DK960952 |
Clone id |
TST39A01NGRL0008_M21 |
Library |
TST39 |
Length |
595 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_M21. 5' end sequence. |
Accession |
DK960952 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1585Contig1 |
Sequence |
GTTTGTGAACGTAGGCACGCGCAGAGCCACGTTTGAACAACAGGGTCAGGGAATACCGGA GACCAGCTGCTCTGCTTCCATTTTGCAGATTCAGCTTTATGCTGGCCTTTAGCTTTTACC TCCAAGGGACTTGTTTCCAGCAAGGGGTTTGATTTTCTGCGCATTTTGTGACATATTGTG CCTGTAACAAAGATGGATGGTTTGATAGCTCATAAGGCTTGCGGTCAGCAAATACTTGTC ATGCGGGATAATGATCCTGAGCTTTGCTGTAAGTTGGGCATGGGTTCTAGTGAATTTACA TGTGGAATACAGAGGGCAATTCCTCGTCTGAACTTCAAAAGAGGGCATGCTCGGGGCATT TTTCGGGCGCATGCCACCATGACCCCTCTTGAACTAGCCCGGGAGGTCAAGAAGGAAAAT CTCACTTTTGAGCTTCCTAAATTCGACAAGTCTGCACAAAACAGAGTTGATTTGGTTGTT GTAGGATCAGGCCCCGCTGGCCTTGCTGTTGCCAAGCAGGTTTCTGAAGCTGGAGTGAGT GTTTGTTGCATCGATCCTGCACCACAGAGCATTTGGCCCAATAATTATGGTGTCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q38933 |
Definition |
sp|Q38933|LCYB_ARATH Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana |
Align length |
69 |
Score (bit) |
101.0 |
E-value |
2.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960952|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_M21, 5' (595 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q38933|LCYB_ARATH Lycopene beta cyclase, chloroplastic OS=Ara... 101 2e-21 sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic OS=Sol... 100 6e-21 sp|Q43415|LCYB_CAPAN Lycopene beta cyclase, chloroplastic/chromo... 100 6e-21 sp|Q43578|LCYB_TOBAC Lycopene beta cyclase, chloroplastic OS=Nic... 98 4e-20 sp|Q9SEA0|CCS_CITSI Capsanthin/capsorubin synthase, chromoplast ... 80 1e-14 sp|Q42435|CCS_CAPAN Capsanthin/capsorubin synthase, chromoplast ... 74 4e-13 sp|Q40424|LCYB_NARPS Lycopene beta cyclase, chloroplastic/chromo... 69 2e-11 sp|Q55276|LCYB_SYNE7 Lycopene beta cyclase OS=Synechococcus elon... 43 0.001 sp|O65837|LCYE_SOLLC Lycopene epsilon cyclase, chloroplastic OS=... 41 0.004 sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic OS=... 40 0.009 sp|Q17745|TRXR1_CAEEL Thioredoxin reductase 1 OS=Caenorhabditis ... 39 0.015 sp|O57920|GGR_PYRHO Digeranylgeranylglycerophospholipid reductas... 39 0.026 sp|A3CST9|GGR_METMJ Digeranylgeranylglycerophospholipid reductas... 39 0.026 sp|Q9S158|MHPA_COMTE 3-(3-hydroxy-phenyl)propionate/3-hydroxycin... 38 0.034 sp|Q8U4J0|GGR_PYRFU Digeranylgeranylglycerophospholipid reductas... 37 0.058 sp|A7I9P9|GGR_METB6 Digeranylgeranylglycerophospholipid reductas... 37 0.075 sp|Q46337|SOXA_CORS1 Sarcosine oxidase subunit alpha OS=Coryneba... 37 0.098 sp|Q59160|OOXA_AGRT4 Opine oxidase subunit A OS=Agrobacterium tu... 37 0.098 sp|P30635|GSHR_CAEEL Probable glutathione reductase 2 OS=Caenorh... 37 0.098 sp|Q3V7Z9|THI4_HALMA Putative thiazole biosynthetic enzyme OS=Ha... 36 0.17 sp|A4T8B6|MHPA_MYCGI 3-(3-hydroxy-phenyl)propionate/3-hydroxycin... 36 0.17 sp|O34399|GLTB_BACSU Glutamate synthase [NADPH] small chain OS=B... 36 0.17 sp|Q9V2B0|GGR_PYRAB Digeranylgeranylglycerophospholipid reductas... 36 0.17 sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondrial OS=... 35 0.22 sp|Q9VNT5|TRXR2_DROME Thioredoxin reductase 2, mitochondrial OS=... 35 0.22 sp|Q9Y9Z0|THI4_AERPE Putative thiazole biosynthetic enzyme OS=Ae... 35 0.22 sp|Q02733|IRC15_YEAST Increased recombination centers protein 15... 35 0.22 sp|Q5JE27|GGR_PYRKO Digeranylgeranylglycerophospholipid reductas... 35 0.22 sp|O34214|GADH1_PECCY Gluconate 2-dehydrogenase flavoprotein OS=... 35 0.22 sp|A4X398|FENR_SALTO Ferredoxin--NADP reductase OS=Salinispora t... 35 0.22
>sp|Q38933|LCYB_ARATH Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1 Length = 501
Score = 101 bits (252), Expect = 2e-21 Identities = 48/69 (69%), Positives = 55/69 (79%) Frame = +1
Query: 388 LELAREVKKENLTFELPKFDKSAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQ 567 L+L E KKENL FELP +D S VDL +VG GPAGLAVA+QVSEAG+SVC IDP+P+ Sbjct: 57 LDLVPETKKENLDFELPLYDTSKSQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 116
Query: 568 SIWPNNYGV 594 IWPNNYGV Sbjct: 117 LIWPNNYGV 125
>sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1 Length = 500
Score = 100 bits (249), Expect = 6e-21 Identities = 50/69 (72%), Positives = 54/69 (78%) Frame = +1
