DK960948 |
Clone id |
TST39A01NGRL0008_M17 |
Library |
TST39 |
Length |
506 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_M17. 5' end sequence. |
Accession |
DK960948 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CAAGTCTGGTAAAGTAGCCTATATATCCTCATCAACCTGATGCCATTGATCATCCATGAC ATCTTGTTGGACCTCGGATGAATACTCTGGATTAGTCTAGGCCTAAAGCTCGGACAGTCG TAGCTGACCTGAAGAAGATCAGGTAAGTCCTTGCCCTAGACACCCGCTCGAGGAGCTTGA CTAATGCGCCGGAGCGCAAGATGAACGATTTAAAGCACGCTGCATCACATTCTGTGTCCA TAAGGGATGTCAAAGCGTCGCTCAACCCTGTCGGAACAGCAAAACCTAGTACAACTGATC ATGAGATGACTACAACTACCCCTTTGCAACAATATAAGGAGCATACACATTGTGAATTCA GCTACAGCCTGAATTAGCACACGATGGGGGGATCAAAAGGGATACTGAATTGATTGATGA CAGTTTCTTGCAATCCTACAAAAGTGCATTCAATATACTTTCCGAGGATGAATGGAACGT GATGGAGGCATTATGTCAAGATTCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9QXG9 |
Definition |
sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus musculus |
Align length |
111 |
Score (bit) |
33.5 |
E-value |
0.58 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q4SN38 |
Definition |
tr|Q4SN38|Q4SN38_TETNG Chromosome 6 SCAF14544, whole genome shotgun sequence OS=Tetraodon nigroviridis |
Align length |
65 |
Score (bit) |
37.7 |
E-value |
0.32 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960948|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_M17, 5' (506 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q4SN38|Q4SN38_TETNG Chromosome 6 SCAF14544, whole genome shot... 38 0.32 tr|Q4SAS7|Q4SAS7_TETNG Chromosome 3 SCAF14679, whole genome shot... 38 0.32 tr|Q8CH11|Q8CH11_MUSSP TRF1-interacting protein TIN2 OS=Mus spre... 35 1.6 tr|A9V4X9|A9V4X9_MONBE Predicted protein OS=Monosiga brevicollis... 35 2.1 tr|Q8K1K3|Q8K1K3_MOUSE Putative uncharacterized protein OS=Mus m... 33 6.0 tr|Q8CJ45|Q8CJ45_MOUSE TRF1-interacting protein TIN2 OS=Mus musc... 33 6.0 tr|Q3UMZ4|Q3UMZ4_MOUSE Putative uncharacterized protein OS=Mus m... 33 6.0
>tr|Q4SN38|Q4SN38_TETNG Chromosome 6 SCAF14544, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00015458001 PE=4 SV=1 Length = 357
Score = 37.7 bits (86), Expect = 0.32 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Frame = -2
Query: 265 LSDALTSLMDTECDAACFKSFILRSGALVKLLERV---SRARTYLIFFRSATTVRALGLD 95 L DAL +++ TE C+KS++L SG V LLE V S T L+ + +A + LD Sbjct: 99 LYDALAAVVGTEDTTECYKSYLLPSGDAVSLLENVALISDGTTGLVTWEAALYLAEWALD 158
Query: 94 *SRVF 80 + F Sbjct: 159 HQQTF 163
>tr|Q4SAS7|Q4SAS7_TETNG Chromosome 3 SCAF14679, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00021285001 PE=4 SV=1 Length = 265
Score = 37.7 bits (86), Expect = 0.32 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Frame = -2
Query: 265 LSDALTSLMDTECDAACFKSFILRSGALVKLLERV---SRARTYLIFFRSATTVRALGLD 95 L DAL +++ TE C+KS++L SG V LLE V S T L+ + +A + LD Sbjct: 70 LYDALAAVVGTEDTTECYKSYLLPSGDAVSLLENVALISDGTTGLVTWEAALYLAEWALD 129
Query: 94 *SRVF 80 + F Sbjct: 130 HQQTF 134
