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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960987
Clone id TST39A01NGRL0008_O10
Library
Length 640
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_O10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AATCTACCCGTCGTTCGCCAGTGCATTCATGAAGCAGCAGATTTCCAGTGAAGCTCACCA
CCACCACCACCACTACGCCTACGAGATTAAGGGTATCTGTGAATGGCTCAAATACTGCCA
CACAGTTCTTCGTCTGCTTTGGTGGGTGCAAAACTTCGTGTAAGTGGGCTGCCTTTCTCT
TCCTCCACACACATGAGTTTCGGAGCTCTTGGGACCAAAAGGCTGCCGCACGAATATGTG
GAATTTCTAACAAGCATAAAATGGTTGTCTTGGCGGGGACCTGTCGTACGCAGAGAGCCA
GGTCTTGTACGAGTCTCAGCGAATTTTAAAGCAGAAGAACCACGTCCTCCAGAGATGTCT
ATGGAAAGCGCTTTGCAAATATTAGGAGTTGCTGAGGGAGCTGCTTTTGAGGATGTCATA
AGAGCGAAGAGCAGCTTGCTCAGCAAGCATGGTGGAGATGCTGATTTTGCACTACAGGTA
GAAGCTGCATATGATGTGCTACTTATGCAAAGCTTGATGCAGCGAAGGTTGGGAAAGGTG
GCGGACAACAGTGTTCGTTATGCGGATGTGAAGAAGGGCAAGGCCTTTTCTCATGTAGGG
GAACTGCAGCGGTTTAGTGAAGCTTTGAGCAAAGTTCCTA
■■Homology search results ■■ -
sp_hit_id Q6AD57
Definition sp|Q6AD57|SUCC_LEIXX Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leifsonia xyli subsp. xyli
Align length 129
Score (bit) 30.8
E-value 6.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960987|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O10, 5'
         (640 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6AD57|SUCC_LEIXX Succinyl-CoA ligase [ADP-forming] subunit b...    31   6.2  
sp|Q66HF1|NDUS1_RAT NADH-ubiquinone oxidoreductase 75 kDa subuni...    31   6.2  
sp|Q10064|YAMB_SCHPO Uncharacterized PI3/PI4-kinase family prote...    30   8.1  

>sp|Q6AD57|SUCC_LEIXX Succinyl-CoA ligase [ADP-forming] subunit beta
           OS=Leifsonia xyli subsp. xyli GN=sucC PE=3 SV=1
          Length = 387

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 2/129 (1%)
 Frame = +1

Query: 202 GALGTKRLPHEYVEFLTSIKWLSWRGPVVRRE--PGLVRVSANFKAXXXXXXXXXXXXAL 375
           G +   + P E  E   +I  L  +G VVRR    G  R++  F               L
Sbjct: 57  GGVKVAKNPDEAEEAAKAILGLDIKGHVVRRVMVSGGARIAREF--YFSVLLDRANRSYL 114

Query: 376 QILGVAEGAAFEDVIRAKSSLLSKHGGDADFALQVEAAYDVLLMQSLMQRRLGKVADNSV 555
            +  V  G   E +   K   L++ G D    +    A ++       +  + KVAD  V
Sbjct: 115 SLTSVEGGMEIEQLAVEKPEALARIGVDPIAGVDTTKATEIARAAGFPEELVSKVADVFV 174

Query: 556 RYADVKKGK 582
           +  DV KG+
Sbjct: 175 KLYDVYKGE 183


>sp|Q66HF1|NDUS1_RAT NADH-ubiquinone oxidoreductase 75 kDa subunit,
           mitochondrial OS=Rattus norvegicus GN=Ndufs1 PE=1 SV=1
          Length = 727

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 397 GAAFED--VIRAKSSLLSKHGGDADFALQVEAAYDVLLMQSLMQRRLGKVADNSVRYADV 570
           G A ED  +IRA S +             +   YD L     ++ RLG+V+ N VRY DV
Sbjct: 614 GLAREDWKIIRALSEIAG-----------ITLPYDTL---DQVRNRLGEVSPNLVRYDDV 659

