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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960967
Clone id TST39A01NGRL0008_N12
Library
Length 474
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_N12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TGCCAACTTTGTACAACACAGTTGGGAATTTTGTCATGTGTGAAAATTGCCTCCCAAGGC
AGGTTTGTTGTGCGCGACGTGAAGTGTGGCGGGAACGGTGAACCTGGTTTTTTTGCACTT
CTTCGAGGTGACTGCAGGGCCCGTCTTATCAGCGTAGACTGTACAACAGAACGGGGCTGC
TCACGGGCTGCGCTCCTCTTCCTCGCCCCCGCGCTGCTATCTTTCCCAAGCTTTCATGGA
AGCTCTTCTACCCTTCTCCCCTGGGCCTTCCTTTCTCCCCCCTCGTCATTTCCTCCCCAC
CCATGATCGCTACCTCTGCCTTTCTCACAGAACTTCCCTCTCCCTCCCCTCCCCCTCCTT
TCCTAGCTCTCGCTATGGCTATCCCTGCAGTAGTTTTTTTTTCCCCCCCCCCCTTTTTCC
AGCTCTCAAGTTGAAAAAAAAGAGGGGGGCTCTGTGTGCGTGCAACCTCCACTT
■■Homology search results ■■ -
sp_hit_id P46939
Definition sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens
Align length 33
Score (bit) 30.8
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960967|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_N12, 5'
         (458 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2        31   2.9  
sp|Q27421|OSP_DROME Protein outspread OS=Drosophila melanogaster...    30   6.6  
sp|Q2G8W3|RS5_NOVAD 30S ribosomal protein S5 OS=Novosphingobium ...    29   8.6  

>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2
          Length = 3433

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 106  RSAKKPGSPFPPHFTSRTTNLPWEAIFTHDKIP 8
            + A +   P   HF S +  LPW+   +H+K+P
Sbjct: 2796 QEAHRDFGPSSQHFLSTSVQLPWQRSISHNKVP 2828


>sp|Q27421|OSP_DROME Protein outspread OS=Drosophila melanogaster
           GN=osp PE=2 SV=4
          Length = 1553

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 148 VQSTLIRRALQSPRRSAKKPGSPFPPHFTS 59
           ++   I+  LQ P  S   PG+P  PHF+S
Sbjct: 605 IEQDFIKAQLQQPSSSPVTPGTPAGPHFSS 634


>sp|Q2G8W3|RS5_NOVAD 30S ribosomal protein S5 OS=Novosphingobium
           aromaticivorans (strain DSM 12444) GN=rpsE PE=3 SV=1
          Length = 237

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 286 GWGGNDEGGERKAQGRR 236
           G GGND GGER  +GRR
Sbjct: 30  GRGGNDRGGERGGRGRR 46
tr_hit_id A9G668
Definition tr|A9G668|A9G668_SORC5 ECF-family RNA polymerase sigma factor OS=Sorangium cellulosum (strain So ce56)
Align length 50
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960967|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_N12, 5'
         (458 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9G668|A9G668_SORC5 ECF-family RNA polymerase sigma factor OS...    33   5.4  
tr|B0DDV6|B0DDV6_LACBS Predicted protein OS=Laccaria bicolor (st...    33   5.4  
tr|Q988W5|Q988W5_RHILO Mlr6565 protein OS=Rhizobium loti GN=mlr6...    33   9.2  

>tr|A9G668|A9G668_SORC5 ECF-family RNA polymerase sigma factor
           OS=Sorangium cellulosum (strain So ce56) GN=sce2498 PE=4
           SV=1
          Length = 445

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = +2

Query: 155 TGLLTGCAPLPRPRAAIFPKLSWKLFYPSPLGLPFSPLVISSPPMIATSA 304
           TGL    A  P P  A+ P        PSP  LP SP V+  PP  A +A
Sbjct: 284 TGLAMAVARTPPPPPALPPPSPAAPSLPSPAALPRSPAVLPPPPGAAAAA 333


>tr|B0DDV6|B0DDV6_LACBS Predicted protein OS=Laccaria bicolor (strain
            S238N-H82) GN=LACBIDRAFT_299024 PE=4 SV=1
          Length = 1388

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 116  LQGPSYQRRLYNRTGLLTGCAPLPRPRAAIFPKLSWKLFYPSPLGLPFSPLVISSP 283
            L  PS+   L + T  +T   P P P++A+        FY  P+  P SP  +SSP
Sbjct: 907  LSDPSFNAELSSPTSPITSPPPPPSPQSALLSS-----FYVPPISPPSSPYEMSSP 957


>tr|Q988W5|Q988W5_RHILO Mlr6565 protein OS=Rhizobium loti GN=mlr6565
           PE=4 SV=1
          Length = 700

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 63  VKCGGNGEPGFFALLRGDCRARLISVDCT 149
           +   G+G  G F L+ GDC   ++ +DCT
Sbjct: 133 IDIAGDGREGIFVLVTGDCPREILHIDCT 161