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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960888
Clone id TST39A01NGRL0008_K01
Library
Length 643
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_K01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AATATTTGCGTCATTCTTCCCGCCATCGCTGGTCATCTGAAGGGCAGATATGTTGTGGGT
AGACAAATACCGTCCCCATGCGCTCGACAAGGTGATGGTGCACGTCGAAGAGGCTCAGCA
ACTCAAGCAGCTGGTAGCTCAGGGTGATTGCCCTCACCTTCTCTTCTATGGGCCGTCAGG
GGCGGGCAAAAAGACTCTTATCATTGCCCTGCTCCGTGAGATGTATGGTGCTGGAGCTGA
GAAGATAAAAGTAGAGAATAAACCCTGGAAAATAGAGGCAGGTACACGCAAACTGGAAGT
AGAACTGACTACAATCTCAAGCAACTATCATGTGGAGTTAAATCCGAGTGACGCTGGTTT
TCAAGATAGATATGTTGTGCAAGAGATTATCAAGGAGATGGCCAAGAGCAGGCCACTTGA
TGTTGCTGGCAACAAGAGCTTCAAAGTACTCGTTTTGAATGAAGTTGATAGACTCTCGAA
AGAGGCGCAACATTCTCTTCGCCGTACTATGGAAAAGTACAGTTCAGCTTGTAGGCTAAT
TTTGTGCTGCAACAGTGCCTCGAAGGTCATTGAAGCAGTTCGTTCGCGTTGCTTGAACAT
TCGAATAAGTGCACCATCTAAAGAGGAGATTGTGAAAGTGCTT
■■Homology search results ■■ -
sp_hit_id Q54BN3
Definition sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum
Align length 198
Score (bit) 236.0
E-value 8.0e-62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960888|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_K01, 5'
         (643 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=...   236   8e-62
sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos tauru...   236   1e-61
sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus muscu...   235   1e-61
sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapi...   234   4e-61
sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospor...   198   2e-50
sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosac...   195   2e-49
sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharom...   171   3e-42
sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subuni...   138   2e-32
sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Metha...   127   6e-29
sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archa...   125   1e-28
sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncul...   125   2e-28
sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Metha...   122   2e-27
sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Metha...   122   2e-27
sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Metha...   121   3e-27
sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Metha...   121   4e-27
sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aerop...   120   6e-27
sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staph...   119   1e-26
sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Metha...   119   2e-26
sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Metha...   118   2e-26
sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfo...   118   3e-26
sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picro...   118   3e-26
sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Metha...   117   4e-26
sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Metha...   117   7e-26
sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Metha...   117   7e-26
sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Metha...   116   9e-26
sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Py...   116   9e-26
sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Py...   116   1e-25
sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natro...   115   2e-25
sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Py...   115   2e-25
sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Py...   114   3e-25

>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3
           OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1
          Length = 347

 Score =  236 bits (602), Expect = 8e-62
 Identities = 110/198 (55%), Positives = 157/198 (79%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLW+DKY+P +LDK+  H + +  LK ++  GD PHLL YGPSGAGKKT I+A+L+E+YG
Sbjct: 1   MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
             A K+K++++ +K    ++ +++  TTISS+YH+E+NP +AG  DR V+Q IIKE+A+S
Sbjct: 61  PNALKLKIDHRTFKHPTSSKNIQI--TTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
            P+D     +FK+++LNEVD+LSK+AQH+LRRTMEKY++ CRLILCC+S +KVI+ ++SR
Sbjct: 119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178

Query: 590 CLNIRISAPSKEEIVKVL 643
           CL IR+ APS+EEI KVL
Sbjct: 179 CLGIRVPAPSQEEIEKVL 196


>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus
           GN=RFC3 PE=2 SV=1
          Length = 356

 Score =  236 bits (601), Expect = 1e-61
 Identities = 114/197 (57%), Positives = 153/197 (77%)
 Frame = +2

