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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960972
Clone id TST39A01NGRL0008_N19
Library
Length 632
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_N19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GCACACTCATCACACACACGCACACCGCGTCCCACTCCAGATTATCTCCTTGCTCGATCT
GGCCTGCGTTGTTCTGCATAACGTTAACCCTAACTCGCTTCGCGCAAAGGCCATGTGAGC
TCATGTTTGTAGGGTTTAAGCCTTCAAAGCTATTGACGGTGTTCCTAATATTTTGCAGGA
TAGTTTCTGCAACGTTATTTTCGCATCATCTATCAGCTTGCAACACAAGTGCTTCTGCTG
TGTTTGAGGCCTGTTTTAACGGAAAAATCTATCTTCATGTAACTCTCGGTGGCCACATCA
AGCTCGGCATGCAAGCACAGACAGGCTAAGAACCCCGACGCCCATGGTTGAAGGAGCAAA
GCCCTGGTGCAATAAGAAAATACAGAGAATTGCCTGTGCACTCCTTTTCTGGTTGGTCTT
TAAAGGTACGGTATGCCCAAAAGCACAGAGTTGAGACTTACATGGCTTCCTGGATAGTTT
CCTTGTTATCATTTTTCTGGCCCTCAGTTTCCAATGATGACCTATACATTTCTTAGAGGC
TTGTACAATCGTTGCCAATACAACCATCCACCAGGTACTTCACATTGGCTCTTCAAGATC
CACAACGGCCGAAGTCTGTGCTATATATCCTT
■■Homology search results ■■ -
sp_hit_id Q62520
Definition sp|Q62520|ZIC2_MOUSE Zinc finger protein ZIC 2 OS=Mus musculus
Align length 66
Score (bit) 37.4
E-value 0.065
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960972|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_N19, 5'
         (632 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62520|ZIC2_MOUSE Zinc finger protein ZIC 2 OS=Mus musculus G...    37   0.065
sp|O95409|ZIC2_HUMAN Zinc finger protein ZIC 2 OS=Homo sapiens G...    35   0.42 
sp|Q9YIB7|ZIC2B_XENLA Zinc finger protein ZIC 2-B OS=Xenopus lae...    33   1.2  
sp|Q63ZG9|GGNB2_XENLA Gametogenetin-binding protein 2 OS=Xenopus...    32   2.7  
sp|Q4WXD3|SLD2_ASPFU DNA replication regulator sld2 OS=Aspergill...    31   4.6  

>sp|Q62520|ZIC2_MOUSE Zinc finger protein ZIC 2 OS=Mus musculus
           GN=Zic2 PE=1 SV=2
          Length = 530

 Score = 37.4 bits (85), Expect = 0.065
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = -3

Query: 372 LHQGFAPSTMGVGVLSLSVLACRA*CGHRELHEDRFFR*NRPQTQQKHLCCKLIDDAKIT 193
           LH  + P  M +G   +++ A  A   H   H   FFR  R Q  ++ L CK ID  +++
Sbjct: 211 LHNQYGPMNMNMG---MNMAAAAAHHHHHHHHPGAFFRYMRQQCIKQELICKWIDPEQLS 267

Query: 192 LQKLSC 175
             K SC
Sbjct: 268 NPKKSC 273


>sp|O95409|ZIC2_HUMAN Zinc finger protein ZIC 2 OS=Homo sapiens
           GN=ZIC2 PE=1 SV=2
          Length = 532

 Score = 34.7 bits (78), Expect = 0.42
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = -3

Query: 372 LHQGFAPSTMGVGVLSLSVLACRA*CGHRELHEDRFFR*NRPQTQQKHLCCKLIDDAKIT 193
           LH  + P  M +G+   +  A      H   H   FFR  R Q  ++ L CK ID  +++
Sbjct: 210 LHNQYGPMNMNMGMNMAAAAAHHH--HHHHHHPGAFFRYMRQQCIKQELICKWIDPEQLS 267

Query: 192 LQKLSC 175
             K SC
Sbjct: 268 NPKKSC 273


>sp|Q9YIB7|ZIC2B_XENLA Zinc finger protein ZIC 2-B OS=Xenopus laevis
           GN=zic2-B PE=2 SV=1
          Length = 497

