DK960956
Clone id TST39A01NGRL0008_N01
Library
Length 683
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_N01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CAAATGTTGAATTTTGCTACCCCCATGGACGCTCTCCTCTCGCAATCTTCAGCTACCCTG
CAGACCACCGCCTTCACCTGCATGAGCACCCCACTTGCAGAGCCCAGCTTCTGCTTTCCT
TCTGCTTTAGACCTCCTCTCTGCTGATAACTGCTCTTCCTCTCCAGCTTCCAAGAAAAGG
AAGCCCAACATACCCGACTTGCAGGCCTTTCAAGAGCAGCTTCTACTCGGCGCCCACTCT
GGCTTTATGCTTATGAGTGATAACCATCACAACAGTAGCCATACCCAGAGCTTCCCTCAA
TGGACTAATGGGGACTACTCGCTCATTAAAGCTGCTACCCATATAAGCCATCTCCCTGGT
AATGATCACCATGTCCCCATGAGTGCCACCCCCAATTGCCATGATCTTGAAGATGTCCTC
AACTTCCTGTGGATGGATGATGACACGGCGTCAACGGCTCAATCTGATGCGTCTCTTCGT
GTGAGCTCCGATGATCAGCCCTTTCCCTCGCTGAAGAGGGACAGCTTGGATTGGGACTAC
TGCTCCAATGAGTCAAGCTCCAATTTGATCGGCGAGTCTAGGAATGAGGACCCACTAGGG
GGGGAACTTGTTGAGGTGGGAACGGCCTCCTCTAGGCGGGATGATAAGAGCCACTTAGCT
TCCTGTCTTGCGGGGGCCAGCTG
■■Homology search results ■■ -
sp_hit_id Q6G0C7
Definition sp|Q6G0C7|Y364_BARQU UPF0301 protein BQ03640 OS=Bartonella quintana
Align length 53
Score (bit) 32.3
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960956|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_N01, 5'
(683 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6G0C7|Y364_BARQU UPF0301 protein BQ03640 OS=Bartonella quint... 32 2.4
sp|Q9QY01|ULK2_MOUSE Serine/threonine-protein kinase ULK2 OS=Mus... 32 3.1
sp|Q01059|ACOC_RABIT Cytoplasmic aconitate hydratase OS=Oryctola... 32 3.1
sp|O77086|C3G_DROME Guanine nucleotide-releasing factor 2 OS=Dro... 31 5.4
sp|P21399|ACOC_HUMAN Cytoplasmic aconitate hydratase OS=Homo sap... 31 7.0
sp|Q75E41|BRE4_ASHGO Protein BRE4 OS=Ashbya gossypii GN=BRE4 PE=... 30 9.1

>sp|Q6G0C7|Y364_BARQU UPF0301 protein BQ03640 OS=Bartonella quintana
GN=BQ03640 PE=3 SV=1
Length = 194

Score = 32.3 bits (72), Expect = 2.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1

Query: 7 LNFATPMDALLSQSSATLQTTAFTCMSTPLAEPSFCFPSALDLLSADNCSSSP 165
+ + P+D L L + +TC T L CF + +D+L A +C P
Sbjct: 79 VRYGGPVDPL---RGFVLHSDDYTCKETVLVAEKICFTATIDILKAISCEQGP 128


>sp|Q9QY01|ULK2_MOUSE Serine/threonine-protein kinase ULK2 OS=Mus
musculus GN=Ulk2 PE=1 SV=1
Length = 1037

Score = 32.0 bits (71), Expect = 3.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +1

Query: 85 STPLAEPSFCFPSALDLLSADNCSSSPASK-KRKPNIPDLQAFQEQLL----LGAHSGFM 249
S P+ P + P + +CSSSP+ + P++PD+Q QE+ L LG +
Sbjct: 279 SCPVPVPVYSGP-----VPGSSCSSSPSCRFASPPSLPDMQHIQEENLSSPPLGPPNYLQ 333

Query: 250 LMSDNHHNSSHTQS 291
+ D+ NSS S
Sbjct: 334 VSKDSASNSSKNSS 347


>sp|Q01059|ACOC_RABIT Cytoplasmic aconitate hydratase OS=Oryctolagus
cuniculus GN=ACO1 PE=1 SV=1
Length = 889

Score = 32.0 bits (71), Expect = 3.1
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1

Query: 73 FTCMSTPLAEPSFCFPSALDLLSADNCSSSPASKKRKPNIPDLQAFQEQLLLGAHSGF-- 246
F S P +P F LDL + C S P + K + D++ E LGA GF
Sbjct: 343 FRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFES-CLGAKQGFKG 401

Query: 247 MLMSDNHHNSSHT 285
++ +HHN T
Sbjct: 402 FQVAPDHHNDHKT 414


>sp|O77086|C3G_DROME Guanine nucleotide-releasing factor 2
OS=Drosophila melanogaster GN=C3G PE=1 SV=4
Length = 1571

Score = 31.2 bits (69), Expect = 5.4
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -2