Query: 571 KKGKAFSHVGELQR 612
           ++   F    EL +
Sbjct: 660 EEANYFQQASELAK 673


>sp|Q10064|YAMB_SCHPO Uncharacterized PI3/PI4-kinase family protein
            C1F5.11c OS=Schizosaccharomyces pombe GN=SPAC1F5.11c PE=2
            SV=1
          Length = 3655

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 26/99 (26%), Positives = 38/99 (38%)
 Frame = -3

Query: 434  LLFALMTSSKAAPSATPNICKALSIDISGGRGSSALKFAETRTRPGSLRTTGPRQDNHFM 255
            +L AL  + K   S  P +CK   +D+            +T   PG L        NH  
Sbjct: 1152 ILTALFFTLKDTTSEVPTVCKDHVMDVLKQLFRKIYASKDTEIAPGILGHLVLELSNHNS 1211

Query: 254  LVRNSTYSCGSLLVPRAPKLMCVEEEKGSPLTRSFAPTK 138
            +VR+ST    SLL           E   +P+ +  +P K
Sbjct: 1212 VVRSSTQKLLSLL----------SELSNTPIVKLVSPFK 1240
tr_hit_id A9NS20
Definition tr|A9NS20|A9NS20_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 110
Score (bit) 97.4
E-value 6.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960987|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O10, 5'
         (640 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NS20|A9NS20_PICSI Putative uncharacterized protein OS=Picea...    97   6e-19
tr|Q10S29|Q10S29_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    97   1e-18
tr|A9SDD4|A9SDD4_PHYPA Predicted protein (Fragment) OS=Physcomit...    96   2e-18
tr|Q1KSB6|Q1KSB6_SORBI Putative uncharacterized protein OS=Sorgh...    94   9e-18
tr|B6STV3|B6STV3_MAIZE Putative uncharacterized protein OS=Zea m...    93   1e-17
tr|B8AMU3|B8AMU3_ORYSI Putative uncharacterized protein OS=Oryza...    93   2e-17
tr|A3ADW6|A3ADW6_ORYSJ Putative uncharacterized protein OS=Oryza...    93   2e-17
tr|A9S114|A9S114_PHYPA Predicted protein OS=Physcomitrella paten...    91   6e-17
tr|B4FET3|B4FET3_MAIZE Putative uncharacterized protein OS=Zea m...    89   3e-16
tr|B7FHS6|B7FHS6_MEDTR Putative uncharacterized protein OS=Medic...    87   7e-16
tr|Q9SKS8|Q9SKS8_ARATH Putative uncharacterized protein At2g2092...    84   6e-15
tr|A7P8E5|A7P8E5_VITVI Chromosome chr3 scaffold_8, whole genome ...    84   1e-14
tr|Q0DVC4|Q0DVC4_ORYSJ Os03g0137300 protein (Fragment) OS=Oryza ...    83   1e-14
tr|A8IRV7|A8IRV7_CHLRE Predicted protein OS=Chlamydomonas reinha...    57   1e-06
tr|Q2JQY0|Q2JQY0_SYNJA Putative uncharacterized protein OS=Synec...    55   3e-06
tr|Q018P1|Q018P1_OSTTA Homology to unknown gene OS=Ostreococcus ...    55   4e-06
tr|Q7V7F7|Q7V7F7_PROMM Putative uncharacterized protein OS=Proch...    55   5e-06
tr|Q2JL16|Q2JL16_SYNJB Putative uncharacterized protein OS=Synec...    55   5e-06
tr|A9BA43|A9BA43_PROM4 Putative uncharacterized protein OS=Proch...    54   8e-06
tr|Q8DGG9|Q8DGG9_THEEB Tlr2348 protein OS=Thermosynechococcus el...    54   1e-05
tr|A2C9K8|A2C9K8_PROM3 Putative uncharacterized protein OS=Proch...    54   1e-05
tr|A4RXW3|A4RXW3_OSTLU Predicted protein OS=Ostreococcus lucimar...    54   1e-05
tr|Q7NLT2|Q7NLT2_GLOVI Glr1039 protein OS=Gloeobacter violaceus ...    53   1e-05
tr|B8HQA2|B8HQA2_9CHRO Heat shock protein DnaJ domain protein OS...    52   3e-05
tr|Q7VBR4|Q7VBR4_PROMA Cyanobacteria-specific chaperone containi...    51   5e-05
tr|B7K9K5|B7K9K5_9CHRO Heat shock protein DnaJ domain protein OS...    51   5e-05
tr|A8G433|A8G433_PROM2 Putative uncharacterized protein OS=Proch...    51   7e-05
tr|P73116|P73116_SYNY3 Slr1918 protein OS=Synechocystis sp. (str...    50   9e-05
tr|A3PC65|A3PC65_PROM0 Putative uncharacterized protein OS=Proch...    50   9e-05
tr|Q46LP0|Q46LP0_PROMT Putative uncharacterized protein OS=Proch...    50   1e-04

