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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960930
Clone id TST39A01NGRL0008_L22
Library
Length 674
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_L22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCTTCATCCCCCTCACTCACACGAGTAAAAGGGGCAGGAGGTTCACATCACAAGTCCTG
GGAGACCGTGGTGCCCTTCCCTTTCTGTGGGTAATCAAAATTCTAATGTTGGAAGCTCTG
CCCATCAAATCAATTAGGGTTGGCTGCTTGGAGTAAGTAAGCTAGTAATGACATGACGTA
GGAGGCTGCATAAACATTAAACATATACCAGAACACACGCCCGGTCGCATCCTTTATATT
GTCACATAAGGAAGCCATATGAGCTCAGCAACTCCTTTTGGATTCCCAAATGCGACTGAG
CTGTTAATGCATTCCGCAACCATTCCACACTACCTATACACAGCACAAGTGGGTGGCCAG
TCCGAGAGCCCCGGAGACGGAAGTATTTCGGCAGGTGAATCAACTGTGACATCCATCAAG
ACAGAGAACTGGACCAATACTCCCACTGCTCGACGTATCCTCGAAAATCGAGGATTTCAT
CAGGCCCAACAAGAGACATCTCACTCTACTGTTGATAGACTAGCACTACTAGCGAGTGTC
GCTAGTGAATCTATGTTTGGTTCAGATTCTTCCTCCCCTGCTCACTTTACGCCCAACATG
TCTGCTTACATCTCTGGGCCCAATGCTCAATCAGAGGCTTTGCAAACTCTTCATCTCATG
AATTCAAACTTTAC
■■Homology search results ■■ -
sp_hit_id Q2KX74
Definition sp|Q2KX74|SYGA_BORA1 Glycyl-tRNA synthetase alpha subunit OS=Bordetella avium (strain 197N)
Align length 87
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960930|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_L22, 5'
         (674 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2KX74|SYGA_BORA1 Glycyl-tRNA synthetase alpha subunit OS=Bor...    33   1.4  
sp|O70394|I27RA_MOUSE Interleukin-27 receptor subunit alpha OS=M...    32   4.0  
sp|O74755|PST3_SCHPO Paired amphipathic helix protein pst3 OS=Sc...    31   5.2  
sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/...    31   5.2  
sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glab...    31   5.2  
sp|P37792|WZZB_SHIFL Chain length determinant protein OS=Shigell...    31   6.8  
sp|P76372|WZZB_ECOLI Chain length determinant protein OS=Escheri...    30   8.9  
sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2      30   8.9  

>sp|Q2KX74|SYGA_BORA1 Glycyl-tRNA synthetase alpha subunit
           OS=Bordetella avium (strain 197N) GN=glyQ PE=3 SV=1
          Length = 301

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
 Frame = +1

Query: 298 ELLMHSATIPHYLYTAQVGGQSESPGDGSISAGES-------TVTSIKTENWTNTPTARR 456
           E+ ++   +  + Y  QVGG   +P  G I+ G          V S+    WT     +R
Sbjct: 129 EVWLNGMEVTQFTYFQQVGGLDCTPTTGEITYGLERLAMYLQNVESVYDLVWTEGANGQR 188

Query: 457 ILENRGFHQAQQETS-----HSTVDRL 522
           +L    FHQ + E S     HS+ + L
Sbjct: 189 VLYRDVFHQNEVEQSTYNFEHSSAEML 215


>sp|O70394|I27RA_MOUSE Interleukin-27 receptor subunit alpha OS=Mus
           musculus GN=Il27ra PE=2 SV=1
          Length = 623

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = +3

Query: 207 TRTHARSHPLYCHIRKPYELSNSFWIPKCD*AVNAFRNHSTLPIHSTSGWPVREPRRRKY 386
           TR H    PL C+   P  + N  W P  D        H +   H    W V+ P ++ +
Sbjct: 25  TRPHGSPGPLQCYSVGPLGILNCSWEPLGDLETPPVLYHQSQKYHPNRVWEVKVPSKQSW 84


>sp|O74755|PST3_SCHPO Paired amphipathic helix protein pst3
           OS=Schizosaccharomyces pombe GN=pst3 PE=2 SV=1
          Length = 1154

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 28/105 (26%), Positives = 45/105 (42%)
 Frame = +1

Query: 358 QSESPGDGSISAGESTVTSIKTENWTNTPTARRILENRGFHQAQQETSHSTVDRLALLAS 537
           QS+SP + S+  G+     + TE   N    ++IL  R   +   E   + V  LAL   
Sbjct: 35  QSQSPVNTSLHNGDGKDNGVATEPVEN----KQILSERSVTRDDYEKGKTIVSSLAL--- 87