Query: 499 ADHRSSHEETHQIEPLTPC----HHPSTGS*GHLQ 407
A HRSS E ++ L+P HHP T S G LQ
Sbjct: 858 ASHRSSQSEVAELRQLSPLHHLNHHPHTASAGQLQ 892


>sp|P21399|ACOC_HUMAN Cytoplasmic aconitate hydratase OS=Homo
sapiens GN=ACO1 PE=1 SV=3
Length = 889

Score = 30.8 bits (68), Expect = 7.0
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +1

Query: 73 FTCMSTPLAEPSFCFPSALDLLSADNCSSSPASKKRKPNIPDLQAFQEQLLLGAHSGF-- 246
F + P +P F LDL + C S P + K + D++ E LGA GF
Sbjct: 343 FRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFES-CLGAKQGFKG 401

Query: 247 MLMSDNHHNSSHT 285
++ HHN T
Sbjct: 402 FQVAPEHHNDHKT 414


>sp|Q75E41|BRE4_ASHGO Protein BRE4 OS=Ashbya gossypii GN=BRE4 PE=3
SV=1
Length = 1053

Score = 30.4 bits (67), Expect = 9.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1

Query: 407 RSWQLGVALM-GTW*SLPGRWLIWVAALMSE 318
++W GVAL+ GT+ S+P W IW SE
Sbjct: 789 QAWTTGVALLIGTFCSIPINWFIWTFTARSE 819


tr_hit_id A8KYM5
Definition tr|A8KYM5|A8KYM5_FRASN 2,4-diaminobutyrate 4-transaminase OS=Frankia sp. (strain EAN1pec)
Align length 96
Score (bit) 37.7
E-value 0.69
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960956|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_N01, 5'
(683 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8KYM5|A8KYM5_FRASN 2,4-diaminobutyrate 4-transaminase OS=Fra... 38 0.69
tr|B5JMW8|B5JMW8_9BACT Putative uncharacterized protein OS=Verru... 35 3.4
tr|B8BXZ8|B8BXZ8_THAPS Predicted protein OS=Thalassiosira pseudo... 35 4.5
tr|A9UQI8|A9UQI8_MONBE Predicted protein OS=Monosiga brevicollis... 34 7.6

>tr|A8KYM5|A8KYM5_FRASN 2,4-diaminobutyrate 4-transaminase
OS=Frankia sp. (strain EAN1pec) GN=Franean1_0662 PE=3
SV=1
Length = 462

Score = 37.7 bits (86), Expect = 0.69
Identities = 32/96 (33%), Positives = 42/96 (43%)
Frame = -3

Query: 399 AIGGGTHGDMVIITREMAYMGSSFNERVVPISPLREALGMATVVMVITHKHKARVGAE*K 220
AIGGG +V E+ + + L A G AT+ +V T R A K
Sbjct: 297 AIGGGLPLAVVAYRAELDTWAPGAHAGTFRGNQLAMAAGRATLELVRTQALAERAAAAGK 356

Query: 219 LLLKGLQVGYVGLPFLGSWRGRAVISREEV*SRRKA 112
LL GL+ G PF+G RGR ++ EV S A
Sbjct: 357 RLLTGLESITRGKPFIGDVRGRGLMLGLEVVSAEAA 392


>tr|B5JMW8|B5JMW8_9BACT Putative uncharacterized protein
OS=Verrucomicrobiae bacterium DG1235 GN=VDG1235_2840
PE=4 SV=1
Length = 963

Score = 35.4 bits (80), Expect = 3.4
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1

Query: 214 EQLLLGAHSGFMLMSDNHHNSSHT-QSFPQWTNGDYSLIKAATHISHLPGNDHHVPMSAT 390
E++L+GAH + HN H+ ++F +WT+GD T++S LP + +SA
Sbjct: 684 ERILIGAHPILGVSETGLHNQEHSGETFFRWTSGDTRFSVPWTNLS-LPRSLSFTAISAA 742

Query: 391 PN 396
PN
Sbjct: 743 PN 744


>tr|B8BXZ8|B8BXZ8_THAPS Predicted protein OS=Thalassiosira
pseudonana CCMP1335 GN=THAPSDRAFT_3508 PE=4 SV=1
Length = 1097

Score = 35.0 bits (79), Expect = 4.5
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1

Query: 148 NCSSSP-ASKKRKPNIPDLQAFQEQLLLGAHSGFMLMSDNHH 270
NCSSSP A++K K +P + + +LL+GAH+G L+ + H
Sbjct: 336 NCSSSPKAARKDKAKLP-IHIIKRRLLIGAHNGNALLHNRWH 376


>tr|A9UQI8|A9UQI8_MONBE Predicted protein OS=Monosiga brevicollis
GN=22420 PE=4 SV=1
Length = 612

Score = 34.3 bits (77), Expect = 7.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1

Query: 511 LKRDSLDWDYCSNESSSNLIGESRNEDPLGGELVEVGTA 627
LK D W YCS ++ +GES + DP G VG+A
Sbjct: 327 LKEDGTHWPYCSKYLPADALGESSSTDPDVGHRDSVGSA 365