Query: 53  LWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGA 232
           LWVDKYRP +L ++  H E+A QL+ LV  GD PHLL YGPSGAGKKT I+ +LRE+YG 
Sbjct: 3   LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 233 GAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSR 412
           G EK+++E++     +   K ++E++TI+SNYH+E+NPSDAG  DR V+QE++K +A+S+
Sbjct: 63  GVEKLRIEHQTITTPS---KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 413 PLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRC 592
            L+ +  K FKV++L EVD+L+K+AQH+LRRTMEKY S CRLILCCNS SKVI  +RSRC
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 593 LNIRISAPSKEEIVKVL 643
           L +R+ APS E+I  VL
Sbjct: 180 LAVRVPAPSIEDICHVL 196


>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus
           GN=Rfc3 PE=2 SV=1
          Length = 356

 Score =  235 bits (600), Expect = 1e-61
 Identities = 113/197 (57%), Positives = 153/197 (77%)
 Frame = +2

Query: 53  LWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGA 232
           LWVDKYRP +L ++  H E+A QL+ LV  GD PHLL YGPSGAGKKT I+ +LRE+YG 
Sbjct: 3   LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query: 233 GAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSR 412
           G EK+++E++     +   K ++E++TI+SNYH+E+NPSDAG  DR V+QE++K +A+S+
Sbjct: 63  GVEKLRIEHQTITTPS---KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 413 PLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRC 592
            L+ +  + FKV++L EVD+L+K+AQH+LRRTMEKY S CRLILCCNS SKVI  +RSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 593 LNIRISAPSKEEIVKVL 643
           L +R+ APS E+I  VL
Sbjct: 180 LAVRVPAPSIEDICSVL 196


>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens
           GN=RFC3 PE=1 SV=2
          Length = 356

 Score =  234 bits (596), Expect = 4e-61
 Identities = 113/197 (57%), Positives = 152/197 (77%)
 Frame = +2

Query: 53  LWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGA 232
           LWVDKYRP +L ++  H E+A QL+ LV  GD PHLL YGPSGAGKKT I+ +LRE+YG 
Sbjct: 3   LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 233 GAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSR 412
           G EK+++E++     +   K ++E++TI+SNYH+E+NPSDAG  DR V+QE++K +A+S+
Sbjct: 63  GVEKLRIEHQTITTPS---KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 413 PLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRC 592
            L+    + FKV++L EVD+L+K+AQH+LRRTMEKY S CRLILCCNS SKVI  +RSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 593 LNIRISAPSKEEIVKVL 643
           L +R+ APS E+I  VL
Sbjct: 180 LAVRVPAPSIEDICHVL 196


>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora
           crassa GN=B14D6.460 PE=3 SV=1
          Length = 352

 Score =  198 bits (504), Expect = 2e-50
 Identities = 98/197 (49%), Positives = 144/197 (73%)
 Frame = +2

Query: 53  LWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGA 232
           L VDK+RP +LD +  H E +++L+ L   GD PHLL YGPSGAGKKT I+A L+E+YG 
Sbjct: 3   LIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62

Query: 233 GAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSR 412
           G EKIK++ + ++  +  RKLE  +  ++S YH+E+ PSD G  DR VVQ+++KE+A+++
Sbjct: 63  GVEKIKIDARVFQTSSN-RKLEFNI--VASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119

Query: 413 PLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRC 592
            +D++  + FKV+V+NE D L+++AQ +LRRTMEKYS   RLIL  NS + +I  +RSRC
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRC 179

Query: 593 LNIRISAPSKEEIVKVL 643
           L +R++AP+ +EI  VL
Sbjct: 180 LLVRVAAPTHKEICDVL 196


>sp|O94697|RFC5_SCHPO Replication factor C subunit 5
           OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1
          Length = 358

 Score =  195 bits (495), Expect = 2e-49
 Identities = 93/198 (46%), Positives = 146/198 (73%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLW+D+YRP  L  +  H + +++L  L +  + PHLL YGPSGAGKKT ++A+LRE+YG
Sbjct: 1   MLWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
            G+EK+K++ + + +   ++KL++ +  +SS +H+E+ PSD G  DR ++QE++K++A+S
Sbjct: 61  PGSEKLKIDQRTF-LTPSSKKLQINI--VSSLHHLEITPSDVGNYDRVIMQELLKDVAQS 117

