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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960911
Clone id TST39A01NGRL0008_L02
Library
Length 656
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_L02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GACAGTCAGGTCATTTGAGAAATTTGAGAAGTGAGGCTGAAGTCCTGGACTATTTGGAGT
CTCTCAAGGATCAGCATTTGACCATTCAAGTCGTCGAATGGATTGTTCAAGAGTCCAGAC
TGAAGCAGTATGACATCGCTCTAATCTTCTTAGGTAACCGTCTCCTACAGATTACAGGAA
ACACACCAGAGGATTTGTACGAAAGACTTGAGGAGAAGTCACAATGCATACAAGAAGAGG
AGGATATTGAAGACATGGCTGTACGAGGAAGTCCCTTGAAGGCAAGCTTTAATATAAAGA
AAGTGGTTGCTTGGCTAGCTCACGACAAGAGGAATACCTGCGCCGACACTTCTTCATTGA
GTATTTTGAGGAGGTTCAAAGAGGAGGTCCTTGTGATCTCAAGCAAGTATCAGAGTCCTT
GTGCCTCCCACCGGCGAGAAGGGAATGGGTTCGCCACTTGGCAAGAGCAAAAGCAGCATT
TGGGGGATCTACTTCATGCAGACAATCCAAGGTTTTCTCAATTCCTACCCATAATCTCAT
TTTTGTCCAAGAAGCCCCACTTGGATTGTGTCACACCGGGAAGTGTTGATCCTGACTTGT
CAATGTTCGACAAGAAGTGGGATAGATGGCTCATGAAATACCCCATTATAAATCAT
■■Homology search results ■■ -
sp_hit_id O43895
Definition sp|O43895|XPP2_HUMAN Xaa-Pro aminopeptidase 2 OS=Homo sapiens
Align length 44
Score (bit) 31.6
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960911|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_L02, 5'
         (656 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43895|XPP2_HUMAN Xaa-Pro aminopeptidase 2 OS=Homo sapiens GN...    32   3.8  
sp|Q86YC2|PALB2_HUMAN Partner and localizer of BRCA2 OS=Homo sap...    32   3.8  
sp|O52069|FLIF_BRUAB Flagellar M-ring protein OS=Brucella abortu...    32   3.8  
sp|Q9LHD9|U496C_ARATH UPF0496 protein At3g28270 OS=Arabidopsis t...    31   6.5  
sp|Q14190|SIM2_HUMAN Single-minded homolog 2 OS=Homo sapiens GN=...    31   6.5  
sp|Q5DTN8|JKIP3_MOUSE Janus kinase and microtubule-interacting p...    31   6.5  
sp|Q61079|SIM2_MOUSE Single-minded homolog 2 OS=Mus musculus GN=...    30   8.5  
sp|Q8FUS3|FLIF_BRUSU Flagellar M-ring protein FliF OS=Brucella s...    30   8.5  

>sp|O43895|XPP2_HUMAN Xaa-Pro aminopeptidase 2 OS=Homo sapiens
           GN=XPNPEP2 PE=2 SV=3
          Length = 674

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 555 ASWTKMRLWVGIEKTLDCLHEVDPPNAAFALAKWRTHSLLAGGR 424
           A WT  R W   E+ +DC  E+        +  W    + AGGR
Sbjct: 110 AVWTDSRYWTQAERQMDCNWELHKEVGTTPIVTWLLTEIPAGGR 153


>sp|Q86YC2|PALB2_HUMAN Partner and localizer of BRCA2 OS=Homo
           sapiens GN=PALB2 PE=1 SV=1
          Length = 1186

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = +3

Query: 234 EEEDIEDMAVRGSPLKASFNIKKVVAWLAHDKRNTCADTSSLSILRRFKEEVLVISSKYQ 413
           E+ D+   AV  +P +     +K     A D       TSSLSI+ R KEE  V S KYQ
Sbjct: 495 EDNDLSRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVNRSKEE--VTSHKYQ 552


>sp|O52069|FLIF_BRUAB Flagellar M-ring protein OS=Brucella abortus
           GN=fliF PE=3 SV=3
          Length = 580

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 18  RNLRSEAEVLDYLESLKDQHLTIQVVEWIVQESRLKQYDIALIFLGNRLLQITGNTP 188
           RN  S  E +D  E L +  +  + V  +     +K+  IA++    RLLQ  G TP
Sbjct: 327 RNGESSTEKMDRREELTNYEVNSKTVSTVSDGYSIKRLSIAVVIDQARLLQTAGTTP 383


>sp|Q9LHD9|U496C_ARATH UPF0496 protein At3g28270 OS=Arabidopsis
           thaliana GN=At3g28270 PE=2 SV=1
          Length = 374

