DK960948
Clone id TST39A01NGRL0008_M17
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_M17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CAAGTCTGGTAAAGTAGCCTATATATCCTCATCAACCTGATGCCATTGATCATCCATGAC
ATCTTGTTGGACCTCGGATGAATACTCTGGATTAGTCTAGGCCTAAAGCTCGGACAGTCG
TAGCTGACCTGAAGAAGATCAGGTAAGTCCTTGCCCTAGACACCCGCTCGAGGAGCTTGA
CTAATGCGCCGGAGCGCAAGATGAACGATTTAAAGCACGCTGCATCACATTCTGTGTCCA
TAAGGGATGTCAAAGCGTCGCTCAACCCTGTCGGAACAGCAAAACCTAGTACAACTGATC
ATGAGATGACTACAACTACCCCTTTGCAACAATATAAGGAGCATACACATTGTGAATTCA
GCTACAGCCTGAATTAGCACACGATGGGGGGATCAAAAGGGATACTGAATTGATTGATGA
CAGTTTCTTGCAATCCTACAAAAGTGCATTCAATATACTTTCCGAGGATGAATGGAACGT
GATGGAGGCATTATGTCAAGATTCAG
■■Homology search results ■■ -
sp_hit_id Q9QXG9
Definition sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus musculus
Align length 111
Score (bit) 33.5
E-value 0.58
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960948|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_M17, 5'
(506 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus ... 33 0.58
sp|Q2L244|UVRB_BORA1 UvrABC system protein B OS=Bordetella avium... 31 2.9
sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 OS... 31 3.8
sp|Q3UHK6|TEN4_MOUSE Teneurin-4 OS=Mus musculus GN=Odz4 PE=2 SV=2 30 6.5
sp|Q0VAA2|CN16B_HUMAN Uncharacterized protein C14orf166B OS=Homo... 30 8.4

>sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus
musculus GN=Tinf2 PE=2 SV=1
Length = 341

Score = 33.5 bits (75), Expect = 0.58
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +3

Query: 6 LVK*PIYPHQPDAIDHP*HLVGPRMNTLD*SRPKARTVVADLKKIR*VLALDTRSRSLTN 185
L K + PHQP +++HP HL G R N + K+R+ K A ++
Sbjct: 221 LPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKSRSHWTSAK------ACHKERPTVML 274

Query: 186 APERKM----NDLKHAASHSVSIRDVKASLNPVGTAKPSTTDHEMTTTTPL 326
P R M DL + S AS VGT +P T+ T + PL
Sbjct: 275 LPFRNMGLPAQDLSNPKSRE---EPGAASAASVGT-EPVCTEEAKTPSRPL 321


>sp|Q2L244|UVRB_BORA1 UvrABC system protein B OS=Bordetella avium
(strain 197N) GN=uvrB PE=3 SV=1
Length = 676

Score = 31.2 bits (69), Expect = 2.9
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3

Query: 159 DTRSRSLTNAPERKMNDLKHAASHSVSIRDVKASLNPV--GTAKPSTTDHEMTTTTPL 326
D+ R++ R+ L+H A H ++ R V ++ + G P+TT + PL
Sbjct: 567 DSMRRAMDETSRRRSKQLQHNADHGITARGVNKAVRELIDGVMAPATTHDALEDAVPL 624


>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
OS=Mus musculus GN=Sfrs4 PE=2 SV=1
Length = 489

Score = 30.8 bits (68), Expect = 3.8
Identities = 23/87 (26%), Positives = 38/87 (43%)
Frame = +3

Query: 96 SRPKARTVVADLKKIR*VLALDTRSRSLTNAPERKMNDLKHAASHSVSIRDVKASLNPVG 275
SR ++R+ D +K R RS + R + + + HS S RD K S +
Sbjct: 339 SRSRSRSRSKDKRK--------GRKRSRDESRSRSRSKSERSRKHS-SKRDSKVSSSSSS 389