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
             +D+   K FKV+V+N  D L+++AQ +LRRTMEKYS+  RLIL  NS SK+IE +RSR
Sbjct: 118 AQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSR 177

Query: 590 CLNIRISAPSKEEIVKVL 643
            L +R++AP+ EEI+ V+
Sbjct: 178 TLMVRVAAPTPEEIILVM 195


>sp|P38251|RFC5_YEAST Replication factor C subunit 5
           OS=Saccharomyces cerevisiae GN=RFC5 PE=1 SV=1
          Length = 354

 Score =  171 bits (433), Expect = 3e-42
 Identities = 93/203 (45%), Positives = 132/203 (65%), Gaps = 6/203 (2%)
 Frame = +2

Query: 53  LWVDKYRPHALDKVMVHVEEAQQLKQLVAQG-DCPHLLFYGPSGAGKKTLIIALLREMYG 229
           LWVDKYRP +L+ +  + E    LK L  Q  D PHLL YGP+G GKKT  +ALL  ++G
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
            G  ++K++ + + + A  RKLE  L  +SS YH+E+ PSD G  DR V+QE++KE+A+ 
Sbjct: 63  PGVYRLKIDVRQF-VTASNRKLE--LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119

Query: 410 RPLDVAGNKS-----FKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIE 574
             +D   +K      +K +++NE + L+K+AQ +LRRTMEKYS   RLI+ C+S S +I 
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179

Query: 575 AVRSRCLNIRISAPSKEEIVKVL 643
            ++SRCL IR  APS  EI  +L
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTIL 202


>sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subunit
           L478 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L478
           PE=3 SV=1
          Length = 370

 Score =  138 bits (348), Expect = 2e-32
 Identities = 70/199 (35%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           M + +KYRP      + + +  +QLK L +  D PH++  GPSG+GKKTL+  LL  +Y 
Sbjct: 1   MFFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYD 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
                ++   + + I   + K E+E+  + SNYH+ + P+     D+Y++QEIIK+ A  
Sbjct: 61  EDVNILR--KRKYNINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAMH 115

Query: 410 RPLDVAGNK-SFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRS 586
           +  D+   K  FK +V++ ++ L+  +Q +LRRTME+Y+  CR I+ CN+ SK+++ +RS
Sbjct: 116 KSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRS 175

Query: 587 RCLNIRISAPSKEEIVKVL 643
           RC    +  P+ E I  V+
Sbjct: 176 RCRTFCVPLPTIENINTVV 194


>sp|A6US36|RFCS_METVS Replication factor C small subunit
           OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM
           1224) GN=rfcS PE=3 SV=1
          Length = 315

 Score =  127 bits (318), Expect = 6e-29
 Identities = 76/196 (38%), Positives = 109/196 (55%)
 Frame = +2

Query: 56  WVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAG 235
           WV+KYRP  LD+V+ H E  ++LK  V +   PHLLF G  G GK T  + L +++YG  
Sbjct: 5   WVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG-- 62

Query: 236 AEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRP 415
                     WK                 N+ +ELN SD    D  V++  +K+ A+++P
Sbjct: 63  --------NTWK----------------ENF-LELNSSDERGID--VIRTKVKDFARTKP 95

Query: 416 LDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCL 595
           +   G+  FKV+ L+E D L+ +AQ++LRRTMEKYS  CR +L CN  SK+I  ++SRC 
Sbjct: 96  I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCA 152

Query: 596 NIRISAPSKEEIVKVL 643
             R S    E++VK L
Sbjct: 153 IFRFSPLKTEDLVKNL 168


>sp|O28219|RFCS_ARCFU Replication factor C small subunit
           OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1
          Length = 319

 Score =  125 bits (315), Expect = 1e-28
 Identities = 78/197 (39%), Positives = 108/197 (54%)
 Frame = +2