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +3

Query: 402 SKYQSPCASHRREGNGFATWQEQKQHLGDLLHADNPRFSQFLPIISFLSKKPHLDCVTPG 581
           S Y+S C  H +  +  A+ Q++   + D L  ++   S   P  + +    HL  VT G
Sbjct: 17  SAYKSACEEHPKLKSFDASLQQRTNKMIDSLTVEDKNGSSS-PHDAHMELSKHLVEVTQG 75

Query: 582 SVDPDLSMFDKKWDRWLMKYPII 650
             D    + D  WD   +KY ++
Sbjct: 76  VADFITEIEDDVWDNQALKYLVL 98


>sp|Q14190|SIM2_HUMAN Single-minded homolog 2 OS=Homo sapiens
           GN=SIM2 PE=1 SV=2
          Length = 667

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 132 DIALIFLGNRLLQITGNTPEDLYER 206
           D+ LIFL +R+ ++TG  P+DL E+
Sbjct: 239 DLKLIFLDSRVTEVTGYEPQDLIEK 263


>sp|Q5DTN8|JKIP3_MOUSE Janus kinase and microtubule-interacting
           protein 3 OS=Mus musculus GN=Jakmip3 PE=2 SV=2
          Length = 844

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 36  AEVLDYLESLKDQHLTIQVVEWIVQE-SRLKQYDIALIFLGNRLLQITGNTPEDLYERLE 212
           A+V + L   + + L + V +W  Q  S L++ D  ++     LLQI     ++L ER+E
Sbjct: 757 AKVAELLSEEEREKLKVAVEQWKRQVMSELRERDAQILRERMELLQIAQQRIKELEERIE 816

Query: 213 EKSQCIQEEED 245
            + + I+E E+
Sbjct: 817 TQKRQIKELEE 827


>sp|Q61079|SIM2_MOUSE Single-minded homolog 2 OS=Mus musculus
           GN=Sim2 PE=1 SV=1
          Length = 657

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 132 DIALIFLGNRLLQITGNTPEDLYER 206
           D+ LIFL +R+ ++TG  P+DL E+
Sbjct: 239 DLKLIFLDSRVTELTGYEPQDLIEK 263


>sp|Q8FUS3|FLIF_BRUSU Flagellar M-ring protein FliF OS=Brucella suis
           GN=fliF PE=3 SV=1
          Length = 580

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 18  RNLRSEAEVLDYLESLKDQHLTIQVVEWIVQESRLKQYDIALIFLGNRLLQITGNTP 188
           RN  S  E  D  E L +  +  + V  +     +K+  IA++    RLLQ  G TP
Sbjct: 327 RNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAVVIDQARLLQTAGTTP 383
tr_hit_id Q9FJN1|Q9FJN1_ARATH Emb
Definition tr|Q9FJN1|Q9FJN1_ARATH Emb|CAA18210.1 OS=Arabidopsis thaliana
Align length 78
Score (bit) 35.8
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960911|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_L02, 5'
         (656 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FJN1|Q9FJN1_ARATH Emb|CAA18210.1 OS=Arabidopsis thaliana PE...    36   2.4  
tr|A5BEL1|A5BEL1_VITVI Putative uncharacterized protein OS=Vitis...    36   2.4  
tr|Q8SRL3|Q8SRL3_ENCCU RAD18-LIKE RECOMBINATION AND DNA REPAIR P...    36   2.4  
tr|A3ZXD2|A3ZXD2_9PLAN Chromosome partition protein Smc OS=Blast...    35   3.1  
tr|Q4SWQ1|Q4SWQ1_TETNG Chromosome undetermined SCAF13546, whole ...    35   5.3  
tr|Q83HS6|Q83HS6_TROW8 Glucose-6-phosphate 1-dehydrogenase OS=Tr...    35   5.3  
tr|Q83GF4|Q83GF4_TROWT Glucose-6-phosphate 1-dehydrogenase OS=Tr...    35   5.3  
tr|Q47BN4|Q47BN4_DECAR Sensor protein OS=Dechloromonas aromatica...    34   6.9  
tr|B4SDM3|B4SDM3_PELPB Putative uncharacterized protein OS=Pelod...    34   9.0  
tr|A8FP47|A8FP47_SHESH DNA-directed DNA polymerase OS=Shewanella...    34   9.0  
tr|Q0E4N2|Q0E4N2_ORYSJ Os02g0109100 protein OS=Oryza sativa subs...    34   9.0  

>tr|Q9FJN1|Q9FJN1_ARATH Emb|CAA18210.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 387

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = +3

Query: 189 EDLYE--RLEEKSQCIQEEEDIEDMAVRGSPLKASFNIKKVVAWLAHDKRNTCADTSSLS 362
           +D++E  R +E    I EEE+ E+  VRG  + ++++ K     ++   R+T      LS
Sbjct: 282 QDIFEVPRTKESLTIISEEEEAEERNVRGKMVTSNYDRK-----VSKPPRDTSIKGEHLS 336