Query: 538 VASESMFGSDSSSPAHFTPNMSAYISGPNAQSEALQTLHLMNSNF 672
               S+ G D S  +     +S+  + P   ++AL  L L+   F
Sbjct: 88  ---SSISGKDGSISSQNAEGLSSSSNRPLDVNDALSYLELVKYYF 129


>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms
           J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4
          Length = 963

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = +1

Query: 349 VGGQSESPGDGSISAGESTVTSIKTENWTNTPTARRILENRGFHQAQQETSHSTVDRLAL 528
           +G  S+ P D    + +S ++  KT N T+TP   ++        +   TS ST    A 
Sbjct: 481 IGKSSDEPSDKLTQSKKSLISDAKTTNKTSTPIRPKV--------STTTTSTSTAAAAAA 532

Query: 529 LASVASESMFGSDSSS 576
            A++A++    + +SS
Sbjct: 533 AATIAAKQAAAAIASS 548


>sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida
           glabrata GN=BBP PE=3 SV=1
          Length = 465

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = +1

Query: 409 TSIKTENWTNTPTARRILENRGFHQAQQETSHSTVDRLALLASVASESMFGSDSSSPAHF 588
           TS K +    T +++  L ++  H        S +D+L L A +++E+        P +F
Sbjct: 371 TSHKRQQINPTSSSQDTLSHQTNHMTMTTIEDSGIDKLQLPAGMSNENPI----PQPVNF 426

Query: 589 TPNMSAYISGPNAQSEALQTLHLMNSN 669
                  +SGPN   EA   L L N++
Sbjct: 427 NEIQINDVSGPNGTLEAPPGLDLGNND 453


>sp|P37792|WZZB_SHIFL Chain length determinant protein OS=Shigella
           flexneri GN=wzzB PE=3 SV=1
          Length = 325

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 490 QETSHSTVDRLALLASVASESMFGSDSSSPAHFTPN 597
           Q+T   T D L LL S A ESM   +++ P  F+PN
Sbjct: 218 QQTEDVTQDTLFLLGSEALESMIKHEATRPLVFSPN 253


>sp|P76372|WZZB_ECOLI Chain length determinant protein
           OS=Escherichia coli (strain K12) GN=wzzB PE=1 SV=2
          Length = 326

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 481 QAQQETSHSTVDRLALLASVASESMFGSDSSSPAHFTPN 597
           Q QQ     T D L LL S A ESM   +++ P  F+PN
Sbjct: 216 QIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPN 254


>sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2
          Length = 22152

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 18/147 (12%)
 Frame = +1

Query: 265  SATPFGFPNATELLMHSATIPHYLYTAQVGGQSESPGDGSISAGEST------------V 408
            S T  G  ++ EL+  +  +   ++    GG +   GD  +S   S+            V
Sbjct: 3324 SITGTGQQSSPELVSKTTGMEFSMWHGSTGGTT---GDTHVSLSTSSNILEDPVTSPNSV 3380

Query: 409  TSI------KTENWTNTPTARRILENRGFHQAQQETSHSTVDRLALLASVASESMFGSDS 570
            +S+      KTE W +T      + N     A+Q+TS S VD      S  S+   GSD 
Sbjct: 3381 SSLTDKSKHKTETWVSTTAIPSTVLNNKIMAAEQQTSRS-VDEAYSSTSSWSDQTSGSDI 3439

Query: 571  SSPAHFTPNMSAYISGPNAQSEALQTL 651
            +  A      + YI+   AQ+ +L +L
Sbjct: 3440 TLGASPDVTNTLYITS-TAQTTSLVSL 3465
tr_hit_id B2VVK8
Definition tr|B2VVK8|B2VVK8_PYRTR Putative uncharacterized protein OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
Align length 129
Score (bit) 38.1
E-value 0.51
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960930|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_L22, 5'
         (674 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2VVK8|B2VVK8_PYRTR Putative uncharacterized protein OS=Pyren...    38   0.51 
tr|A8XAN5|A8XAN5_CAEBR Putative uncharacterized protein OS=Caeno...    37   0.87 
tr|A9CRE2|A9CRE2_9PLEO Transcription factor Bmr1 OS=Bipolaris or...    37   1.5  
tr|Q5Z4W9|Q5Z4W9_ORYSJ Putative Exopolygalacturonase OS=Oryza sa...    35   5.6  
tr|A2YDG8|A2YDG8_ORYSI Putative uncharacterized protein OS=Oryza...    35   5.6  
tr|Q6DRD6|Q6DRD6_DANRE Splicing factor 3b subunit 1, 155kDa (Fra...    34   7.4  
tr|B6KE12|B6KE12_TOXGO Putative uncharacterized protein OS=Toxop...    34   7.4  
tr|Q0CNI5|Q0CNI5_ASPTN Putative uncharacterized protein OS=Asper...    34   7.4  
tr|B8MMB5|B8MMB5_9EURO Alpha-N-arabinofuranosidase, putative OS=...    34   7.4  
tr|A1D1N1|A1D1N1_NEOFI Putative uncharacterized protein OS=Neosa...    34   7.4  
tr|A9BVM4|A9BVM4_DELAS TonB-dependent siderophore receptor OS=De...    34   9.6  
tr|A8MLL7|A8MLL7_ALKOO Adenine deaminase OS=Alkaliphilus oremlan...    34   9.6  