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -3

Query: 372 LHQGFAPSTMGVGVLSLSVLACRA*CGHRELHEDRFFR*NRPQTQQKHLCCKLIDDAKIT 193
           LH  ++P  MG+ + +           H   H   FFR  R Q  ++ L CK ID  ++ 
Sbjct: 233 LHNQYSPMNMGMNMAAHH--------HHHHHHPGAFFRYMRQQCIKQELICKWIDPEQLN 284

Query: 192 LQKLSC 175
             K SC
Sbjct: 285 NPKKSC 290


>sp|Q63ZG9|GGNB2_XENLA Gametogenetin-binding protein 2 OS=Xenopus
           laevis GN=ggnbp2 PE=2 SV=1
          Length = 664

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 260 RKNLSSCNSRWPHQARHASTDRLRTPTPMVEGAKPWCNKKIQRIACA 400
           RKN +SC+   PH+ + A+  +   P   +E     CN    R  CA
Sbjct: 385 RKNKTSCDLPAPHETKSANASQNNDPPGFMESGGDSCNTSEDRNMCA 431


>sp|Q4WXD3|SLD2_ASPFU DNA replication regulator sld2 OS=Aspergillus
           fumigatus GN=sld2 PE=3 SV=1
          Length = 535

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 543 QASKKCIGHHWKLRARKMITRKLSRKPCKSQ 451
           QA  + IG HWK + +K  TR++  KP  S+
Sbjct: 351 QAPAEIIGRHWKKKGQKRTTRRVRMKPVISK 381
tr_hit_id Q8BQC1
Definition tr|Q8BQC1|Q8BQC1_MOUSE Putative uncharacterized protein OS=Mus musculus
Align length 66
Score (bit) 37.4
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960972|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_N19, 5'
         (632 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8BQC1|Q8BQC1_MOUSE Putative uncharacterized protein OS=Mus m...    37   0.76 
tr|A5PKL0|A5PKL0_BOVIN LOC514433 protein (Fragment) OS=Bos tauru...    37   0.76 
tr|B6SL01|B6SL01_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.99 
tr|A7QS73|A7QS73_VITVI Chromosome chr5 scaffold_156, whole genom...    37   0.99 
tr|Q7X8P4|Q7X8P4_ORYSJ Os04g0490700 protein OS=Oryza sativa subs...    36   1.7  
tr|Q01IU8|Q01IU8_ORYSA OSIGBa0130B08.2 protein OS=Oryza sativa G...    36   1.7  
tr|A2XUY5|A2XUY5_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.7  
tr|A2XUY3|A2XUY3_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.7  
tr|Q6Z567|Q6Z567_ORYSJ Disulfide isomerase-like protein OS=Oryza...    34   8.3  

>tr|Q8BQC1|Q8BQC1_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Zic2 PE=2 SV=1
          Length = 357

 Score = 37.4 bits (85), Expect = 0.76
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = -3

Query: 372 LHQGFAPSTMGVGVLSLSVLACRA*CGHRELHEDRFFR*NRPQTQQKHLCCKLIDDAKIT 193
           LH  + P  M +G   +++ A  A   H   H   FFR  R Q  ++ L CK ID  +++
Sbjct: 210 LHDQYGPMNMNMG---MNMAAAAAHHHHHHHHPGAFFRYMRQQCIKQELICKWIDPEQLS 266

Query: 192 LQKLSC 175
             K SC
Sbjct: 267 NPKKSC 272


>tr|A5PKL0|A5PKL0_BOVIN LOC514433 protein (Fragment) OS=Bos taurus
           GN=LOC514433 PE=2 SV=1
          Length = 626

 Score = 37.4 bits (85), Expect = 0.76
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = -3

Query: 372 LHQGFAPSTMGVGVLSLSVLACRA*CGHRELHEDRFFR*NRPQTQQKHLCCKLIDDAKIT 193
           LH  + P  M +G   +++ A  A   H   H   FFR  R Q  ++ L CK ID  +++
Sbjct: 311 LHNQYGPMNMNMG---MNMAAAAAHHHHHHHHPGAFFRYMRQQCIKQELICKWIDPEQLS 367

Query: 192 LQKLSC 175
             K SC
Sbjct: 368 NPKKSC 373


>tr|B6SL01|B6SL01_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 666

 Score = 37.0 bits (84), Expect = 0.99
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +3