Query: 363 ILRRFKEEVLVISSKYQS 416
           +L+  +E++ V+ S+ +S
Sbjct: 337 LLKEIREQLNVMQSEMRS 354


>tr|A5BEL1|A5BEL1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030427 PE=4 SV=1
          Length = 1403

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
 Frame = +3

Query: 168 QITGNTPEDLYERLEEKSQCIQEEEDIEDMAVRGSPLKAS---FNIKKVVAWLAHDKRNT 338
           +I+ NT ++ +   E  +QC+QEEE ++   ++ + L ++   F   K        KR+ 
Sbjct: 497 KISYNTQKEKWTLNELIAQCVQEEERLKQEKIKSAHLASTSQGFGTNK------KRKRDN 550

Query: 339 CADTSSLSILRRFKEEVLVISSKYQSPCASHRREGNGFATWQEQKQHLGDLLHADN 506
               +++S + + K++   I+  +       ++    +ATW+E+K  L D L+  N
Sbjct: 551 KRKQTAVSGISKQKKQDKEITCFFCKKAGHMKKTCTKYATWREKKSSLTDKLYKLN 606


>tr|Q8SRL3|Q8SRL3_ENCCU RAD18-LIKE RECOMBINATION AND DNA REPAIR
           PROTEIN OS=Encephalitozoon cuniculi GN=ECU07_0390 PE=4
           SV=1
          Length = 980

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 19/176 (10%)
 Frame = +3

Query: 18  RNLRSEAEVLDYLESLKDQHLTIQVVE----WI-VQESRLKQYDIALIFLGNRLLQITGN 182
           + ++ E  VLD + + KD   TI  +E    W  V E R++       F   +       
Sbjct: 207 KRIKDEEGVLDAINNAKDMEKTILCLEDEMVWARVNEKRMQMEKCFERFRDKQ------E 260

Query: 183 TPEDLYERLEEKSQCIQEEE------DIEDMAVRGSPLKASFNIKKVVAWLAHDKRNTCA 344
             +   ERLEE SQ I E        + E+   + +  + S  I  +++ L   +R  C 
Sbjct: 261 EMDKYSERLEELSQAIGEARKRMNSIEAEEGERKRNGDRRSEEIDGMISRLRMRRREICN 320

Query: 345 DTSSLSILRRFKEEVLVISSKYQSPCAS--------HRREGNGFATWQEQKQHLGD 488
           D+  L   R FK++++    K      S        H+R  +   T Q   + LGD
Sbjct: 321 DSEELKEARDFKKKIVSDFEKQDGTVKSLLPQLEDKHKRIASEVETLQGVLERLGD 376


>tr|A3ZXD2|A3ZXD2_9PLAN Chromosome partition protein Smc
           OS=Blastopirellula marina DSM 3645 GN=DSM3645_30026 PE=4
           SV=1
          Length = 1209

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
 Frame = +3

Query: 9   GHLRNLRSEA----EVLDYLESLKDQHLTIQVVEWIVQESRLKQYDIALIFLGNRLLQIT 176
           G L+++R++A       +Y + L+D  +++ +V+W    +RL++Y++ L  L +    +T
Sbjct: 201 GRLKSVRAQAGKAQRYREYSQRLQDLRVSVGLVDWRSLSARLEEYEVELSQLRDESASLT 260

Query: 177 G--NTPEDLYERLEEKSQCIQE-----EEDIEDMAVRGSPLKASFNIK 299
                 E+    LE +S+ + E     E D+     R + L A+ N++
Sbjct: 261 QAVQASEERSTALEAESRTLSEGMAQAEGDLSRAEQRVATLSAASNMQ 308


>tr|Q4SWQ1|Q4SWQ1_TETNG Chromosome undetermined SCAF13546, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00011366001 PE=4 SV=1
          Length = 631

 Score = 34.7 bits (78), Expect = 5.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 555 ASWTKMRLWVGIEKTLDCLHEVDPPNAAFALAKWRTHSLLAGG 427
           A WT  R WV  E+ +DC  E++   +  ++A+W    + +GG
Sbjct: 69  AVWTDSRYWVQAERQMDCSWELEKDVSISSIAEWLISEVPSGG 111


>tr|Q83HS6|Q83HS6_TROW8 Glucose-6-phosphate 1-dehydrogenase
           OS=Tropheryma whipplei (strain TW08/27) GN=zwf PE=3 SV=1
          Length = 487

 Score = 34.7 bits (78), Expect = 5.3
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
 Frame = +3

