NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960964
Clone id TST39A01NGRL0008_N09
Library
Length 208
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_N09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TAAAGTTGGTAAGACTTTTAGTAGCCAGCTGCGTTCGAGGGCTTCCTTTCGCAGCAGCGC
ATCGGCGATATCGGTAGGGGGCTTCTTCTCGTCGCACCTGTGGCCGTGTCAGACAAGAAG
GCTGCCGAACCCCCTGCGCGGAGATCAAAGTGAAGAAGCTTGTGCTCAACATATTAGGAG
GTGAGAGTGCTGAGCGTCTCACAAGGGC
■■Homology search results ■■ -
sp_hit_id Q0DK10
Definition sp|Q0DK10|RL11_ORYSJ 60S ribosomal protein L11 OS=Oryza sativa subsp. japonica
Align length 25
Score (bit) 36.2
E-value 0.052
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960964|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_N09, 5'
         (208 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0DK10|RL11_ORYSJ 60S ribosomal protein L11 OS=Oryza sativa s...    36   0.052
sp|A2YDY2|RL11_ORYSI 60S ribosomal protein L11 OS=Oryza sativa s...    36   0.052
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 OS=Medicago sativ...    36   0.052
sp|Q7RVN0|RL11_NEUCR 60S ribosomal protein L11 OS=Neurospora cra...    35   0.089
sp|Q758S7|RL11_ASHGO 60S ribosomal protein L11 OS=Ashbya gossypi...    35   0.089
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 OS=Arabidopsis...    35   0.12 
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 OS=Arabidopsis...    35   0.12 
sp|Q10157|RL11_SCHPO 60S ribosomal protein L11 OS=Schizosaccharo...    35   0.15 
sp|P46222|RL11_DROME 60S ribosomal protein L11 OS=Drosophila mel...    34   0.20 
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 OS=Caenorhabditis...    34   0.20 
sp|Q3E757|RL11B_YEAST 60S ribosomal protein L11-B OS=Saccharomyc...    34   0.20 
sp|P0C0W9|RL11A_YEAST 60S ribosomal protein L11-A OS=Saccharomyc...    34   0.20 
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 OS=Leishmania maj...    33   0.34 
sp|P42922|RL11_LEICH 60S ribosomal protein L11 OS=Leishmania cha...    33   0.34 
sp|Q94793|RL11_TOXCA 60S ribosomal protein L11 (Fragment) OS=Tox...    33   0.44 
sp|Q6FTK4|RL11_CANGA 60S ribosomal protein L11 OS=Candida glabra...    33   0.44 
sp|P62914|RL11_RAT 60S ribosomal protein L11 OS=Rattus norvegicu...    33   0.58 
sp|Q5RC11|RL11_PONAB 60S ribosomal protein L11 OS=Pongo abelii G...    33   0.58 
sp|Q29205|RL11_PIG 60S ribosomal protein L11 OS=Sus scrofa GN=RP...    33   0.58 
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11 OS=Mus musculus G...    33   0.58 
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 OS=Ictalurus punc...    33   0.58 
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 OS=Homo sapiens G...    33   0.58 
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11 OS=Chinchilla lan...    33   0.58 
sp|Q3T087|RL11_BOVIN 60S ribosomal protein L11 OS=Bos taurus GN=...    33   0.58 
sp|A3KGS3|AS250_MOUSE 250 kDa substrate of Akt OS=Mus musculus G...    30   4.9  
sp|Q7U3B6|MRAY_SYNPX Phospho-N-acetylmuramoyl-pentapeptide-trans...    29   8.3  

>sp|Q0DK10|RL11_ORYSJ 60S ribosomal protein L11 OS=Oryza sativa
           subsp. japonica GN=RPL11 PE=2 SV=1
          Length = 182

 Score = 36.2 bits (82), Expect = 0.052
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  EIKV+KLVLNI  GES +RLTR
Sbjct: 10  PMREIKVQKLVLNISVGESGDRLTR 34


>sp|A2YDY2|RL11_ORYSI 60S ribosomal protein L11 OS=Oryza sativa
           subsp. indica GN=RPL11 PE=2 SV=2
          Length = 182

 Score = 36.2 bits (82), Expect = 0.052
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  EIKV+KLVLNI  GES +RLTR
Sbjct: 10  PMREIKVQKLVLNISVGESGDRLTR 34


>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 OS=Medicago sativa
           GN=RPL11 PE=2 SV=1
          Length = 181

 Score = 36.2 bits (82), Expect = 0.052
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  EIKV+KLVLNI  GES +RLTR
Sbjct: 10  PMREIKVQKLVLNISVGESGDRLTR 34


>sp|Q7RVN0|RL11_NEUCR 60S ribosomal protein L11 OS=Neurospora crassa
           GN=rpl-11 PE=3 SV=2
          Length = 174