Query: 462 MASWIVSLLSFFWPSVS----NDDLYIS*RLVQSLPIQPSTRYFTLALQDP 602
           MAS ++S L   WP  +     DDL  S RLV SL +   T+ F LAL++P
Sbjct: 1   MASALLSYLQALWPFSALLREEDDLRASARLVGSLSVPEETKQFVLALREP 51


>tr|A7QS73|A7QS73_VITVI Chromosome chr5 scaffold_156, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00005704001
           PE=4 SV=1
          Length = 635

 Score = 37.0 bits (84), Expect = 0.99
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +3

Query: 486 LSFFWP--SVSNDDLYIS*RLVQSLPIQPSTRYFTLALQDPQRPKSVLYIL 632
           L   WP  ++  DDL  S  LV+ LPI   T+ F  A++DP+  +SV+YIL
Sbjct: 10  LQKLWPFSALKFDDLKASDALVRKLPIPEHTKQFVFAVRDPE-SQSVIYIL 59


>tr|Q7X8P4|Q7X8P4_ORYSJ Os04g0490700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0084K20.13 PE=4 SV=1
          Length = 660

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
 Frame = +3

Query: 462 MASWIVSLLSFFWPS---VSNDDLYIS*RLVQSLPIQPSTRYFTLALQDPQRPKS----- 617
           MA+ +++ L   WP    +  DDL  S RL++ +P+   T+ F LAL+D + P S     
Sbjct: 1   MATAVLTYLQSLWPLSALLREDDLRASARLLRGVPVPEETKQFVLALRD-REPGSGSRGG 59

Query: 618 VLYIL 632
           V+YIL
Sbjct: 60  VIYIL 64


>tr|Q01IU8|Q01IU8_ORYSA OSIGBa0130B08.2 protein OS=Oryza sativa
           GN=OSIGBa0130B08.2 PE=4 SV=1
          Length = 660

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
 Frame = +3

Query: 462 MASWIVSLLSFFWPS---VSNDDLYIS*RLVQSLPIQPSTRYFTLALQDPQRPKS----- 617
           MA+ +++ L   WP    +  DDL  S RL++ +P+   T+ F LAL+D + P S     
Sbjct: 1   MATAVLTYLQSLWPLSALLREDDLRASARLLRGVPVPEETKQFVLALRD-REPGSGSRGG 59

Query: 618 VLYIL 632
           V+YIL
Sbjct: 60  VIYIL 64


>tr|A2XUY5|A2XUY5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16424 PE=4 SV=1
          Length = 243

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
 Frame = +3

Query: 462 MASWIVSLLSFFWPS---VSNDDLYIS*RLVQSLPIQPSTRYFTLALQDPQRPKS----- 617
           MA+ +++ L   WP    +  DDL  S RL++ +P+   T+ F LAL+D + P S     
Sbjct: 1   MATAVLTYLQSLWPLSALLREDDLRASARLLRGVPVPEETKQFVLALRD-REPGSGSRGG 59

Query: 618 VLYIL 632
           V+YIL
Sbjct: 60  VIYIL 64


>tr|A2XUY3|A2XUY3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16422 PE=4 SV=1
          Length = 660

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
 Frame = +3

Query: 462 MASWIVSLLSFFWPS---VSNDDLYIS*RLVQSLPIQPSTRYFTLALQDPQRPKS----- 617
           MA+ +++ L   WP    +  DDL  S RL++ +P+   T+ F LAL+D + P S     
Sbjct: 1   MATAVLTYLQSLWPLSALLREDDLRASARLLRGVPVPEETKQFVLALRD-REPGSGSRGG 59

Query: 618 VLYIL 632
           V+YIL
Sbjct: 60  VIYIL 64


>tr|Q6Z567|Q6Z567_ORYSJ Disulfide isomerase-like protein OS=Oryza
           sativa subsp. japonica GN=OSJNBa0007M04.15 PE=4 SV=1
          Length = 287

 Score = 33.9 bits (76), Expect = 8.3
 Identities = 16/49 (32%), Positives = 31/49 (63%)
 Frame = -2

Query: 184 TILQNIRNTVNSFEGLNPTNMSSHGLCAKRVRVNVMQNNAGQIEQGDNL 38
           T+LQ+  ++  + EG+NP ++ +  L      VN+++N+  + EQGD+L
Sbjct: 188 TVLQDFTDSFRNIEGMNPVSLDAISLERMEEVVNIIENDK-KTEQGDSL 235