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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960899
Clone id TST39A01NGRL0008_K13
Library
Length 271
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_K13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AAACCATACCAATAGAAATAAAGAGAGCTCACAGCGTAGCCCGTTTGCAACCGCTTCTGC
ACGCTGAGCTCCTTCTGATCTTCGTCCTAGATTCGTCAGCACAATACCGATGCTCTCCGC
TCTCTACGGCTCCTGACCAATACAATATGACAAAACAAGCACTTCCCGATTTTCCCCTTG
AAAGGGATAGACTCCGACAAGCAAGACGGCCACATATCTTTTCCTCACTGCAGACCCATG
AATACTCCTGTCCCTCATGCTCCACCTACTG
■■Homology search results ■■ -
sp_hit_id P70298
Definition sp|P70298|CUX2_MOUSE Homeobox protein cut-like 2 OS=Mus musculus
Align length 34
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960899|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_K13, 5'
         (271 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70298|CUX2_MOUSE Homeobox protein cut-like 2 OS=Mus musculus...    30   4.9  
sp|Q1GJQ5|G6PI_SILST Glucose-6-phosphate isomerase OS=Silicibact...    29   8.4  
sp|Q823J9|AMPA_CHLCV Probable cytosol aminopeptidase OS=Chlamydo...    29   8.4  

>sp|P70298|CUX2_MOUSE Homeobox protein cut-like 2 OS=Mus musculus
           GN=Cux2 PE=2 SV=1
          Length = 1426

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/34 (32%), Positives = 24/34 (70%)
 Frame = -2

Query: 123 RAESIGIVLTNLGRRSEGAQRAEAVANGLRCELS 22
           +A+ +G+++TNL + ++ A+ A+    GLR +L+
Sbjct: 172 KADEVGLIMTNLEKANQRAEAAQREVEGLREQLA 205


>sp|Q1GJQ5|G6PI_SILST Glucose-6-phosphate isomerase OS=Silicibacter
           sp. (strain TM1040) GN=pgi PE=3 SV=1
          Length = 536

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 184 GIDSDKQDGHISFPHCRPMNT 246
           G+D+D+  GH+SFP  RP  T
Sbjct: 442 GVDADRMAGHLSFPGNRPSVT 462


>sp|Q823J9|AMPA_CHLCV Probable cytosol aminopeptidase
           OS=Chlamydophila caviae GN=pepA PE=3 SV=1
          Length = 499

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -2

Query: 264 WSMRDRSIHGSAVRKRYVAVLLVGVYPFQGENREVLVLSYCIGQEP*RAESIGIVLTNLG 85
           W ++D+    +++ K Y ++  V +  F  ++REV  L Y  GQ     +   IVL  LG
Sbjct: 24  WKLKDKVKCAASIAKEYESLYQVALDNFSAKSREV-ELIYSCGQ----GKEKRIVLLGLG 78

Query: 84  RRSE 73
           +  E
Sbjct: 79  KNEE 82
tr_hit_id B6TEN8
Definition tr|B6TEN8|B6TEN8_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 31
Score (bit) 34.7
E-value 0.061
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960899|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_K13, 5'
         (271 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6TEN8|B6TEN8_MAIZE Putative uncharacterized protein OS=Zea m...    35   0.061
tr|B6U119|B6U119_MAIZE Putative uncharacterized protein OS=Zea m...    35   0.061
tr|B6SN44|B6SN44_MAIZE Putative uncharacterized protein OS=Zea m...    35   0.061
tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea m...    35   0.061
tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subs...    32   0.28 
tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza...    32   0.28 
tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella paten...    35   0.65 
tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella paten...    35   0.66 
tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Popul...    33   1.0  
tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genom...    33   1.3  
tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome ...    33   1.8  
tr|Q9LV56|Q9LV56_ARATH Gb|AAD25142.1 (Putative uncharacterized p...    34   3.2  
tr|Q6DFC7|Q6DFC7_XENLA LOC445830 protein (Fragment) OS=Xenopus l...    33   7.0  
tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacteriz...    33   7.0  

>tr|B6TEN8|B6TEN8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 145

 Score = 34.7 bits (78), Expect(2) = 0.061
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 129 APDQYNMTKQALPDFPLERDRLRQARRPHIF 221
           APD+  +TK++  DFP+E +R +  RRP IF
Sbjct: 57  APDEEKITKRSPLDFPIEWERPKPGRRPDIF 87



 Score = 24.6 bits (52), Expect(2) = 0.061
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 FPHCRPMNTPVPHAPP 267
           FP   PM TP+PH  P
Sbjct: 87  FPKFSPMKTPLPHPLP 102


>tr|B6U119|B6U119_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 140

 Score = 34.7 bits (78), Expect(2) = 0.061
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 129 APDQYNMTKQALPDFPLERDRLRQARRPHIF 221
           APD+  +TK++  DFP+E +R +  RRP IF
Sbjct: 53  APDEEKITKRSPLDFPIEWERPKPGRRPDIF 83