Query: 276 TAKPSTTDHEMTTTTPLQQYKEHTHCE 356
+ K TDH + + + + +EH E
Sbjct: 390 SKKKKDTDHSRSPSRSVSKEREHAKAE 416


>sp|Q3UHK6|TEN4_MOUSE Teneurin-4 OS=Mus musculus GN=Odz4 PE=2 SV=2
Length = 2771

Score = 30.0 bits (66), Expect = 6.5
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3

Query: 228 HSVSIRDV-KASLNPVGTAKPSTTDHEMTTTTPLQQYKEHTHCEFSYSLN 374
H+ SI + + + P P+ TDH ++ P +E TH + ++ LN
Sbjct: 193 HAASINSLNRGNFTPRSNPSPAPTDHSLSGEPPAGSAQEPTHAQDNWLLN 242


>sp|Q0VAA2|CN16B_HUMAN Uncharacterized protein C14orf166B OS=Homo
sapiens GN=C14orf166B PE=2 SV=1
Length = 462

Score = 29.6 bits (65), Expect = 8.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +3

Query: 216 HAASHSVSIRDVKASLNPVGTAKPSTTDHEMT----TTTPLQQYK 338
+A H ++I D SLNP GT K S + + PL QY+
Sbjct: 393 YADQHKITIVDFFKSLNPTGTMKMSVDEFQKVMIEQNKVPLNQYQ 437


tr_hit_id Q4SN38
Definition tr|Q4SN38|Q4SN38_TETNG Chromosome 6 SCAF14544, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 65
Score (bit) 37.7
E-value 0.32
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960948|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_M17, 5'
(506 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4SN38|Q4SN38_TETNG Chromosome 6 SCAF14544, whole genome shot... 38 0.32
tr|Q4SAS7|Q4SAS7_TETNG Chromosome 3 SCAF14679, whole genome shot... 38 0.32
tr|Q8CH11|Q8CH11_MUSSP TRF1-interacting protein TIN2 OS=Mus spre... 35 1.6
tr|A9V4X9|A9V4X9_MONBE Predicted protein OS=Monosiga brevicollis... 35 2.1
tr|Q8K1K3|Q8K1K3_MOUSE Putative uncharacterized protein OS=Mus m... 33 6.0
tr|Q8CJ45|Q8CJ45_MOUSE TRF1-interacting protein TIN2 OS=Mus musc... 33 6.0
tr|Q3UMZ4|Q3UMZ4_MOUSE Putative uncharacterized protein OS=Mus m... 33 6.0

>tr|Q4SN38|Q4SN38_TETNG Chromosome 6 SCAF14544, whole genome shotgun
sequence OS=Tetraodon nigroviridis GN=GSTENG00015458001
PE=4 SV=1
Length = 357

Score = 37.7 bits (86), Expect = 0.32
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = -2

Query: 265 LSDALTSLMDTECDAACFKSFILRSGALVKLLERV---SRARTYLIFFRSATTVRALGLD 95
L DAL +++ TE C+KS++L SG V LLE V S T L+ + +A + LD
Sbjct: 99 LYDALAAVVGTEDTTECYKSYLLPSGDAVSLLENVALISDGTTGLVTWEAALYLAEWALD 158

Query: 94 *SRVF 80
+ F
Sbjct: 159 HQQTF 163


>tr|Q4SAS7|Q4SAS7_TETNG Chromosome 3 SCAF14679, whole genome shotgun
sequence. (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG00021285001 PE=4 SV=1
Length = 265

Score = 37.7 bits (86), Expect = 0.32
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = -2

Query: 265 LSDALTSLMDTECDAACFKSFILRSGALVKLLERV---SRARTYLIFFRSATTVRALGLD 95
L DAL +++ TE C+KS++L SG V LLE V S T L+ + +A + LD
Sbjct: 70 LYDALAAVVGTEDTTECYKSYLLPSGDAVSLLENVALISDGTTGLVTWEAALYLAEWALD 129

Query: 94 *SRVF 80
+ F
Sbjct: 130 HQQTF 134


>tr|Q8CH11|Q8CH11_MUSSP TRF1-interacting protein TIN2 OS=Mus spretus
PE=2 SV=1
Length = 411

Score = 35.4 bits (80), Expect = 1.6
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3