Query: 75  HLTIQVVEWIVQESRLKQYD---IALIFLGNRLLQITG----------NTPEDLYERLEE 215
           H+ I + E I  E R K YD    A   L N LLQ+            N   D+    + 
Sbjct: 217 HVQITMSEDIGVEGRSKYYDGIGAARDVLQNHLLQLMALITMERPSNLNNASDIRHEKQR 276

Query: 216 KSQCIQEEEDIEDMAVRGSPLKASFNIKKVVAWLAHDKRNTCADTSSLSILR 371
             +C+   ++I   AVRG         ++VV++L  D  N  + T + + ++
Sbjct: 277 VLECVSLPKNIAQNAVRGQYSSGYLRDERVVSFLQEDGVNPSSRTETFAAIK 328


>tr|Q83GF4|Q83GF4_TROWT Glucose-6-phosphate 1-dehydrogenase
           OS=Tropheryma whipplei (strain Twist) GN=zwf PE=3 SV=1
          Length = 487

 Score = 34.7 bits (78), Expect = 5.3
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
 Frame = +3

Query: 75  HLTIQVVEWIVQESRLKQYD---IALIFLGNRLLQITG----------NTPEDLYERLEE 215
           H+ I + E I  E R K YD    A   L N LLQ+            N   D+    + 
Sbjct: 217 HVQITMSEDIGVEGRSKYYDGIGAARDVLQNHLLQLMALITMERPSNLNNASDIRHEKQR 276

Query: 216 KSQCIQEEEDIEDMAVRGSPLKASFNIKKVVAWLAHDKRNTCADTSSLSILR 371
             +C+   ++I   AVRG         ++VV++L  D  N  + T + + ++
Sbjct: 277 VLECVSLPKNIAQNAVRGQYSSGYLRDERVVSFLQEDGVNPSSRTETFAAIK 328


>tr|Q47BN4|Q47BN4_DECAR Sensor protein OS=Dechloromonas aromatica
           (strain RCB) GN=Daro_3017 PE=4 SV=1
          Length = 524

 Score = 34.3 bits (77), Expect = 6.9
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
 Frame = +3

Query: 189 EDLYERLEEKSQCIQEEEDIEDMAVRGSPLKASFNIKKVVAWLAHDKRNTCADTSS-LSI 365
           E L  R  E    IQE +D +   ++   + A   I ++ A +AH+  N     SS L  
Sbjct: 244 EMLRRRWLELGDKIQELQDAQSQLLQSEKMAA---IGQLAAGVAHEINNPVGFVSSNLGS 300

Query: 366 LRRFKEEVLVISSKYQSPCASHRREGNGF--ATWQEQKQHLGDLLHADNPRFSQFLPIIS 539
           L+ + E+++ +  +    C S       F  A +   K+ L DLL        +   I+S
Sbjct: 301 LKNYSEKMITLLDR----CRSREASEADFIAADFDYLKEDLADLLRESRDGLGRVTKIVS 356

Query: 540 FLSKKPHLD 566
            L    H+D
Sbjct: 357 DLKDFAHID 365


>tr|B4SDM3|B4SDM3_PELPB Putative uncharacterized protein
           OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 /
           BU-1) GN=Ppha_2192 PE=4 SV=1
          Length = 1049

 Score = 33.9 bits (76), Expect = 9.0
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +3

Query: 75  HLTIQVVEWIVQESRLKQYDIALIFLGNRLLQITGNTPEDLYERLEEKSQCIQEEEDIED 254
           HL +Q+  W  Q    K  D+  +F GNR+   T N   DL+       Q       + +
Sbjct: 167 HLDLQIQNWFAQ----KNSDV--VFSGNRICSHTRNAAADLFRYQSTLKQ------QLGN 214

Query: 255 MAVRGSPLKASFNIK 299
           + + GSP   SF++K
Sbjct: 215 ITLTGSPALESFSVK 229


>tr|A8FP47|A8FP47_SHESH DNA-directed DNA polymerase OS=Shewanella
           sediminis (strain HAW-EB3) GN=Ssed_0007 PE=4 SV=1
          Length = 366

 Score = 33.9 bits (76), Expect = 9.0
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = +3

Query: 150 LGNRLLQITGNTPEDLYERLEEKSQCIQEEEDIEDMAVRGSPLKASFNIKKVVAWL---- 317
           L N L++IT N PE             +E E+I D+    +PL+  FN+  ++  L    
Sbjct: 285 LENNLIKITANNPEQ------------EEAEEILDVEYENTPLEIGFNVSYLLDVLNNLP 332

Query: 318 AHDKRNTCADTSSLSILRRFKEE 386
           + D R T  D +S +++    EE
Sbjct: 333 SDDVRITLIDGNSSALIENHIEE 355