 Score = 24.6 bits (52), Expect(2) = 0.061
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 FPHCRPMNTPVPHAPP 267
           FP   PM TP+PH  P
Sbjct: 83  FPKFSPMKTPLPHPLP 98


>tr|B6SN44|B6SN44_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 141

 Score = 34.7 bits (78), Expect(2) = 0.061
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 129 APDQYNMTKQALPDFPLERDRLRQARRPHIF 221
           APD+  +TK++  DFP+E +R +  RRP IF
Sbjct: 53  APDEEKITKRSPLDFPIEWERPKPGRRPDIF 83



 Score = 24.6 bits (52), Expect(2) = 0.061
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 FPHCRPMNTPVPHAPP 267
           FP   PM TP+PH  P
Sbjct: 83  FPKFSPMKTPLPHPLP 98


>tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 131

 Score = 34.7 bits (78), Expect(2) = 0.061
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 129 APDQYNMTKQALPDFPLERDRLRQARRPHIF 221
           APD+  +TK++  DFP+E +R +  RRP IF
Sbjct: 44  APDEEKITKRSPLDFPIEWERPKPGRRPDIF 74



 Score = 24.6 bits (52), Expect(2) = 0.061
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 FPHCRPMNTPVPHAPP 267
           FP   PM TP+PH  P
Sbjct: 74  FPKFSPMKTPLPHPLP 89


>tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subsp.
           japonica GN=OJ2055_H10.18 PE=2 SV=1
          Length = 144

 Score = 32.3 bits (72), Expect(2) = 0.28
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 129 APDQYNMTKQALPDFPLERDRLRQARRPHIF 221
           APD+  +T+++  DFP+E ++ +  RRP IF
Sbjct: 57  APDEEKITRRSPLDFPIEWEKPKPGRRPDIF 87



 Score = 24.6 bits (52), Expect(2) = 0.28
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 FPHCRPMNTPVPHAPP 267
           FP   PM TP+PH  P
Sbjct: 87  FPKFSPMKTPLPHPLP 102


>tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08059 PE=4 SV=1
          Length = 144

 Score = 32.3 bits (72), Expect(2) = 0.28
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 129 APDQYNMTKQALPDFPLERDRLRQARRPHIF 221
           APD+  +T+++  DFP+E ++ +  RRP IF
Sbjct: 57  APDEEKITRRSPLDFPIEWEKPKPGRRPDIF 87



 Score = 24.6 bits (52), Expect(2) = 0.28
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 FPHCRPMNTPVPHAPP 267
           FP   PM TP+PH  P
Sbjct: 87  FPKFSPMKTPLPHPLP 102


>tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65594 PE=4 SV=1
          Length = 79

 Score = 34.7 bits (78), Expect(2) = 0.65
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +3

Query: 129 APDQYNMTKQALPDFPLERDRLRQARRPHIF 221
           APD+  MT+++  DFP+E DR R  RR  IF
Sbjct: 2   APDEEKMTRRSPLDFPIEWDRPRPGRRADIF 32



 Score = 21.2 bits (43), Expect(2) = 0.65
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 FPHCRPMNTPVPHAPP 267
           FP   PM TP+P  PP
Sbjct: 32  FPQFSPMKTPLP--PP 45


>tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_56105 PE=4 SV=1
          Length = 78

 Score = 34.7 bits (78), Expect(2) = 0.66
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +3

Query: 129 APDQYNMTKQALPDFPLERDRLRQARRPHIF 221
           APD+  MT+++  DFP+E DR R  RR  IF
Sbjct: 2   APDEEKMTRRSPLDFPIEWDRPRPGRRADIF 32



 Score = 21.2 bits (43), Expect(2) = 0.66
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 FPHCRPMNTPVPHAPP 267
           FP   PM TP+P  PP
Sbjct: 32  FPQFSPMKTPLP--PP 45


>tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 147

 Score = 33.1 bits (74), Expect(2) = 1.0
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 120 LSTAPDQYNMTKQALPDFPLERDRLRQARRPHIF 221
           +S APD+  +T+++  DFP+E +R +   RP IF
Sbjct: 64  VSMAPDEEKLTRRSPLDFPIEWERPKPGSRPDIF 97



 Score = 21.9 bits (45), Expect(2) = 1.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 FPHCRPMNTPVPHAPP 267
           FP   PM TP+P  PP
Sbjct: 97  FPQFSPMKTPIP--PP 110


>tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016751001
           PE=4 SV=1
          Length = 147

 Score = 33.5 bits (75), Expect(2) = 1.3
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 120 LSTAPDQYNMTKQALPDFPLERDRLRQARRPHIF 221
           LS AP++  +T++   DFP+E +R +  RRP IF
Sbjct: 63  LSMAPEEEKLTRRNPLDFPIEWNRPKPGRRPDIF 96



 Score = 21.2 bits (43), Expect(2) = 1.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 FPHCRPMNTPVPHAPP 267
           FP   PM TP+P  PP
Sbjct: 96  FPQFSPMKTPLP--PP 109