Query: 53  LWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGA 232
           +WV+KYRP  LD+V+   E  Q+LK  V + + PHLLF GP G GK    IAL R+++G 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64

Query: 233 GAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSR 412
                  EN  W+                 +  +E+N SD    D  VV+  IKE A++ 
Sbjct: 65  -------EN--WR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96

Query: 413 PLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRC 592
           P+   G   FK++ L+E D L+ +AQ +LRRTME YS +CR IL CN  S++IE ++SRC
Sbjct: 97  PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153

Query: 593 LNIRISAPSKEEIVKVL 643
              R     KE + K L
Sbjct: 154 AVFRFKPVPKEAMKKRL 170
tr_hit_id A9SKH1
Definition tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 198
Score (bit) 351.0
E-value 2.0e-95
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960888|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_K01, 5'
         (643 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella paten...   351   2e-95
tr|Q8VXX4|Q8VXX4_ARATH Putative replication factor C OS=Arabidop...   318   1e-85
tr|Q84N07|Q84N07_ORYSJ Replication factor C 38 kDa subunit OS=Or...   315   1e-84
tr|Q852K3|Q852K3_ORYSJ Os03g0792600 protein OS=Oryza sativa subs...   314   3e-84
tr|A3ANI3|A3ANI3_ORYSJ Putative uncharacterized protein OS=Oryza...   314   3e-84
tr|A2XMT5|A2XMT5_ORYSI Putative uncharacterized protein OS=Oryza...   314   3e-84
tr|B6T5I0|B6T5I0_MAIZE Replication factor C subunit 5 OS=Zea may...   313   7e-84
tr|B4FER3|B4FER3_MAIZE Putative uncharacterized protein OS=Zea m...   311   2e-83
tr|B7FHM5|B7FHM5_MEDTR Putative uncharacterized protein OS=Medic...   311   3e-83
tr|A7PZY4|A7PZY4_VITVI Chromosome chr8 scaffold_41, whole genome...   300   5e-80
tr|A8J3U8|A8J3U8_CHLRE DNA replication factor C complex subunit ...   285   2e-75
tr|A4RWV3|A4RWV3_OSTLU Predicted protein OS=Ostreococcus lucimar...   258   3e-67
tr|Q01A06|Q01A06_OSTTA Putative replication factor (ISS) OS=Ostr...   256   8e-67
tr|B6N1Z4|B6N1Z4_BRAFL Putative uncharacterized protein OS=Branc...   243   6e-63
tr|B6KYC6|B6KYC6_BRAFL Putative uncharacterized protein OS=Branc...   243   6e-63
tr|B3RWK4|B3RWK4_TRIAD Putative uncharacterized protein OS=Trich...   242   1e-62
tr|Q5ZJP0|Q5ZJP0_CHICK Putative uncharacterized protein OS=Gallu...   238   2e-61
tr|Q8AW06|Q8AW06_DANRE Replication factor C (Activator 1) 3 OS=D...   238   3e-61
tr|Q4QQP4|Q4QQP4_XENLA MGC115007 protein OS=Xenopus laevis GN=rf...   238   3e-61
tr|A7MCR5|A7MCR5_DANRE Replication factor C (Activator 1) 3 OS=D...   238   3e-61
tr|Q5M830|Q5M830_RAT Replication factor C (Activator 1) 3 OS=Rat...   236   9e-61
tr|Q8BY26|Q8BY26_MOUSE Putative uncharacterized protein OS=Mus m...   235   2e-60
tr|Q3TKD1|Q3TKD1_MOUSE Putative uncharacterized protein OS=Mus m...   235   2e-60
tr|Q4R5E8|Q4R5E8_MACFA Brain cDNA, clone: QnpA-15666, similar to...   234   4e-60
tr|Q5W0E8|Q5W0E8_HUMAN Replication factor C (Activator 1) 3, 38k...   234   4e-60
tr|Q5U0C2|Q5U0C2_HUMAN Replication factor C (Activator 1) 3, 38k...   234   4e-60
tr|A8MX32|A8MX32_HUMAN Putative uncharacterized protein RFC3 OS=...   234   4e-60
tr|A7S695|A7S695_NEMVE Predicted protein OS=Nematostella vectens...   233   8e-60
tr|B4DKE6|B4DKE6_HUMAN cDNA FLJ60629, highly similar to Replicat...   233   8e-60
tr|Q53HK8|Q53HK8_HUMAN Replication factor C 3 isoform 1 variant ...   233   1e-59

>tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185915 PE=4 SV=1
          Length = 354

 Score =  351 bits (901), Expect = 2e-95
 Identities = 168/198 (84%), Positives = 189/198 (95%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLWVDKYRP  LDKVMVH EEA  LK L+AQGDCPHLLFYGPSGAGKKTLI+ALLREM+G
Sbjct: 1   MLWVDKYRPRTLDKVMVHKEEATNLKNLIAQGDCPHLLFYGPSGAGKKTLIMALLREMFG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
           + AEK+KVENKPWK+EAGTRK+EVELTT+SSN+HVELNPSDAGFQDRYVVQEIIK+MAK+
Sbjct: 61  SSAEKVKVENKPWKVEAGTRKIEVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKDMAKN 120

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
           RPLDVAGN+ FKVLVLNEVD+LSKEAQHSLRRTMEKYS+ACRL+LCCNSASKVIEAVRSR
Sbjct: 121 RPLDVAGNRGFKVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLLLCCNSASKVIEAVRSR 180

Query: 590 CLNIRISAPSKEEIVKVL 643
           C+NIRI++PS+++IV VL
Sbjct: 181 CVNIRINSPSRDDIVDVL 198


>tr|Q8VXX4|Q8VXX4_ARATH Putative replication factor C OS=Arabidopsis
           thaliana GN=At5g27740 PE=2 SV=1
          Length = 354

 Score =  318 bits (816), Expect = 1e-85
 Identities = 149/198 (75%), Positives = 183/198 (92%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLWVDKYRP +LDKV+VH + AQ+LK+LV++ DCPHLLFYGPSG+GKKTLI+ALL+++YG
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
           A AEK+KVEN+ WK++AG+R +++ELTT+SS  HVEL PSDAGFQDRY+VQEIIKEMAK+
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
           RP+D  G K +KVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EA++SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 590 CLNIRISAPSKEEIVKVL 643
           CLN+RI+APS+EEIVKVL
Sbjct: 181 CLNVRINAPSQEEIVKVL 198


>tr|Q84N07|Q84N07_ORYSJ Replication factor C 38 kDa subunit OS=Oryza
           sativa subsp. japonica GN=OsRFC5 PE=2 SV=1
          Length = 354

 Score =  315 bits (808), Expect = 1e-84
 Identities = 145/198 (73%), Positives = 182/198 (91%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLWVDKYRP  LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+G
Sbjct: 1   MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
           AGA+K+K+ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61  AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
           RP+DV G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDVKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 590 CLNIRISAPSKEEIVKVL 643
           CLN+R++APS+++IV+VL
Sbjct: 181 CLNVRVNAPSEDQIVQVL 198


>tr|Q852K3|Q852K3_ORYSJ Os03g0792600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0060J21.20 PE=2 SV=1
          Length = 354

 Score =  314 bits (804), Expect = 3e-84
 Identities = 144/198 (72%), Positives = 181/198 (91%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLWVDKYRP  LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+G
Sbjct: 1   MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
           AGA+K+K+ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61  AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
           RP+D  G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 590 CLNIRISAPSKEEIVKVL 643
           CLN+R++APS+++IV+VL
Sbjct: 181 CLNVRVNAPSEDQIVQVL 198


>tr|A3ANI3|A3ANI3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012355 PE=4 SV=1
          Length = 418

 Score =  314 bits (804), Expect = 3e-84
 Identities = 144/198 (72%), Positives = 181/198 (91%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLWVDKYRP  LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+G
Sbjct: 65  MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 124

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
           AGA+K+K+ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+
Sbjct: 125 AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 184

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
           RP+D  G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSR
Sbjct: 185 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 244

