DK960980
Clone id TST39A01NGRL0008_O03
Library
Length 306
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_O03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
AGTTGCTCGCTTTCAAAGGCTCGTATCCATGTCCCGGTGAAGATTTAGGGTTTCTCAAGG
TTTTACATGAATAAGAGCTGAATTCGCACTCCTCATCCGCGTTGCAGATAGAGCTCTTAC
CTTTTGGTGTCTCTTCGCCTACGCTTGTTGGTGATTCGTTTTCAACATGAAGCAAACAAT
GCAAGCCATCCTGCAGGCATGCCCTTCTCTCTTGCTGTCGACCCAGTCAGGGCCATTTCC
ACGCGCAGAATATGCCAACGCATGACCTCACGGGTTTGTCGGGGAAAATATCTAGGGTTT
GCTCCT
■■Homology search results ■■ -
sp_hit_id P35442
Definition sp|P35442|TSP2_HUMAN Thrombospondin-2 OS=Homo sapiens
Align length 46
Score (bit) 30.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960980|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O03, 5'
(306 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P35442|TSP2_HUMAN Thrombospondin-2 OS=Homo sapiens GN=THBS2 P... 30 2.9
sp|Q16927|VIT1_AEDAE Vitellogenin-A1 OS=Aedes aegypti GN=VGA1 PE... 30 3.8
sp|P35440|TSP2_CHICK Thrombospondin-2 OS=Gallus gallus GN=THBS2 ... 30 4.9
sp|Q0VCR1|CT043_BOVIN UPF0549 protein C20orf43 homolog OS=Bos ta... 29 6.4

>sp|P35442|TSP2_HUMAN Thrombospondin-2 OS=Homo sapiens GN=THBS2 PE=1
SV=2
Length = 1172

Score = 30.4 bits (67), Expect = 2.9
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = -3

Query: 193 QDGLHCLL---HVENESPTSVGEETPKGKSSICNADEECEFSSYSC 65
Q G HCL P VG E K + +C + C+ +++C
Sbjct: 614 QPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNC 659


>sp|Q16927|VIT1_AEDAE Vitellogenin-A1 OS=Aedes aegypti GN=VGA1 PE=1
SV=2
Length = 2169

Score = 30.0 bits (66), Expect = 3.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3

Query: 136 EETPKGKSSICNADEECEFSSYSCKTLRNPKSSPGHGYEPL 14
E + SS ++ E SS S +++ NPK SP Y+PL
Sbjct: 436 ETSSSSSSSSSSSSSSSESSSSSSESVENPKISPVEQYKPL 476


>sp|P35440|TSP2_CHICK Thrombospondin-2 OS=Gallus gallus GN=THBS2
PE=2 SV=1
Length = 1178

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -3

Query: 187 GLHCLL---HVENESPTSVGEETPKGKSSICNADEECEFSSYSC 65
G HCL + P VG E K + +C + C+ ++SC
Sbjct: 622 GFHCLPCPPRYKGSQPYGVGLEVAKTEKQVCEPENPCKDKTHSC 665


>sp|Q0VCR1|CT043_BOVIN UPF0549 protein C20orf43 homolog OS=Bos
taurus PE=2 SV=1
Length = 299

Score = 29.3 bits (64), Expect = 6.4
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -3

Query: 163 ENESPTSVGEETPKGKSSICNADEECEFSSYSCKTLRNPKSSPGHGYEPLKAS 5
E+ S + V EETP EE + KT PKS+ HG KA+
Sbjct: 206 ESVSKSEVSEETPGPSKVKTGKPEETSLDTREKKTNSAPKSAAAHGITSGKAA 258


tr_hit_id Q7PDU3
Definition tr|Q7PDU3|Q7PDU3_PLAYO ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 OS=Plasmodium yoelii yoelii
Align length 79
Score (bit) 34.3
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960980|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O03, 5'
(306 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7PDU3|Q7PDU3_PLAYO ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 OS=Pl... 34 3.2
tr|A7SXV6|A7SXV6_NEMVE Predicted protein OS=Nematostella vectens... 33 9.4

>tr|Q7PDU3|Q7PDU3_PLAYO ERYTHROCYTE MEMBRANE PROTEIN PFEMP3
OS=Plasmodium yoelii yoelii GN=PY01035 PE=4 SV=1
Length = 918

Score = 34.3 bits (77), Expect = 3.2
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = -3

Query: 295 LDIFPDKPVRSCVGIFCAWKWP*LGRQQERRACLQDGLHCLLHVENESPTSVGEET---- 128
+DIFP R C +FC++K+ L E C H L+++N ++G+ T
Sbjct: 738 IDIFP----RQCYLLFCSYKYMCLNMHYETDTCYD---HSDLNLKNLQKENIGKNTYLSN 790

Query: 127 ----PKGKSSICNADEECE 83
+ K + NA++ CE
Sbjct: 791 ICPCSETKEDLSNAEDTCE 809


>tr|A7SXV6|A7SXV6_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g219228 PE=4 SV=1
Length = 424

Score = 32.7 bits (73), Expect = 9.4
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3

Query: 223 GRQQERRACLQDGLHCLLHVENESPTSVGEETPKGKSSICNADEECEFSSYSCKTLRNPK 44
GR+Q R +QD H L+ V E+ S E+ P +++ E E S C+ + P+
Sbjct: 61 GRRQRERESIQDFSHSLMVVREEALRSAEEDRPPPRTAY---SREVEAESAECQQVTAPQ 117

Query: 43 S 41
S
Sbjct: 118 S 118