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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960874
Clone id TST39A01NGRL0008_J11
Library
Length 684
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_J11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGAAAGGCCTCTGCGCCTCTTTTCACTGGAGATCTGCATCTCATTCCAGCCATCTCCCTC
TCTCTCTCTTTTGTGCTCTACATACTCACGCGCCTGCACACACATTTTCTGCTCTGTAAG
TGCGCACTCATATTTTATCACACATTAACGCGCAGAGACGACAACCTCCCTTCTTACACA
CAGCAAACTTAAAAGAAAACGATCGTCCACCACACATTCATCTCTCTCTCTCTCTCTCTC
TCTCACACACACACACACACACACACACACACACACACACATCCCGCTGTTACAGGGAAG
AGCGCAATTTCTCACAGAGACTGGACGCCGGCCCTTCAACCACCCCTTTCCAGCAAGCCG
TCCTTCCTCTGCTAATTGGTAGCTGGCAGGATGGCTTCCTTTACGGCATGTAGACCAGTT
GCCGGCTTTTTGTCCCGAGACAGCCAGCAGAGCACAAATGAAGCGTCGCAACGTAACCGT
CTTGCAAGCCAAACCAAGTGTGGATGGAAGTTTTCCCAAGGAGTACGGGCCTTTGTTTCT
TCAAGTAGCACATCTTGTCAAAAGAAACGATCGTGGGATCTTGTTCTGGCATCAGCTTCC
CCTGCTTCCCCGCCTTTGGAAAAACCTGCTACACCTGCAAAATCAACATCTGAAGCTGCC
TTGATCCTCATTCGGCATGGAGAG
■■Homology search results ■■ -
sp_hit_id Q8CNL3
Definition sp|Q8CNL3|LEU1_STAES 2-isopropylmalate synthase OS=Staphylococcus epidermidis (strain ATCC 12228)
Align length 65
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960874|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_J11, 5'
         (684 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CNL3|LEU1_STAES 2-isopropylmalate synthase OS=Staphylococcu...    33   1.4  
sp|Q5HMF9|LEU1_STAEQ 2-isopropylmalate synthase OS=Staphylococcu...    33   1.4  
sp|Q8HYC3|UR2R_MACMU Urotensin II receptor OS=Macaca mulatta GN=...    32   4.1  

>sp|Q8CNL3|LEU1_STAES 2-isopropylmalate synthase OS=Staphylococcus
           epidermidis (strain ATCC 12228) GN=leuA PE=3 SV=1
          Length = 511

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
 Frame = +2

Query: 428 FCPETASRAQMK----------RRNVTVLQAKPSVDGSFPKEYGPLFLQVAHLVKRNDRG 577
           F PE A+R ++               T++    +V  S+P EYG +F Q+   VK N + 
Sbjct: 138 FSPEDATRTEIPFLIECVQTAINAGATIINIPDTVGFSYPTEYGEIFKQLTQAVKSNSKI 197

Query: 578 ILFWH 592
           I   H
Sbjct: 198 IFSAH 202


>sp|Q5HMF9|LEU1_STAEQ 2-isopropylmalate synthase OS=Staphylococcus
           epidermidis (strain ATCC 35984 / RP62A) GN=leuA PE=3
           SV=1
          Length = 511

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
 Frame = +2

Query: 428 FCPETASRAQMK----------RRNVTVLQAKPSVDGSFPKEYGPLFLQVAHLVKRNDRG 577
           F PE A+R ++               T++    +V  S+P EYG +F Q+   VK N + 
Sbjct: 138 FSPEDATRTEIPFLIECVQTAINAGATIINIPDTVGFSYPTEYGEIFKQLTQAVKSNSKI 197

Query: 578 ILFWH 592
           I   H
Sbjct: 198 IFSAH 202


>sp|Q8HYC3|UR2R_MACMU Urotensin II receptor OS=Macaca mulatta
           GN=UTS2R PE=2 SV=1
          Length = 389

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 556 CQKKRSWDLVLASASPASPPLEKPATPA 639
           C  + +  LVLA+A+PA P LE P  PA
Sbjct: 362 CSPQPTESLVLAAAAPAGPALESPGDPA 389
tr_hit_id Q8LBD7
Definition tr|Q8LBD7|Q8LBD7_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana
Align length 98
Score (bit) 37.7
E-value 0.69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960874|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_J11, 5'
         (684 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8LBD7|Q8LBD7_ARATH Putative uncharacterized protein OS=Arabi...    38   0.69 
tr|Q9LM13|Q9LM13_ARATH F16L1.10 protein (At1g22170) OS=Arabidops...    37   0.91 
tr|Q8L832|Q8L832_ARATH Putative uncharacterized protein At1g2217...    34   7.7  
tr|Q6Z8J0|Q6Z8J0_ORYSJ Os02g0751800 protein OS=Oryza sativa subs...    34   7.7  
tr|B8AIS1|B8AIS1_ORYSI Putative uncharacterized protein OS=Oryza...    34   7.7  
tr|A3ABF0|A3ABF0_ORYSJ Putative uncharacterized protein OS=Oryza...    34   7.7  