>tr|Q8CH11|Q8CH11_MUSSP TRF1-interacting protein TIN2 OS=Mus spretus PE=2 SV=1 Length = 411
Score = 35.4 bits (80), Expect = 1.6 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 10/100 (10%) Frame = +3
Query: 6 LVK*PIYPHQPDAIDHP*HLVGPRMNTLD*SRPKAR----TVVADLKKIR*VLALDTR-- 167 L K + PHQP +++HP HL G R N + K+R + A K+ V+ L R Sbjct: 220 LPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKSRSHWTSAKACHKERPTVMLLPFRNM 279
Query: 168 ---SRSLTNAPERKMNDLKHAAS-HSVSIRDVKASLNPVG 275 ++ L N R+ D AAS +V + K P+G Sbjct: 280 GSPAQDLPNPKSREEPDAASAASVGTVCTEEAKTPSRPLG 319
>tr|A9V4X9|A9V4X9_MONBE Predicted protein OS=Monosiga brevicollis GN=10012 PE=4 SV=1 Length = 4875
Score = 35.0 bits (79), Expect = 2.1 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Frame = +3
Query: 153 ALDTRSR------SLTNAPERKMNDLKHAASHSVSIRDVKASLNPVGTAKPSTTDHEMTT 314 A+DTR+ S ++AP+ N ++S + D K S NP T + ST +++ T Sbjct: 2366 AMDTRAETAPTAASTSSAPQGAGNAATQSSSGDGQVADAKPSANPSSTTEASTANNDAAT 2425
Query: 315 TT 320 TT Sbjct: 2426 TT 2427
>tr|Q8K1K3|Q8K1K3_MOUSE Putative uncharacterized protein OS=Mus musculus GN=Tinf2 PE=2 SV=1 Length = 414
Score = 33.5 bits (75), Expect = 6.0 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Frame = +3
Query: 6 LVK*PIYPHQPDAIDHP*HLVGPRMNTLD*SRPKARTVVADLKKIR*VLALDTRSRSLTN 185 L K + PHQP +++HP HL G R N + K+R+ K A ++ Sbjct: 221 LPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKSRSHWTSAK------ACHKERPTVML 274
Query: 186 APERKM----NDLKHAASHSVSIRDVKASLNPVGTAKPSTTDHEMTTTTPL 326 P R M DL + S AS VGT +P T+ T + PL Sbjct: 275 LPFRNMGLPAQDLSNPKSRE---EPGAASAASVGT-EPVCTEEAKTPSRPL 321
>tr|Q8CJ45|Q8CJ45_MOUSE TRF1-interacting protein TIN2 OS=Mus musculus GN=Tinf2 PE=2 SV=1 Length = 414
Score = 33.5 bits (75), Expect = 6.0 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Frame = +3
Query: 6 LVK*PIYPHQPDAIDHP*HLVGPRMNTLD*SRPKARTVVADLKKIR*VLALDTRSRSLTN 185 L K + PHQP +++HP HL G R N + K+R+ K A ++ Sbjct: 221 LPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKSRSHWTSAK------ACHKERPTVML 274
Query: 186 APERKM----NDLKHAASHSVSIRDVKASLNPVGTAKPSTTDHEMTTTTPL 326 P R M DL + S AS VGT +P T+ T + PL Sbjct: 275 LPFRNMGLPAQDLSNPKSRE---EPGAASAASVGT-EPVCTEEAKTPSRPL 321
>tr|Q3UMZ4|Q3UMZ4_MOUSE Putative uncharacterized protein OS=Mus musculus GN=Tinf2 PE=2 SV=1 Length = 419
Score = 33.5 bits (75), Expect = 6.0 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Frame = +3
Query: 6 LVK*PIYPHQPDAIDHP*HLVGPRMNTLD*SRPKARTVVADLKKIR*VLALDTRSRSLTN 185 L K + PHQP +++HP HL G R N + K+R+ K A ++ Sbjct: 221 LPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKSRSHWTSAK------ACHKERPTVML 274
Query: 186 APERKM----NDLKHAASHSVSIRDVKASLNPVGTAKPSTTDHEMTTTTPL 326 P R M DL + S AS VGT +P T+ T + PL Sbjct: 275 LPFRNMGLPAQDLSNPKSRE---EPGAASAASVGT-EPVCTEEAKTPSRPL 321
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