DK960981 |
Clone id |
TST39A01NGRL0008_O04 |
Library |
TST39 |
Length |
695 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_O04. 5' end sequence. |
Accession |
DK960981 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1487Contig1 |
Sequence |
CTGATGTGAAGGCATCTATCCACACACTTAATGGGCTTCCCTGTCCAAGTTTGCACGGCG GGGGTGCTGCCAAAAGTGCTGATTTTCACCGTCATAGTCTCCATATCTACACTTGGCCAT TCCCTCCTCTGCTGGTTGCTTGGCTTCTATGGATTCGGCAAGGTGGGTGATGAGCCCGGC GATAGAAGCTCACATTTTGATCACCTCACATATGCAGACATTTGTGATGATCAAGATCTC ATAAATTCCACTGATCATGTATATTATGCATACCATGATTCCGATGATACCTTTTTCTGT CAATCTGACATGCCTACTCCGACGCACACTCATGCATCGACCTCTCTGCACATGCACTCA CATGCTGCCCTTCTGCATACCTCTGAAAAGCATCAGGATCGACATGGCGATGTTGTCAAT GATGGCAGTCTTCCTGCATCATGTGGCGCATACGGCGCTGCTCATGATACAGTGGCGGAG AAGGGCTTCTGCTGTGTCTGCCTCTGCCATGTCGACCTCTTCACCGAGCATAGCCGGGTG ATGGGCTGCGGTCATCGGTTTCACAGGCCTTGTTTGGATAGCTGGCTCCGAGCCTGCGGT CGCGTGAAAGTGTGCCCTCTCTGTAGAACTCCCGCATGAAGTAGTGAGGATAGGGATAGG TGCACCGCACATAAGTGTTCTTTACCGTTATTTAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9P7E1 |
Definition |
sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe |
Align length |
47 |
Score (bit) |
48.9 |
E-value |
3.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6U7I1 |
Definition |
tr|B6U7I1|B6U7I1_MAIZE Protein binding protein OS=Zea mays |
Align length |
65 |
Score (bit) |
57.4 |
E-value |
9.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960981|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_O04, 5' (695 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6U7I1|B6U7I1_MAIZE Protein binding protein OS=Zea mays PE=2 ... 57 9e-07 tr|B6TYA1|B6TYA1_MAIZE RING zinc finger protein-like OS=Zea mays... 57 9e-07 tr|A9USX9|A9USX9_MONBE Predicted protein OS=Monosiga brevicollis... 57 1e-06 tr|B8BN21|B8BN21_ORYSI Putative uncharacterized protein OS=Oryza... 52 3e-05 tr|B6TST7|B6TST7_MAIZE RING-H2 finger protein ATL2A OS=Zea mays ... 52 5e-05 tr|Q9FYK6|Q9FYK6_ARATH F21J9.24 OS=Arabidopsis thaliana PE=4 SV=1 51 6e-05 tr|Q6GKW2|Q6GKW2_ARATH At1g24580 OS=Arabidopsis thaliana GN=At1g... 51 6e-05 tr|B6SU83|B6SU83_MAIZE RING-H2 finger protein ATL3F OS=Zea mays ... 51 6e-05 tr|Q9FN60|Q9FN60_ARATH RING zinc finger protein-like OS=Arabidop... 51 8e-05 tr|Q8LDF8|Q8LDF8_ARATH RING zinc finger protein-like OS=Arabidop... 51 8e-05 tr|Q69JZ5|Q69JZ5_ORYSJ Os09g0535500 protein OS=Oryza sativa subs... 51 8e-05 tr|B7F161|B7F161_ORYSJ cDNA clone:002-141-D02, full insert seque... 51 8e-05 tr|A7PZM4|A7PZM4_VITVI Chromosome chr15 scaffold_40, whole genom... 51 8e-05 tr|A3C0Z8|A3C0Z8_ORYSJ Putative uncharacterized protein OS=Oryza... 51 8e-05 tr|A2Z3H2|A2Z3H2_ORYSI Putative uncharacterized protein OS=Oryza... 