>tr|Q8LBD7|Q8LBD7_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 334

 Score = 37.7 bits (86), Expect = 0.69
 Identities = 30/98 (30%), Positives = 45/98 (45%)
 Frame = +1

Query: 391 MASFTACRPVAGFLSRDSQQSTNEASQRNRLASQTKCGWKFSQGVRAFVXXXXXXCQKKR 570
           MA+ T+ + V  F S  S  S+          + ++CG+K    + +F       C+ K 
Sbjct: 1   MATATSHQSVVSFASLRSSPSS----------TISQCGFKIDSSL-SFTSKKTNFCKIKA 49

Query: 571 SWDLVLASASPASPPLEKPATPAKSTSEAALILIRHGE 684
               V  + +  SP    P    K ++EAALILIRHGE
Sbjct: 50  MASSVSFNNTLLSPSKTIPDNSQKKSNEAALILIRHGE 87


>tr|Q9LM13|Q9LM13_ARATH F16L1.10 protein (At1g22170) OS=Arabidopsis
           thaliana GN=At1g22170 PE=2 SV=1
          Length = 334

 Score = 37.4 bits (85), Expect = 0.91
 Identities = 30/98 (30%), Positives = 44/98 (44%)
 Frame = +1

Query: 391 MASFTACRPVAGFLSRDSQQSTNEASQRNRLASQTKCGWKFSQGVRAFVXXXXXXCQKKR 570
           MA+ T+ + V  F S  S  S+          + ++CG+K    + +F       C+ K 
Sbjct: 1   MATATSHQSVVSFASLRSSPSS----------TISQCGFKIDSSL-SFTSKKTNFCKIKA 49

Query: 571 SWDLVLASASPASPPLEKPATPAKSTSEAALILIRHGE 684
               V    +  SP    P    K ++EAALILIRHGE
Sbjct: 50  MASSVSYDNTLLSPSKTIPDNSQKKSNEAALILIRHGE 87


>tr|Q8L832|Q8L832_ARATH Putative uncharacterized protein At1g22170
           OS=Arabidopsis thaliana GN=At1g22170 PE=2 SV=1
          Length = 334

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 29/98 (29%), Positives = 43/98 (43%)
 Frame = +1

Query: 391 MASFTACRPVAGFLSRDSQQSTNEASQRNRLASQTKCGWKFSQGVRAFVXXXXXXCQKKR 570
           MA+ T+ + V  F S  S  S+          + ++CG+K    + +F       C+ K 
Sbjct: 1   MATATSHQSVVSFASLRSSPSS----------TISQCGFKIDSSL-SFTSKKTNFCKIKA 49

Query: 571 SWDLVLASASPASPPLEKPATPAKSTSEAALILIRHGE 684
               V    +  SP    P    K ++EAALILIR GE
Sbjct: 50  MASSVSYDNTLLSPSKTIPDNSQKKSNEAALILIRRGE 87


>tr|Q6Z8J0|Q6Z8J0_ORYSJ Os02g0751800 protein OS=Oryza sativa subsp.
           japonica GN=P0431B06.40 PE=2 SV=1
          Length = 332

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +1

Query: 556 CQKKRSWDLVLASASPAS--PPLEKPATPA-----KSTSEAALILIRHGE 684
           C   R   LV AS S +S   P + P +P      K +SE+ALILIRHGE
Sbjct: 40  CSGTRKLGLVCASNSHSSVMEPAQLPLSPESGNTPKKSSESALILIRHGE 89


>tr|B8AIS1|B8AIS1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08962 PE=4 SV=1
          Length = 877

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +1

Query: 556 CQKKRSWDLVLASASPAS--PPLEKPATPA-----KSTSEAALILIRHGE 684
           C   R   LV AS S +S   P + P +P      K +SE+ALILIRHGE
Sbjct: 40  CSGTRKLGLVCASNSHSSVMEPAQLPLSPESGNTPKKSSESALILIRHGE 89


>tr|A3ABF0|A3ABF0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008122 PE=3 SV=1
          Length = 922

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +1

Query: 556 CQKKRSWDLVLASASPAS--PPLEKPATPA-----KSTSEAALILIRHGE 684
           C   R   LV AS S +S   P + P +P      K +SE+ALILIRHGE
Sbjct: 40  CSGTRKLGLVCASNSHSSVMEPAQLPLSPESGNTPKKSSESALILIRHGE 89