 Score = 35.4 bits (80), Expect = 0.089
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +3

Query: 114 QEGCRTPCAEIKVKKLVLNILGGESAERLTR 206
           ++  + P  E++++KLVLNI  GES +RLTR
Sbjct: 4   EQKAQNPMRELRIQKLVLNICVGESGDRLTR 34


>sp|Q758S7|RL11_ASHGO 60S ribosomal protein L11 OS=Ashbya gossypii
           GN=RPL11 PE=3 SV=1
          Length = 174

 Score = 35.4 bits (80), Expect = 0.089
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 126 RTPCAEIKVKKLVLNILGGESAERLTR 206
           + P  E+K++KLVLNI  GES +RLTR
Sbjct: 6   QNPMRELKIEKLVLNISVGESGDRLTR 32


>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 OS=Arabidopsis
           thaliana GN=RPL11B PE=2 SV=2
          Length = 182

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  +IKV+KLVLNI  GES +RLTR
Sbjct: 10  PMRDIKVQKLVLNISVGESGDRLTR 34


>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 OS=Arabidopsis
           thaliana GN=RPL11A PE=1 SV=2
          Length = 182

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  +IKV+KLVLNI  GES +RLTR
Sbjct: 10  PMRDIKVQKLVLNISVGESGDRLTR 34


>sp|Q10157|RL11_SCHPO 60S ribosomal protein L11
           OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1
          Length = 174

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 117 EGCRTPCAEIKVKKLVLNILGGESAERLTR 206
           E  + P  E+++ KLVLNI  GES +RLTR
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTR 32


>sp|P46222|RL11_DROME 60S ribosomal protein L11 OS=Drosophila
           melanogaster GN=RpL11 PE=1 SV=2
          Length = 184

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +3

Query: 105 RVRQEGCRTPCAEIKVKKLVLNILGGESAERLTR 206
           +++++  + P  ++ ++KL LNI  GES +RLTR
Sbjct: 7   KIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTR 40


>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 OS=Caenorhabditis
           elegans GN=rpl-11.1 PE=2 SV=1
          Length = 196

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 108 VRQEGCRTPCAEIKVKKLVLNILGGESAERLTR 206
           +R++  R    E+K++KL LNI  GES +RLTR
Sbjct: 10  IREKKGRNVMRELKIQKLCLNICVGESGDRLTR 42
tr_hit_id A3BCL4
Definition tr|A3BCL4|A3BCL4_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 50
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960964|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_N09, 5'
         (208 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3BCL4|A3BCL4_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|A8NKQ0|A8NKQ0_BRUMA 60S ribosomal protein L11, putative OS=Br...    37   0.64 
tr|Q9LWN1|Q9LWN1_ORYSJ cDNA clone:J013120K02, full insert sequen...    36   0.83 
tr|Q9FSF6|Q9FSF6_TOBAC Ribosomal protein L11-like (Fragment) OS=...    36   0.83 
tr|Q8GTE2|Q8GTE2_CICAR Ribosomal protein RL5 OS=Cicer arietinum ...    36   0.83 
tr|Q676Z7|Q676Z7_HYAOR 60S ribosomal protein L11 (Fragment) OS=H...    36   0.83 
tr|Q0E2I8|Q0E2I8_ORYSJ Os02g0235600 protein OS=Oryza sativa subs...    36   0.83 
tr|B8BZ86|B8BZ86_THAPS RL11A, ribosomal protein 11A 60S large ri...    36   0.83 
tr|B8AZ52|B8AZ52_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.83 
tr|B7EI57|B7EI57_ORYSJ cDNA clone:J023055B20, full insert sequen...    36   0.83 
tr|B6T3F4|B6T3F4_MAIZE 60S ribosomal protein L11-1 OS=Zea mays P...    36   0.83 
tr|B6T2I0|B6T2I0_MAIZE 60S ribosomal protein L11-1 OS=Zea mays P...    36   0.83 
tr|B4FV31|B4FV31_MAIZE 60S ribosomal protein L11-1 OS=Zea mays P...    36   0.83 
tr|B4FGL9|B4FGL9_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.83 
tr|B4FFZ3|B4FFZ3_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.83 
tr|B3TLQ5|B3TLQ5_ELAGV 60S ribosomal protein L11 OS=Elaeis guine...    36   0.83 
tr|A9PBE6|A9PBE6_POPTR Putative uncharacterized protein OS=Popul...    36   0.83 
tr|A9PA04|A9PA04_POPTR Putative uncharacterized protein OS=Popul...    36   0.83 
tr|A9NPD1|A9NPD1_PICSI Putative uncharacterized protein OS=Picea...    36   0.83 
tr|A6MZJ2|A6MZJ2_ORYSI 60S ribosomal protein l11 (Fragment) OS=O...    36   0.83 
tr|A3B110|A3B110_ORYSJ Putative uncharacterized protein OS=Oryza...    36   0.83 
tr|A2Y1G9|A2Y1G9_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.83 
tr|A2WLV8|A2WLV8_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.83 
tr|A4QYR5|A4QYR5_MAGGR Putative uncharacterized protein OS=Magna...    36   0.83 
tr|Q19162|Q19162_CAEEL Ribosomal protein, large subunit protein ...    35   1.4  
tr|A8XJ93|A8XJ93_CAEBR CBR-RPL-11.2 protein OS=Caenorhabditis br...    35   1.4  
tr|Q6CKT4|Q6CKT4_KLULA KLLA0F08261p OS=Kluyveromyces lactis GN=K...    35   1.4  
tr|B2A944|B2A944_PODAN Predicted CDS Pa_1_8360 OS=Podospora anse...    35   1.4  
tr|A7TKU4|A7TKU4_VANPO Putative uncharacterized protein OS=Vande...    35   1.4  
tr|A6S5F3|A6S5F3_BOTFB 60S ribosomal protein L11 OS=Botryotinia ...    35   1.4  