51 8e-05 tr|A5B787|A5B787_VITVI Putative uncharacterized protein OS=Vitis... 50 1e-04 tr|B8BH33|B8BH33_ORYSI Putative uncharacterized protein OS=Oryza... 50 1e-04 tr|Q7XQ70|Q7XQ70_ORYSJ Os04g0579200 protein OS=Oryza sativa subs... 50 2e-04 tr|B6TTG0|B6TTG0_MAIZE RING zinc finger protein-like OS=Zea mays... 50 2e-04 tr|A3AWP6|A3AWP6_ORYSJ Putative uncharacterized protein OS=Oryza... 50 2e-04 tr|A2XWQ7|A2XWQ7_ORYSI Putative uncharacterized protein OS=Oryza... 50 2e-04 tr|Q7XE36|Q7XE36_ORYSJ Os10g0438800 protein OS=Oryza sativa subs... 49 2e-04 tr|B6TW15|B6TW15_MAIZE Zinc finger, C3HC4 type family protein OS... 49 2e-04 tr|A5AXV4|A5AXV4_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04 tr|B6TV66|B6TV66_MAIZE Protein binding protein OS=Zea mays PE=2 ... 49 3e-04 tr|B4FFV8|B4FFV8_MAIZE Putative uncharacterized protein OS=Zea m... 49 3e-04 tr|A3BAK2|A3BAK2_ORYSJ Putative uncharacterized protein OS=Oryza... 49 3e-04 tr|Q5KEH1|Q5KEH1_CRYNE Putative uncharacterized protein OS=Crypt... 49 3e-04 tr|Q55NY8|Q55NY8_CRYNE Putative uncharacterized protein OS=Crypt... 49 3e-04 tr|Q28I34|Q28I34_XENTR Ring finger protein 38 OS=Xenopus tropica... 49 4e-04
>tr|B6U7I1|B6U7I1_MAIZE Protein binding protein OS=Zea mays PE=2 SV=1 Length = 123
Score = 57.4 bits (137), Expect = 9e-07 Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Frame = +1
Query: 442 CGAYGAAHDTVAEK---GFCCVCLCHVDLFTEHSRVMGCGHRFHRPCLDSWLRACGRVKV 612 CG G HD A G+CCVC+ + R + CGH FHR C+D WL C R Sbjct: 28 CG--GGGHDRSAASPAVGYCCVCISACRDDGDDVRRLPCGHAFHRDCVDRWLARCRR--T 83
Query: 613 CPLCR 627 CPLCR Sbjct: 84 CPLCR 88
>tr|B6TYA1|B6TYA1_MAIZE RING zinc finger protein-like OS=Zea mays PE=2 SV=1 Length = 154
Score = 57.4 bits (137), Expect = 9e-07 Identities = 33/79 (41%), Positives = 36/79 (45%) Frame = +1
Query: 397 DRHGDVVNDGSLPASCGAYGAAHDTVAEKGFCCVCLCHVDLFTEHSRVMGCGHRFHRPCL 576 + H V SL SCG+ G CCVCL E R GC H FHR CL Sbjct: 62 EEHSPAVRFDSL--SCGSGGGVTAPRPLPEGCCVCLGDFHAAAEVRRARGCRHVFHRACL 119
Query: 577 DSWLRACGRVKVCPLCRTP 633 D W A + CPLCRTP Sbjct: 120 DRW--AAHGHRTCPLCRTP 136
>tr|A9USX9|A9USX9_MONBE Predicted protein OS=Monosiga brevicollis GN=23279 PE=4 SV=1 Length = 421
Score = 57.0 bits (136), Expect = 1e-06 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = +1
Query: 466 DTVAEKGFCCVCLCHVD-LFTEHSRVMGCGHR-FHRPCLDSWLRACGRVKVCPLCRTPA* 639 D V E C +C D +E V+ CGH+ FHR CL WL ACG K CP+CR P Sbjct: 354 DQVYEADMCIICFAEFDDASSELKAVLPCGHQTFHRSCLAEWLDACGHDKRCPVCREPVE 413
Query: 640 SS 645 +S Sbjct: 414 TS 415
>tr|B8BN21|B8BN21_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_39152 PE=4 SV=1 Length = 142
Score = 52.4 bits (124), Expect = 3e-05 Identities = 23/47 (48%), Positives = 28/47 (59%) Frame = +1