Query: 388 LELAREVKKENLTFELPKFDKSAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQ 567 LEL E KKENL FELP +D S VDL VVG GPAGLAVA+QVSEAG+SVC IDP P+ Sbjct: 58 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPK 117
Query: 568 SIWPNNYGV 594 IWPNNYGV Sbjct: 118 LIWPNNYGV 126
>sp|Q43415|LCYB_CAPAN Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1 Length = 498
Score = 100 bits (249), Expect = 6e-21 Identities = 50/69 (72%), Positives = 54/69 (78%) Frame = +1
Query: 388 LELAREVKKENLTFELPKFDKSAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQ 567 LEL E KKENL FELP +D S VDL VVG GPAGLAVA+QVSEAG+SVC IDP P+ Sbjct: 56 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPK 115
Query: 568 SIWPNNYGV 594 IWPNNYGV Sbjct: 116 LIWPNNYGV 124
>sp|Q43578|LCYB_TOBAC Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1 Length = 500
Score = 97.8 bits (242), Expect = 4e-20 Identities = 49/69 (71%), Positives = 54/69 (78%) Frame = +1
Query: 388 LELAREVKKENLTFELPKFDKSAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQ 567 LEL E KKENL FELP +D S VDL VVG GPAGLAVA+QVSEAG+SV IDP+P+ Sbjct: 58 LELVPETKKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVVSIDPSPK 117
Query: 568 SIWPNNYGV 594 IWPNNYGV Sbjct: 118 LIWPNNYGV 126
>sp|Q9SEA0|CCS_CITSI Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1 Length = 503
Score = 79.7 bits (195), Expect = 1e-14 Identities = 47/103 (45%), Positives = 58/103 (56%), Gaps = 1/103 (0%) Frame = +1
Query: 289 SEFTCGIQRAIPRLNFKRGHARGIFRAHATMTPLELAREVKKENLTFELPKFDKSAQNRV 468 S F G Q A R H R R LEL E E L F+LP F S + R Sbjct: 29 SLFPLGRQNACSRKADHHHHHR--IRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRY 86
Query: 469 DLVVVGSGPAGLAVAKQVSEA-GVSVCCIDPAPQSIWPNNYGV 594 D++++G+GPAGL +A+QVS V VCC+DP+P S WPNNYGV Sbjct: 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV 129
>sp|Q42435|CCS_CAPAN Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1 Length = 498
Score = 74.3 bits (181), Expect = 4e-13 Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%) Frame = +1
Query: 388 LELAREVKKENLTFELPKFDKSAQN-RVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAP 564 L+LA K E+L + D D++++G+GPAGL +A+QVS+ G+ VCC+DP+P Sbjct: 55 LDLAPTSKPESLDVNISWVDTDLDGAEFDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSP 114
Query: 565 QSIWPNNYGV 594 S+WPNNYGV Sbjct: 115 LSMWPNNYGV 124
>sp|Q40424|LCYB_NARPS Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1 Length = 503
Score = 68.9 bits (167), Expect = 2e-11 Identities = 34/69 (49%), Positives = 45/69 (65%) Frame = +1
Query: 388 LELAREVKKENLTFELPKFDKSAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQ 567 L+L E+KKE+L F+LP +D S +DL VVG GP + + + G+SV IDP P+ Sbjct: 62 LDLVPEIKKEHLEFDLPLYDPSKALTLDLAVVGGGPLARSCSTSLG-GGLSVVSIDPNPK 120
Query: 568 SIWPNNYGV 594 IWPNNYGV Sbjct: 121 LIWPNNYGV 129
>sp|Q55276|LCYB_SYNE7 Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1 Length = 411
Score = 42.7 bits (99), Expect = 0.001 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Frame = +1
Query: 469 DLVVVGSGPAGLAVAKQVSEAGVSVCCIDPA-PQSIWPNNYGV 594 D +V+GSGPAGLA+A ++++ G+ V + P P W N YG+ Sbjct: 3 DALVIGSGPAGLAIAAELAQRGLKVQGLSPVDPFHPWENTYGI 45
>sp|O65837|LCYE_SOLLC Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1 Length = 526
Score = 41.2 bits (95), Expect = 0.004 Identities = 21/48 (43%), Positives = 32/48 (66%) Frame = +1
Query: 451 SAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQSIWPNNYGV 594 + Q +DLVV+G GPAGLA+A + ++ G++V + P + NNYGV Sbjct: 101 AGQTVLDLVVIGCGPAGLALAAESAKLGLNVGLV--GPDLPFTNNYGV 146
>sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2 Length = 524
Score = 40.0 bits (92), Expect = 0.009 Identities = 21/43 (48%), Positives = 29/43 (67%) Frame = +1
Query: 466 VDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQSIWPNNYGV 594 +DLVV+G GPAGLA+A + ++ G+ V I P + NNYGV Sbjct: 109 LDLVVIGCGPAGLALAAESAKLGLKVGLI--GPDLPFTNNYGV 149
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q403Q4 |
Definition |
tr|Q403Q4|Q403Q4_TAXDI Putative lycopene beta cyclase OS=Taxodium distichum var. imbricarium |
Align length |
97 |
Score (bit) |
117.0 |
E-value |
7.0e-25 |
Report |
|