>tr|A3BCL4|A3BCL4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_020786 PE=3 SV=1
          Length = 317

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 9/50 (18%)
 Frame = +3

Query: 84  SSRRTCGRVRQEGCRTPCAE---------IKVKKLVLNILGGESAERLTR 206
           SSR+ C R  +   R P +E         IKV+KLVLNI  GES +RLTR
Sbjct: 120 SSRQWCSRAPRRIRRAPASEKKQSNPMREIKVQKLVLNISVGESGDRLTR 169


>tr|A8NKQ0|A8NKQ0_BRUMA 60S ribosomal protein L11, putative
           OS=Brugia malayi GN=Bm1_04440 PE=3 SV=1
          Length = 195

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 108 VRQEGCRTPCAEIKVKKLVLNILGGESAERLTR 206
           +R++    P  E+K++KL LNI  GES +RLTR
Sbjct: 10  IREKKAANPMRELKIEKLCLNICVGESGDRLTR 42


>tr|Q9LWN1|Q9LWN1_ORYSJ cDNA clone:J013120K02, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0451C06.24 PE=2 SV=1
          Length = 182

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  EIKV+KLVLNI  GES +RLTR
Sbjct: 10  PMREIKVQKLVLNISVGESGDRLTR 34


>tr|Q9FSF6|Q9FSF6_TOBAC Ribosomal protein L11-like (Fragment)
           OS=Nicotiana tabacum GN=rbl11-like PE=2 SV=1
          Length = 181

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  EIKV+KLVLNI  GES +RLTR
Sbjct: 10  PMREIKVQKLVLNISVGESGDRLTR 34


>tr|Q8GTE2|Q8GTE2_CICAR Ribosomal protein RL5 OS=Cicer arietinum
           GN=rl5 PE=2 SV=1
          Length = 181

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  EIKV+KLVLNI  GES +RLTR
Sbjct: 10  PMREIKVQKLVLNISVGESGDRLTR 34


>tr|Q676Z7|Q676Z7_HYAOR 60S ribosomal protein L11 (Fragment)
           OS=Hyacinthus orientalis GN=RPL11 PE=2 SV=1
          Length = 189

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  EIKV+KLVLNI  GES +RLTR
Sbjct: 17  PMREIKVQKLVLNISVGESGDRLTR 41


>tr|Q0E2I8|Q0E2I8_ORYSJ Os02g0235600 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0235600 PE=2 SV=1
          Length = 182

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  EIKV+KLVLNI  GES +RLTR
Sbjct: 10  PMREIKVQKLVLNISVGESGDRLTR 34


>tr|B8BZ86|B8BZ86_THAPS RL11A, ribosomal protein 11A 60S large
           ribosomal subunit OS=Thalassiosira pseudonana CCMP1335
           GN=RL11A PE=4 SV=1
          Length = 177

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 117 EGCRTPCAEIKVKKLVLNILGGESAERLTR 206
           EG + P  +IKV KL+LN   GES +RLTR
Sbjct: 4   EGKKNPMKDIKVDKLILNCCVGESGDRLTR 33


>tr|B8AZ52|B8AZ52_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18846 PE=4 SV=1
          Length = 182

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  EIKV+KLVLNI  GES +RLTR
Sbjct: 10  PMREIKVQKLVLNISVGESGDRLTR 34


>tr|B7EI57|B7EI57_ORYSJ cDNA clone:J023055B20, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 182

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 132 PCAEIKVKKLVLNILGGESAERLTR 206
           P  EIKV+KLVLNI  GES +RLTR
Sbjct: 10  PMREIKVQKLVLNISVGESGDRLTR 34