>tr|B2VVK8|B2VVK8_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_01220 PE=4 SV=1
          Length = 439

 Score = 38.1 bits (87), Expect = 0.51
 Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
 Frame = +1

Query: 295 TELLMHSATIPHYLYTAQ--VGGQSES---PGDGSISAGESTVTSIKTENWTNTPTARRI 459
           TELL+HS+  P   YTAQ    G SES      G        +  +  +      T R  
Sbjct: 72  TELLLHSSDHPRLDYTAQEEKDGSSESYLQDYIGIFDPATKKLQIVPVKRVVVRATLRSE 131

Query: 460 LENRGFHQAQQETSHSTVDRLALLASVASESMFGSDSSSPAHFTPNMSAYISGPNAQSEA 639
           +      QA+ +T  ST+      A++A+E  FGS  S  A     ++A  SGP A++ A
Sbjct: 132 IAEMQEEQARLDTQTSTIAEKR--AALAAE--FGSKKSRKALEDRTLNAIKSGPGAEAVA 187

Query: 640 LQTLHLMNS 666
              L+ M S
Sbjct: 188 ANILNQMAS 196


>tr|A8XAN5|A8XAN5_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG10300 PE=4 SV=2
          Length = 675

 Score = 37.4 bits (85), Expect = 0.87
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
 Frame = +1

Query: 268 ATPFGFPNATELLMHSATIPHYLYTAQVGGQSESPGDGSISAGESTVTSIKTENWTNTPT 447
           +T FG    T  ++ ++       T      SES    S +  E+T +  K+E  T T +
Sbjct: 234 STSFGTTTGTSTIVTTSGKLSGTSTTDSTTSSESTSSSSETTSEATFSFTKSEITTGTQS 293

Query: 448 ARRILENRGFHQAQQETSHSTVDRLALLASVASESMFGSDSSSPAHFTPNMSAYIS-GPN 624
              +  + G    Q   S ++    + LA+    S   S +SSP   TP+ S+  + G +
Sbjct: 294 TESMTSSAG----QSTGSLTSATSSSTLATTEGSSSSTSGASSPTSTTPDASSSTTDGSS 349

Query: 625 AQSEALQT 648
           + SEA +T
Sbjct: 350 SSSEASET 357


>tr|A9CRE2|A9CRE2_9PLEO Transcription factor Bmr1 OS=Bipolaris
           oryzae GN=BMR1 PE=4 SV=1
          Length = 1012

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
 Frame = +1

Query: 346 QVGGQSESPGDGSISAGESTVTSIKTENWTNTPTARRILENRGFHQAQQETSHST---VD 516
           +VGG +E+      ++G+S+ +   TEN  N+       E++   Q+QQ T+ S+   + 
Sbjct: 119 RVGGPAEA------TSGDSSESGSTTENQNNSGNTSPNHESQSQPQSQQPTAQSSPAQIH 172

Query: 517 RLALLASVASESMFGSDSSSPAHF-TPNMSAYISGPNAQSEALQTLHLMNSN 669
           +   L++    S   S S S +H   P++S  +  P+  S   +TLHL  +N
Sbjct: 173 QQPQLSNGQPSSQRQSQSPSASHSRNPSISQSVQAPSHISPEEKTLHLPLTN 224


>tr|Q5Z4W9|Q5Z4W9_ORYSJ Putative Exopolygalacturonase OS=Oryza
           sativa subsp. japonica GN=OSJNBb0071G09.14 PE=3 SV=1
          Length = 425

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 355 GQSESPGDGSISAGESTVTSIKTENWTN-TPTARRILENRGFHQAQQETSHSTVDRLALL 531
           G+    G  +      T T+++ ++  N T    R L +RGFH     +SH   +RL + 
Sbjct: 140 GRGGEHGHSNGGGKSKTTTTLELDSVANATVRGLRFLNSRGFHLNLHRSSHVAAERLRIE 199