Query: 590 CLNIRISAPSKEEIVKVL 643
           CLN+R++APS+++IV+VL
Sbjct: 245 CLNVRVNAPSEDQIVQVL 262


>tr|A2XMT5|A2XMT5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13856 PE=4 SV=1
          Length = 354

 Score =  314 bits (804), Expect = 3e-84
 Identities = 144/198 (72%), Positives = 181/198 (91%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLWVDKYRP  LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+G
Sbjct: 1   MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
           AGA+K+K+ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61  AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
           RP+D  G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 590 CLNIRISAPSKEEIVKVL 643
           CLN+R++APS+++IV+VL
Sbjct: 181 CLNVRVNAPSEDQIVQVL 198


>tr|B6T5I0|B6T5I0_MAIZE Replication factor C subunit 5 OS=Zea mays
           PE=2 SV=1
          Length = 354

 Score =  313 bits (801), Expect = 7e-84
 Identities = 145/198 (73%), Positives = 179/198 (90%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLWVDKYRP  LDKV VH + AQ L++ V++ DCPHLLFYGPSG+GKKTLI+AL+++M+G
Sbjct: 1   MLWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
           AGAEK+K+ENK WKI+ GTR LE+EL  +SS +HVE+ PSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61  AGAEKVKLENKTWKIDTGTRTLEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKN 120

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
           RP+D  G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSR 180

Query: 590 CLNIRISAPSKEEIVKVL 643
           CLN+R++APS+++IV+VL
Sbjct: 181 CLNVRVNAPSEDQIVQVL 198


>tr|B4FER3|B4FER3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 354

 Score =  311 bits (797), Expect = 2e-83
 Identities = 144/198 (72%), Positives = 178/198 (89%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLWVDKYRP  LDKV VH + AQ L++ V++ DCPHLLFYGPSG+GKKTLI+AL+++M+G
Sbjct: 1   MLWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
           AGAEK+K+ENK WKI+ GTR  E+EL  +SS +HVE+ PSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61  AGAEKVKLENKTWKIDTGTRTFEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKN 120

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
           RP+D  G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSR 180

Query: 590 CLNIRISAPSKEEIVKVL 643
           CLN+R++APS+++IV+VL
Sbjct: 181 CLNVRVNAPSEDQIVQVL 198


>tr|B7FHM5|B7FHM5_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 262

 Score =  311 bits (796), Expect = 3e-83
 Identities = 144/198 (72%), Positives = 177/198 (89%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLWVDKYRP  LD  MVH + AQ LK+LV + DCPHLLFYGPSGAGKKTLI+ALLR+M+G
Sbjct: 1   MLWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
            GAEK+KVEN+ WK++AG+R +++ELTT+SS  H+E+ PSDAGFQDRY+VQEIIKEMAK+
Sbjct: 61  PGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
           RP+D  G K FKVLVLN+VD+LS+EAQHSLRRTMEKYS+ CRL+LCCNS+S+V EA+RSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSR 180

Query: 590 CLNIRISAPSKEEIVKVL 643
           CLN+RI+APS+E+IV+VL
Sbjct: 181 CLNVRINAPSEEQIVEVL 198


>tr|A7PZY4|A7PZY4_VITVI Chromosome chr8 scaffold_41, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027060001
           PE=4 SV=1
          Length = 354

 Score =  300 bits (768), Expect = 5e-80
 Identities = 142/198 (71%), Positives = 173/198 (87%)
 Frame = +2

Query: 50  MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 229
           MLWVDKYRP  LD ++VH + AQ LK+LV + DCPHLLFYGP G+GKKTLI+A+LR+++G
Sbjct: 1   MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQIFG 60

Query: 230 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 409
                + VENK WKI+AGTR +++ELTT+SS +H+ELNP DAGFQDRY+VQEIIKEMAK+
Sbjct: 61  KFLFILSVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKN 120

Query: 410 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 589
           RP+D  G K F+VLVLNEVDRLS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 590 CLNIRISAPSKEEIVKVL 643
           CLNIRI+AP++E+I KVL
Sbjct: 181 CLNIRINAPTEEQITKVL 198