Query: 490 CCVCLCHVDLFTEHSRVMGCGHRFHRPCLDSWLRACGRVKVCPLCRT 630 C VCL + E R+ GCGH FHR C+D WLR R CP+CR+ Sbjct: 81 CAVCLAEYEDGDELRRLPGCGHAFHRRCVDEWLR---RRPTCPVCRS 124
>tr|B6TST7|B6TST7_MAIZE RING-H2 finger protein ATL2A OS=Zea mays PE=2 SV=1 Length = 192
Score = 51.6 bits (122), Expect = 5e-05 Identities = 26/63 (41%), Positives = 30/63 (47%) Frame = +1
Query: 445 GAYGAAHDTVAEKGFCCVCLCHVDLFTEHSRVMGCGHRFHRPCLDSWLRACGRVKVCPLC 624 G+ G A D E G C VCL E + C H FHR C+D WL R CP+C Sbjct: 109 GSGGGAEDGSEEPGECAVCLAEYAGGEEVRVLPACRHGFHRACVDRWLLT--RAPTCPVC 166
Query: 625 RTP 633 R P Sbjct: 167 RAP 169
>tr|Q9FYK6|Q9FYK6_ARATH F21J9.24 OS=Arabidopsis thaliana PE=4 SV=1 Length = 131
Score = 51.2 bits (121), Expect = 6e-05 Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +1
Query: 478 EKGF-CCVCLCHVDLFTEHSRVMGCGHRFHRPCLDSWLRACGRVKVCPLCRT 630 EKG CCVCLC E S ++ C H FHR CLD+W CPLCR+ Sbjct: 80 EKGVECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFG--NNHTTCPLCRS 129
>tr|Q6GKW2|Q6GKW2_ARATH At1g24580 OS=Arabidopsis thaliana GN=At1g24580 PE=4 SV=1 Length = 113
Score = 51.2 bits (121), Expect = 6e-05 Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +1
Query: 478 EKGF-CCVCLCHVDLFTEHSRVMGCGHRFHRPCLDSWLRACGRVKVCPLCRT 630 EKG CCVCLC E S ++ C H FHR CLD+W CPLCR+ Sbjct: 62 EKGVECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFG--NNHTTCPLCRS 111
>tr|B6SU83|B6SU83_MAIZE RING-H2 finger protein ATL3F OS=Zea mays PE=2 SV=1 Length = 195
Score = 51.2 bits (121), Expect = 6e-05 Identities = 30/78 (38%), Positives = 38/78 (48%) Frame = +1
Query: 394 QDRHGDVVNDGSLPASCGAYGAAHDTVAEKGFCCVCLCHVDLFTEHSRVMGCGHRFHRPC 573 QD+HG +V SLP G+ C VC+ + E + CGHRFH C Sbjct: 92 QDQHGRIV--ASLPTFVVRSGSGAGAE-----CAVCIAELRDGDEGRALPRCGHRFHAAC 144
Query: 574 LDSWLRACGRVKVCPLCR 627 +D+WLR R CPLCR Sbjct: 145 VDAWLRR--RHTTCPLCR 160
>tr|Q9FN60|Q9FN60_ARATH RING zinc finger protein-like OS=Arabidopsis thaliana GN=At5g41400 PE=2 SV=1 Length = 176
Score = 50.8 bits (120), Expect = 8e-05 Identities = 24/53 (45%), Positives = 29/53 (54%) Frame = +1
Query: 490 CCVCLCHVDLFTEHSRVMGCGHRFHRPCLDSWLRACGRVKVCPLCRTPA*SSE 648 C VCL + E R+ C H FHR CLD W+ ++ CPLCRTP S E Sbjct: 105 CAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMMGYNQM-TCPLCRTPFISDE 156
>tr|Q8LDF8|Q8LDF8_ARATH RING zinc finger protein-like OS=Arabidopsis thaliana PE=2 SV=1 Length = 176
Score = 50.8 bits (120), Expect = 8e-05 Identities = 24/53 (45%), Positives = 29/53 (54%) Frame = +1
Query: 490 CCVCLCHVDLFTEHSRVMGCGHRFHRPCLDSWLRACGRVKVCPLCRTPA*SSE 648 C VCL + E R+ C H FHR CLD W+ ++ CPLCRTP S E Sbjct: 105 CAVCLHEFENEDEIRRLTNCQHIFHRSCLDRWMMGYNQM-TCPLCRTPFISDE 156
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