Query: 6 LVK*PIYPHQPDAIDHP*HLVGPRMNTLD*SRPKAR----TVVADLKKIR*VLALDTR-- 167
L K + PHQP +++HP HL G R N + K+R + A K+ V+ L R
Sbjct: 220 LPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKSRSHWTSAKACHKERPTVMLLPFRNM 279

Query: 168 ---SRSLTNAPERKMNDLKHAAS-HSVSIRDVKASLNPVG 275
++ L N R+ D AAS +V + K P+G
Sbjct: 280 GSPAQDLPNPKSREEPDAASAASVGTVCTEEAKTPSRPLG 319


>tr|A9V4X9|A9V4X9_MONBE Predicted protein OS=Monosiga brevicollis
GN=10012 PE=4 SV=1
Length = 4875

Score = 35.0 bits (79), Expect = 2.1
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3

Query: 153 ALDTRSR------SLTNAPERKMNDLKHAASHSVSIRDVKASLNPVGTAKPSTTDHEMTT 314
A+DTR+ S ++AP+ N ++S + D K S NP T + ST +++ T
Sbjct: 2366 AMDTRAETAPTAASTSSAPQGAGNAATQSSSGDGQVADAKPSANPSSTTEASTANNDAAT 2425

Query: 315 TT 320
TT
Sbjct: 2426 TT 2427


>tr|Q8K1K3|Q8K1K3_MOUSE Putative uncharacterized protein OS=Mus
musculus GN=Tinf2 PE=2 SV=1
Length = 414

Score = 33.5 bits (75), Expect = 6.0
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +3

Query: 6 LVK*PIYPHQPDAIDHP*HLVGPRMNTLD*SRPKARTVVADLKKIR*VLALDTRSRSLTN 185
L K + PHQP +++HP HL G R N + K+R+ K A ++
Sbjct: 221 LPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKSRSHWTSAK------ACHKERPTVML 274

Query: 186 APERKM----NDLKHAASHSVSIRDVKASLNPVGTAKPSTTDHEMTTTTPL 326
P R M DL + S AS VGT +P T+ T + PL
Sbjct: 275 LPFRNMGLPAQDLSNPKSRE---EPGAASAASVGT-EPVCTEEAKTPSRPL 321


>tr|Q8CJ45|Q8CJ45_MOUSE TRF1-interacting protein TIN2 OS=Mus
musculus GN=Tinf2 PE=2 SV=1
Length = 414

Score = 33.5 bits (75), Expect = 6.0
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +3

Query: 6 LVK*PIYPHQPDAIDHP*HLVGPRMNTLD*SRPKARTVVADLKKIR*VLALDTRSRSLTN 185
L K + PHQP +++HP HL G R N + K+R+ K A ++
Sbjct: 221 LPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKSRSHWTSAK------ACHKERPTVML 274

Query: 186 APERKM----NDLKHAASHSVSIRDVKASLNPVGTAKPSTTDHEMTTTTPL 326
P R M DL + S AS VGT +P T+ T + PL
Sbjct: 275 LPFRNMGLPAQDLSNPKSRE---EPGAASAASVGT-EPVCTEEAKTPSRPL 321


>tr|Q3UMZ4|Q3UMZ4_MOUSE Putative uncharacterized protein OS=Mus
musculus GN=Tinf2 PE=2 SV=1
Length = 419

Score = 33.5 bits (75), Expect = 6.0
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +3

Query: 6 LVK*PIYPHQPDAIDHP*HLVGPRMNTLD*SRPKARTVVADLKKIR*VLALDTRSRSLTN 185
L K + PHQP +++HP HL G R N + K+R+ K A ++
Sbjct: 221 LPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKSRSHWTSAK------ACHKERPTVML 274

Query: 186 APERKM----NDLKHAASHSVSIRDVKASLNPVGTAKPSTTDHEMTTTTPL 326
P R M DL + S AS VGT +P T+ T + PL
Sbjct: 275 LPFRNMGLPAQDLSNPKSRE---EPGAASAASVGT-EPVCTEEAKTPSRPL 321