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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960982
Clone id TST39A01NGRL0008_O05
Library
Length 416
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_O05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ACAGCAACCCCAGCTCTCTGGATTAGATTCACGTAGACGATCTCTGGCCAAGTTTGGCCC
GTCAAACTCTCAAGCCATTGCGCAGAGTAGTAATGGTCCTCATATTGCAAGCTCTGAAGT
ATCGTCGGGGTGCTGGTGCAGACATCCATGTCCGACATGGCTCCTTACGAGCAAAGTTTG
GAGGCGTATGCACCTCAGGATGGACTAGGAGGATACATGAACCCAGCCTTTATACCTGCA
ATGATGGCGAATTATCAGACTTCTGATACAGCAGCAGCTGCCGATGCGGCAGCACCAGAA
GCTGCTGTTGCTGCTGGCATGGGTGCCCGTGCACCAGGATCACAAGATGGAGCAGGGCTA
GATATGCCACATTTGTATTAGTTTGCCCGTCAAACTGGGGCTTCTTTGCAATCTCC
■■Homology search results ■■ -
sp_hit_id Q9UHD4
Definition sp|Q9UHD4|CIDEB_HUMAN Cell death activator CIDE-B OS=Homo sapiens
Align length 28
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960982|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O05, 5'
         (416 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UHD4|CIDEB_HUMAN Cell death activator CIDE-B OS=Homo sapien...    31   2.2  
sp|O70303|CIDEB_MOUSE Cell death activator CIDE-B OS=Mus musculu...    30   3.8  
sp|Q6NV74|CB055_HUMAN Uncharacterized protein C2orf55 OS=Homo sa...    30   4.9  
sp|A8MZF0|YK020_HUMAN Uncharacterized protein LOC728008 OS=Homo ...    29   8.4  

>sp|Q9UHD4|CIDEB_HUMAN Cell death activator CIDE-B OS=Homo sapiens
           GN=CIDEB PE=1 SV=2
          Length = 219

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 154 RTWMSAPAPRRYFRACNMRTITTLRNGL 71
           R W SAP P+R FR C+ +   T+R GL
Sbjct: 26  RVWTSAPPPQRPFRVCDHK--RTIRKGL 51


>sp|O70303|CIDEB_MOUSE Cell death activator CIDE-B OS=Mus musculus
           GN=Cideb PE=1 SV=2
          Length = 219

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 154 RTWMSAPAPRRYFRACNMRTITTLRNGL 71
           R W SAP P+R FR C+ +   T+R GL
Sbjct: 26  RVWNSAPPPQRPFRVCDHK--RTVRKGL 51


>sp|Q6NV74|CB055_HUMAN Uncharacterized protein C2orf55 OS=Homo
           sapiens GN=C2orf55 PE=1 SV=3
          Length = 962

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 38  RSLAKFGPSNSQAIAQSSNGPHIASSEVSSGCWCRHPCP 154
           R LA+ GP +S   A S  GP  +  E ++    R PCP
Sbjct: 630 RKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCP 668


>sp|A8MZF0|YK020_HUMAN Uncharacterized protein LOC728008 OS=Homo
           sapiens PE=4 SV=2
          Length = 331

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = +2

Query: 8   PQLSGLDSRRRSLAKFGPSNSQAIAQSSNGPHIASSEVSSGCWCRHPCP 154
           P    L+S   SL   GP           GP   +  VSS  W   P P
Sbjct: 124 PTCRSLESSPHSLVPMGPGREHLEEPPMAGPAAEAERVSSPAWASSPTP 172
tr_hit_id A9SMX6
Definition tr|A9SMX6|A9SMX6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 92
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960982|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O05, 5'
         (416 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SMX6|A9SMX6_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|A9SMX5|A9SMX5_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|Q3IUJ5|Q3IUJ5_NATPD Sensor protein OS=Natronomonas pharaonis ...    33   9.2  

>tr|A9SMX6|A9SMX6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_132416 PE=4 SV=1
          Length = 1148

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
 Frame = +1

Query: 148 MSDMAPYEQSLEA---YAPQDGLGGY-MNPAFIPAMMANYQTSDTXXXXXXXXXXXXXXX 315
           M+   PY  +L +   Y PQ GLGGY +NPA +  MMA Y                    
Sbjct: 537 MAQQNPYYPNLNSAAVYGPQHGLGGYPVNPAMLAPMMAGY----PPPVFDPATAAALASM 592

Query: 316 XXXXXXPGSQDGAGLDMPHLY*FARQTGASLQ 411
                 PGS   A +DM +LY +A   GAS Q
Sbjct: 593 GVRGGVPGSPGQAAVDMQNLYKYA--GGASPQ 622


>tr|A9SMX5|A9SMX5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_132376 PE=4 SV=1
          Length = 1085

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
 Frame = +1

Query: 148 MSDMAPYEQSLEA---YAPQDGLGGY-MNPAFIPAMMANYQTSDTXXXXXXXXXXXXXXX 315
           M+   PY  +L +   Y PQ GLGGY +NPA +  MMA Y                    
Sbjct: 537 MAQQNPYYPNLNSAAVYGPQHGLGGYPVNPAMLAPMMAGY----PPPVFDPATAAALASM 592

Query: 316 XXXXXXPGSQDGAGLDMPHLY*FARQTGASLQ 411
                 PGS   A +DM +LY +A   GAS Q
Sbjct: 593 GVRGGVPGSPGQAAVDMQNLYKYA--GGASPQ 622


>tr|Q3IUJ5|Q3IUJ5_NATPD Sensor protein OS=Natronomonas pharaonis
           (strain DSM 2160 / ATCC 35678) GN=NP0188A PE=4 SV=1
          Length = 566

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 155 SDMDVCTSTPTILQSLQYEDHYYSAQWLESLTGQTW 48
           S  +V   TP++L+S +++D +Y+A W   L G+ W
Sbjct: 257 SRKEVVGRTPSVLKSGKHDDSFYAALWETILDGELW 292