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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960954
Clone id TST39A01NGRL0008_M23
Library
Length 592
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_M23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATCTGCTTTCCTTTCTCTGAGAGAAACCCACAAACAAATTCTCTGTATCTCACCGGCAAG
CTCGTCTTTTCTTTCTGAGTCCCTGTTAATTGAGCTCAAGGAGGAGCTTCCATGGCGAAC
TCGAGCTGGTCCCTGCGCCTCCTTTGCAGCAGCTAACGGAATTTGTGCTGGCAGTTTCAA
TTTCCTCTCGCAGGAGAGTTCATTGAAACCTCAGAGTTGGCAAAGTTCCACCAGTTTGTA
CGTTAGATCTCTCACGTTTTAAGGTAACTGAAGAGGGCAGCTGGATCGAGGAAAGCGTGC
GGAAAAATTGTCCAATTTTCTTATGTTCATGCGATTTTCACTTTCAACAGCATCAAGAGG
TTGCTTGTCGGCTTTGATCTGATGGGAGGAAGACTCAGGTTTTCTTCATTAGGCATTCTG
CTACCCCCAAGATGAGCATGGCTTGTGTTGTGAGAAATGGGTTGAGAGAGATGGGTTGAG
AGTTCGTTTTCTCTTTGGAGTTGATGTTCATGTTTGCTGAATTGCCACCGCACAGAAAGC
TTTTTGCCGGTTAAATACGGTCAACGAAGCAGCTAGCCCTGTGAAGAGGGCG
■■Homology search results ■■ -
sp_hit_id Q6AXV6
Definition sp|Q6AXV6|SPERT_RAT Spermatid-associated protein OS=Rattus norvegicus
Align length 44
Score (bit) 30.8
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960954|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_M23, 5'
         (592 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6AXV6|SPERT_RAT Spermatid-associated protein OS=Rattus norve...    31   5.3  
sp|Q24332|NT56_DROVI Lethal(2)neighbour of Tid protein OS=Drosop...    30   6.9  
sp|Q95JK3|SPERT_MACFA Spermatid-associated protein OS=Macaca fas...    30   9.0  
sp|Q8NA61|SPERT_HUMAN Spermatid-associated protein OS=Homo sapie...    30   9.0  

>sp|Q6AXV6|SPERT_RAT Spermatid-associated protein OS=Rattus
           norvegicus GN=Spert PE=2 SV=1
          Length = 447

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 228 PPVCTLDLSRFKVTEEGSWIEESVRKNCPIFLCSCDFHFQQHQE 359
           PP   L    F V ++G W+ ES R   P F  S  FH + H +
Sbjct: 117 PPRVQLSDEMF-VFQDGRWVNESCRLQSPYFSPSSSFHHKLHHK 159


>sp|Q24332|NT56_DROVI Lethal(2)neighbour of Tid protein
           OS=Drosophila virilis GN=l(2)not PE=1 SV=1
          Length = 526

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -3

Query: 389 PPIRSKPTSNLLMLLKVKIA*T*ENWTIFPHAFLDPAAL 273
           P  R K  SNLL+LLK K      NW    +   +PAAL
Sbjct: 10  PVTRRKKPSNLLLLLKEKYV----NWNFIKYLAFEPAAL 44


>sp|Q95JK3|SPERT_MACFA Spermatid-associated protein OS=Macaca
           fascicularis GN=SPERT PE=2 SV=1
          Length = 448

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 228 PPVCTLDLSRFKVTEEGSWIEESVRKNCPIFLCSCDFHFQQHQE 359
           PP   L    F V ++G W+ E+ R   P F  S  FH + H +
Sbjct: 118 PPRVQLSDEMF-VFQDGRWVNENCRLQSPYFSPSASFHHKLHHK 160


>sp|Q8NA61|SPERT_HUMAN Spermatid-associated protein OS=Homo sapiens
           GN=SPERT PE=2 SV=1
          Length = 448

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 228 PPVCTLDLSRFKVTEEGSWIEESVRKNCPIFLCSCDFHFQQHQE 359
           PP   L    F V ++G W+ E+ R   P F  S  FH + H +
Sbjct: 118 PPRVQLSDEMF-VFQDGRWVNENCRLQSPYFSPSASFHHKLHHK 160
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960954|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_M23, 5'
         (592 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******