DK960949
Clone id TST39A01NGRL0008_M18
Library
Length 641
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_M18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GGGTGCTTGTCTTTATCCCCACTCTTTGGACCTCTTCATTTGCCCATCCACTCGCTGGAG
CAGACGAAAGAATGACAGTAATAAATGCGTCTCTTCATCCAACACAACCTTTGACATTTT
CTGTCAACCATTTCTGGCTTTTCGTGGCGAGCTCATAGTCGGAAATTTGGGCAGCAAACG
CCTCAGCTTGTGCTGCACCGCCGTTGGTAACCCTCACGTTTCTGGGGAATCTAGATTTTC
TGACAGTGGCAATGGCTCCTATGACTCATGCTCCTCAACACACCAAAGTGATAAGGAGAG
GCTCTTTATTGAGAGACTTGTATCAGCGCTCAAGAGCATCCAATCTGTTTTGCCCGGAGG
CTCTTGGTGGAAGGTTCATGGAGTCATTCAGGATGATTCATCCCAGATTTCTTTTGTGTC
AGCGATGCAACGCTTCTGGCCTCTTGTTGCTCCTGACAAACTTATAATCAGCGTGGCTTT
CCTCGCGCTTGTGCTAGCAGCATTCTCAGAAATCGCAATACCACATTATGTAACAGCTAC
CATTTTCTCTGCTCAAAGTGGTCTAAAACATGAGTTTGTTCAAAATGCAAAACGTCTCGC
CATTTTGAGCATTGCATTTGGATTATTCAGCGGGTTGCGGG
■■Homology search results ■■ -
sp_hit_id Q8RY46
Definition sp|Q8RY46|TAP1_ARATH Antigen peptide transporter-like 1, chloroplastic OS=Arabidopsis thaliana
Align length 133
Score (bit) 72.4
E-value 2.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960949|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_M18, 5'
(641 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8RY46|TAP1_ARATH Antigen peptide transporter-like 1, chlorop... 72 2e-12
sp|Q9HN70|THSA_HALSA Thermosome subunit alpha OS=Halobacterium s... 31 6.2

>sp|Q8RY46|TAP1_ARATH Antigen peptide transporter-like 1,
chloroplastic OS=Arabidopsis thaliana GN=TAP1 PE=2 SV=1
Length = 700

Score = 72.4 bits (176), Expect = 2e-12
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Frame = +2

Query: 251 NGSYDSCSSTHQSDKERLFI-ERLVSALKSIQSVLPGGSWWKVHGVIQDD--SSQISFVS 421
NG+ + ++ + + + + E++ + ++++LPGGSWW + + ++
Sbjct: 64 NGAVAETAEYYEGEGDNVSLAEKIRQCIDFLRTILPGGSWWSFSDEVDGRFIAKPVTVWR 123

Query: 422 AMQRFWPLVAPDKXXXXXXXXXXXXXXXXEIAIPHYVTATIFSAQSGLKHEFVQNAKRLA 601
A+ R W LVA D+ EI IPH++TA+IFSAQSG F +N K L
Sbjct: 124 ALSRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFLTASIFSAQSGDIAVFHRNVKLLV 183

Query: 602 ILSIAFGLFSGLR 640
L + G+ SG+R
Sbjct: 184 TLCVTSGICSGIR 196


>sp|Q9HN70|THSA_HALSA Thermosome subunit alpha OS=Halobacterium
salinarium GN=thsA PE=3 SV=2
Length = 562

Score = 30.8 bits (68), Expect = 6.2
Identities = 26/97 (26%), Positives = 42/97 (43%)
Frame = +2

Query: 74 DSNKCVSSSNTTFDIFCQPFLAFRGELIVGNLGSKRLSLCCTAVGNPHVSGESRFSDSGN 253
D+ V +++ D Q +LA G L V S + A G VS + +
Sbjct: 282 DAGANVVFADSGIDDMAQHYLAKEGILAVRRAKSDDFTRLSRATGATPVSNVNDIEAADL 341