Query: 532 ASVASESMFGSDSSSPAHFT 591
           A  AS +  G      +H T
Sbjct: 200 APAASRNTDGIHVGLSSHVT 219


>tr|A2YDG8|A2YDG8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23157 PE=3 SV=1
          Length = 413

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 355 GQSESPGDGSISAGESTVTSIKTENWTN-TPTARRILENRGFHQAQQETSHSTVDRLALL 531
           G+    G  +      T T+++ ++  N T    R L +RGFH     +SH   +RL + 
Sbjct: 128 GRGGEHGHSNGGGKSKTTTTLELDSVANATVRGLRFLNSRGFHLNLHRSSHVAAERLRIE 187

Query: 532 ASVASESMFGSDSSSPAHFT 591
           A  AS +  G      +H T
Sbjct: 188 APAASRNTDGIHVGLSSHVT 207


>tr|Q6DRD6|Q6DRD6_DANRE Splicing factor 3b subunit 1, 155kDa
           (Fragment) OS=Danio rerio GN=sf3b1 PE=2 SV=1
          Length = 965

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 28/98 (28%), Positives = 38/98 (38%)
 Frame = +1

Query: 181 GGCINIKHIPEHTPGRILYIVT*GSHMSSATPFGFPNATELLMHSATIPHYLYTAQVGGQ 360
           GG     H P HTP    +  T G    S TP   P+     M   T  H    A   G+
Sbjct: 226 GGSETPGHTPGHTPSNSRWDETPGRPKGSETPGATPSTR---MWEPTPSHTPAGAATPGR 282

Query: 361 SESPGDGSISAGESTVTSIKTENWTNTPTARRILENRG 474
            ++PG  +   G +T +S++   W  TP   R     G
Sbjct: 283 -DTPGHATPGHGGAT-SSVRKNRWDETPKTERETPGHG 318


>tr|B6KE12|B6KE12_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_023990 PE=4 SV=1
          Length = 2149

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
 Frame = +1

Query: 382  SISAGESTVTSIKTENWTNTPTARRILENRGFHQAQQETSHSTVDRLALLASVASESMFG 561
            S SA +     +K +    + +++R+L +     A+  TS ++    A  +S ++ S   
Sbjct: 1819 SESACDRKGVEVKKQKHPCSLSSQRLLSSSASSSARAATSFTSTSSSASASSASASSASA 1878

Query: 562  SDSS---SPAHF-TPNMSAYISGPNAQSEALQTLHLMNSNF 672
            S +S   SP+ + +P+ S  +SG      A + LH++ S F
Sbjct: 1879 SSASLSLSPSPYVSPSSSDAVSGGRVDEAARKALHILQSGF 1919


>tr|Q0CNI5|Q0CNI5_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_04749
           PE=4 SV=1
          Length = 833

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = +1

Query: 355 GQSESPGDGSISAGESTVTSIKTE----NWTNTPTARRILENRGFHQAQQETSHSTVDRL 522
           G  ++ GD SISA ++    +KTE    N    P      E++ F Q      H T   +
Sbjct: 306 GLPKADGDQSISAKDAIAPQVKTEPASMNLDKVPLTEET-ESKSFAQLDGTEDHPTQKNI 364

Query: 523 ALLASVASESMFGSDSSSPAHFT 591
           A L    +     SD SSPA  T
Sbjct: 365 ANLKHGGASRASSSDRSSPAPST 387


>tr|B8MMB5|B8MMB5_9EURO Alpha-N-arabinofuranosidase, putative
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_099220 PE=4
           SV=1
          Length = 419

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +1

Query: 250 GSHMSSATPFGF----PNATELLMHSATIPHYLYTAQVGGQSESPGDG 381
           G+H+++A P GF    PN  + L ++A  P YL   +V G   +PGDG
Sbjct: 106 GNHLTAAPPGGFSGPGPNGYDNLANAAAAPVYLGGQKVYGVYIAPGDG 153


>tr|A1D1N1|A1D1N1_NEOFI Putative uncharacterized protein
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=NFIA_010050 PE=4 SV=1
          Length = 701

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
 Frame = +1

Query: 370 PGD--GSISAGESTVTSIK--TENWTNTPTARRILENRGFHQA-------------QQET 498
           PGD   SISA  STV+  +  T +WT+ P+   +L       A             ++ET
Sbjct: 545 PGDMFESISALSSTVSMEQHPTPSWTDQPSFSTVLSLTAAEPAMTVETSTLQKETVREET 604

Query: 499 SHSTVDRLALLASVASESMFGSDSSSPAHFTPNMSAYISGPNAQSEAL 642
           S  T   +    S ASES+  S SS+ A  TP +SA +S   A S+++
Sbjct: 605 SSRTSQAIP---SAASESVTVSSSSTAAP-TPQISAPVSSTTASSKSV 648