosynthesis protein trpCF OS=Zea
mays PE=2 SV=1
Length = 262

Score = 39.7 bits (91), Expect = 0.092
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
+DVSSG+ PDGL KDP R+ SF+ +VK
Sbjct: 230 LDVSSGICFPDGLRKDPKRMCSFMSSVK 257


>tr|B4FZQ3|B4FZQ3_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 308

Score = 39.7 bits (91), Expect = 0.092
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
+DVSSG+ PDGL KDP R+ SF+ +VK
Sbjct: 276 LDVSSGICFPDGLRKDPKRMCSFMSSVK 303


>tr|Q6ETX4|Q6ETX4_ORYSJ N-(5'-phosphoribosyl)anthranilate isomerase
OS=Oryza sativa subsp. japonica GN=P0006C08.30 PE=2 SV=1
Length = 278

Score = 38.5 bits (88), Expect = 0.21
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
VDVSSG+ PDG+ KDP R+ SF+ VK
Sbjct: 245 VDVSSGICAPDGIRKDPTRISSFMRNVK 272


>tr|B8AFB5|B8AFB5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06663 PE=4 SV=1
Length = 140

Score = 38.5 bits (88), Expect = 0.21
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
VDVSSG+ PDG+ KDP R+ SF+ VK
Sbjct: 107 VDVSSGICAPDGIRKDPTRISSFMRNVK 134


>tr|A8J650|A8J650_CHLRE N-(5'-phosphoribosyl)anthranilate isomerase
OS=Chlamydomonas reinhardtii GN=ASB2 PE=3 SV=1
Length = 265

Score = 36.2 bits (82), Expect = 1.0
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
VDVSSGV PDGL KD +V SFI + K
Sbjct: 233 VDVSSGVCGPDGLKKDHGKVSSFISSAK 260


>tr|B0T692|B0T692_CAUSK N-(5'-phosphoribosyl)anthranilate isomerase
OS=Caulobacter sp. (strain K31) GN=Caul_4975 PE=3 SV=1
Length = 213

Score = 33.9 bits (76), Expect = 5.1
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +2

Query: 2 VVDVSSGVTMPDGLLKDPARVLSFIDAVK 88
+VDVSSGV GL KDPA + +F+DAVK
Sbjct: 184 LVDVSSGVERGPGL-KDPALITAFLDAVK 211


>tr|B8H663|B8H663_CAUCR N-(5'-phosphoribosyl)anthranilate isomerase
OS=Caulobacter crescentus NA1000 GN=CCNA_03659 PE=4 SV=1
Length = 219

Score = 33.5 bits (75), Expect = 6.6
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +2

Query: 2 VVDVSSGVTMPDGLLKDPARVLSFIDAVK 88
+VDVSSGV GL KDPA + +F+DAVK
Sbjct: 188 LVDVSSGVERGPGL-KDPALISAFLDAVK 215


>tr|Q9SPW1|Q9SPW1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase
OS=Arabidopsis thaliana GN=PAI1 PE=3 SV=1
Length = 275

Score = 33.1 bits (74), Expect = 8.6
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2

Query: 5 VDVSSGVTMPDGLLKDPARVLSFIDAVK 88
+DVSSG+ DG+ KD +++ SFI AV+
Sbjct: 244 IDVSSGICGTDGMQKDKSKISSFITAVR 271