Query: 254 GSYDSCSSTHQSDKERLFIERLVSALKSIQSVLPGGS 364
G+ S + ER+F+E + A KS+ +L GG+
Sbjct: 342 GAAGSVAQKDIGGDERIFVEDVEEA-KSVTLILRGGT 377


tr_hit_id A7QXY6
Definition tr|A7QXY6|A7QXY6_VITVI Chromosome undetermined scaffold_235, whole genome shotgun sequence OS=Vitis vinifera
Align length 153
Score (bit) 75.9
E-value 2.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960949|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_M18, 5'
(641 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QXY6|A7QXY6_VITVI Chromosome undetermined scaffold_235, who... 76 2e-12
tr|B8A841|B8A841_ORYSI Putative uncharacterized protein OS=Oryza... 75 3e-12
tr|A9TRT8|A9TRT8_PHYPA ATP-binding cassette transporter, subfami... 69 3e-10
tr|A9TQ95|A9TQ95_PHYPA ATP-binding cassette transporter, subfami... 67 9e-10
tr|A5C235|A5C235_VITVI Putative uncharacterized protein (Fragmen... 65 4e-09
tr|B6U3G3|B6U3G3_MAIZE Putative uncharacterized protein OS=Zea m... 42 0.032
tr|A7PM33|A7PM33_VITVI Chromosome chr14 scaffold_21, whole genom... 42 0.042
tr|Q582A3|Q582A3_9TRYP Putative uncharacterized protein OS=Trypa... 35 5.1
tr|A0CAI9|A0CAI9_PARTE Chromosome undetermined scaffold_161, who... 35 5.1

>tr|A7QXY6|A7QXY6_VITVI Chromosome undetermined scaffold_235, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00009463001 PE=3 SV=1
Length = 707

Score = 75.9 bits (185), Expect = 2e-12
Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Frame = +2

Query: 194 CTAVGNPHVSGESR-FSDSGNGSYDSCSSTHQSDKERL-FIERLVSALKSIQSVLPGGSW 367
CT+ N ++ S S S NG S+ S+ +++ F +R + I+S+ PGGSW
Sbjct: 49 CTSPPNCRLNSFSTPKSASVNGFSVHNSNPEGSENDQVEFPKRFRELVHFIRSIWPGGSW 108

Query: 368 WKV--HGVIQDDSSQISFVSAMQRFWPLVAPDKXXXXXXXXXXXXXXXXEIAIPHYVTAT 541
W + H + ++ + A+QR W LVA D+ EI+IPH++TA+
Sbjct: 109 WSLSDHADFIMTAKPVTVLRALQRMWGLVAKDRWIIFAAFSALVLAAVSEISIPHFLTAS 168

Query: 542 IFSAQSGLKHEFVQNAKRLAILSIAFGLFSGLR 640
IFSAQSG F +N L L A G+ SGLR
Sbjct: 169 IFSAQSGEIVVFHRNVGLLVFLCFASGICSGLR 201


>tr|B8A841|B8A841_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_04878 PE=4 SV=1
Length = 723

Score = 75.5 bits (184), Expect = 3e-12
Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Frame = +2

Query: 305 FIERLVSALKSIQSVLPGGSWWKVH-----GVIQDDSSQISFVSAMQRFWPLVAPDKXXX 469
FIERL ++VLPGGSWW++ G + ++S + SA++R W LVA D+
Sbjct: 75 FIERL-------RNVLPGGSWWRLEDGEEAGGGRAEASGATAASALRRMWALVASDRWVV 127

Query: 470 XXXXXXXXXXXXXEIAIPHYVTATIFSAQSGLKHEFVQNAKRLAILSIAFGLFSGLR 640
EIAIPH + A+IFSAQ+G F +NAK L +L + G+FSG+R
Sbjct: 128 FVGFASLVGAALAEIAIPHLLAASIFSAQNG-GAVFYRNAKLLVVLCLISGVFSGVR 183


>tr|A9TRT8|A9TRT8_PHYPA ATP-binding cassette transporter, subfamily
B, member 6, group TAP protein PpABCB6 OS=Physcomitrella
patens subsp. patens GN=ppabcb6 PE=3 SV=1
Length = 578

Score = 68.6 bits (166), Expect = 3e-10
Identities = 33/72 (45%), Positives = 42/72 (58%)
Frame = +2

Query: 425 MQRFWPLVAPDKXXXXXXXXXXXXXXXXEIAIPHYVTATIFSAQSGLKHEFVQNAKRLAI 604
MQR W L++PDK EI IPH+V A IFSAQ G+ +F NAK L +
Sbjct: 1 MQRLWVLISPDKLIIGLAFAALVIAALSEITIPHFVAAMIFSAQKGMTSDFYGNAKLLVL 60

Query: 605 LSIAFGLFSGLR 640
+S +GLFSG+R
Sbjct: 61 MSCTYGLFSGIR 72


>tr|A9TQ95|A9TQ95_PHYPA ATP-binding cassette transporter, subfamily
B, member 5, group TAP protein PpABCB5 OS=Physcomitrella
patens subsp. patens GN=ppabcb5 PE=3 SV=1
Length = 578

Score = 67.0 bits (162), Expect = 9e-10
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +2

Query: 425 MQRFWPLVAPDKXXXXXXXXXXXXXXXXEIAIPHYVTATIFSAQSGLKHEFVQNAKRLAI 604
M R W LV+PDK EI IPH+V A IFSAQ G+ ++F NA+ L +
Sbjct: 1 MSRLWVLVSPDKLIIGFAFTALVIAALSEITIPHFVAAMIFSAQKGMTNDFYNNARLLVM 60

Query: 605 LSIAFGLFSGLR 640
+S +GLFSG+R
Sbjct: 61 MSCTYGLFSGIR 72


>tr|A5C235|A5C235_VITVI Putative uncharacterized protein (Fragment)
OS=Vitis vinifera GN=VITISV_026170 PE=4 SV=1
Length = 391

Score = 65.1 bits (157), Expect = 4e-09
Identities = 35/104 (33%), Positives = 59/104 (56%)
Frame = +2

Query: 329 LKSIQSVLPGGSWWKVHGVIQDDSSQISFVSAMQRFWPLVAPDKXXXXXXXXXXXXXXXX 508
L++I+SVLPGGS WK+ ++++ + ++R W LV ++
Sbjct: 52 LRNIRSVLPGGSXWKL-SEYEEEAKAREVMPTLRRIWVLVEDERWVIFVAVGSLTLAALS 110

Query: 509 EIAIPHYVTATIFSAQSGLKHEFVQNAKRLAILSIAFGLFSGLR 640
EI++P+ + A++FSAQSG F +N++ L +L I G+ SGLR
Sbjct: 111 EISMPNLIAASVFSAQSGETMVFYRNSQLLILLCILSGICSGLR 154


>tr|B6U3G3|B6U3G3_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 140

Score = 42.0 bits (97), Expect = 0.032
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Frame = +2

Query: 305 FIERLVSALKSIQSVLPGGSWWKVH-------GVIQDDSSQISFVSAMQRFWPLVAPDK 460
FIERL ++VLPGGSWW++ G + + S + VSA++R W LVA D+
Sbjct: 69 FIERL-------RNVLPGGSWWRLEDGDEAGDGAGRAEGSGTTAVSALRRMWALVAGDR 120


>tr|A7PM33|A7PM33_VITVI Chromosome chr14 scaffold_21, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020665001
PE=4 SV=1
Length = 308

Score = 41.6 bits (96), Expect = 0.042
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +2

Query: 509 EIAIPHYVTATIFSAQSGLKHEFVQNAKRLAILSIAFGLFSGLR 640
EI++P+ + A++FSAQSG F +N++ L +L I G+ SGLR
Sbjct: 9 EISMPNLIAASVFSAQSGETMVFYRNSQLLILLCILSGICSGLR 52


>tr|Q582A3|Q582A3_9TRYP Putative uncharacterized protein
OS=Trypanosoma brucei GN=Tb927.8.1790 PE=4 SV=1
Length = 156

Score = 34.7 bits (78), Expect = 5.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2

Query: 11 LYPHSLDLFICPSTRWSRRKNDSNKCVSSSNTTFDIFC 124
++PH L + +CP RW R N + +S N D FC
Sbjct: 77 VWPHCLMVLLCPCARWFTRYNLRKRTGTSGNIIGDFFC 114


>tr|A0CAI9|A0CAI9_PARTE Chromosome undetermined scaffold_161, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00036586001 PE=4 SV=1
Length = 3076

Score = 34.7 bits (78), Expect = 5.1
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1

Query: 415 CVSDATLLASCCS*QTYNQRGFPRACASSILRNRNTTLCNSYHFLCSKWSKT*VCSKCKT 594
C AT SC YN++ C S N T LC + +F C + S C++C
Sbjct: 1302 CDLYATNCTSCFEALHYNKQQNYCVCQSGYFYNATTKLCEACNFTCKECSTQLKCTQCDL 1361

Query: 595 S-RHFE 609
S R+F+
Sbjct: 1362 STRYFD 1367