>tr|A9NS20|A9NS20_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 307

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 54/110 (49%), Positives = 74/110 (67%), Gaps = 7/110 (6%)
 Frame = +1

Query: 268 SWRGPVVRRE-------PGLVRVSANFKAXXXXXXXXXXXXALQILGVAEGAAFEDVIRA 426
           SWR   VR+E          +++ AN KA            AL++LGVAEGA+FE+++RA
Sbjct: 53  SWRS--VRKENYWGHSGKRALQIHANSKADDSVPFEMSFENALKLLGVAEGASFEEILRA 110

Query: 427 KSSLLSKHGGDADFALQVEAAYDVLLMQSLMQRRLGKVADNSVRYADVKK 576
           K+S+L ++  D + A QVEAAYD+LLMQS MQRR GKV D+S+R+ADVK+
Sbjct: 111 KNSILDRNREDQELAAQVEAAYDMLLMQSFMQRRAGKVVDSSIRFADVKQ 160


>tr|Q10S29|Q10S29_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g04440 PE=4 SV=1
          Length = 281

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 55/106 (51%), Positives = 70/106 (66%)
 Frame = +1

Query: 268 SWRGPVVRREPGLVRVSANFKAXXXXXXXXXXXXALQILGVAEGAAFEDVIRAKSSLLSK 447
           S RGP  RR  GL    A+  +            AL++LGVAEGA+F+D++RAK+++L+ 
Sbjct: 36  SRRGPAPRRRLGLAASRADDSSPAPFEMTLEG--ALKLLGVAEGASFDDIMRAKNAVLAS 93

Query: 448 HGGDADFALQVEAAYDVLLMQSLMQRRLGKVADNSVRYADVKKGKA 585
              D D   QVEAAYD+LLMQSL QRR GKV DNS+RYADVK  K+
Sbjct: 94  CKDDQDAVAQVEAAYDMLLMQSLSQRRAGKVVDNSIRYADVKPVKS 139


>tr|A9SDD4|A9SDD4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_127903 PE=4 SV=1
          Length = 228

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 51/90 (56%), Positives = 65/90 (72%)
 Frame = +1

Query: 370 ALQILGVAEGAAFEDVIRAKSSLLSKHGGDADFALQVEAAYDVLLMQSLMQRRLGKVADN 549
           ALQ+LGV EGA+FE+++RAK  +  K GGD +  +QVEAAYD+LLMQSL QRR GKV D+
Sbjct: 16  ALQLLGVREGASFEEILRAKKVMTEKSGGDQEQIVQVEAAYDMLLMQSLSQRRAGKVVDS 75

Query: 550 SVRYADVKKGKAFSHVGELQRFSEALSKVP 639
           +VRYADV+K K  S  G  +   +AL   P
Sbjct: 76  AVRYADVRKPK--SSGGGPEWLQKALKNAP 103


>tr|Q1KSB6|Q1KSB6_SORBI Putative uncharacterized protein OS=Sorghum
           bicolor PE=4 SV=1
          Length = 343

 Score = 93.6 bits (231), Expect = 9e-18
 Identities = 49/88 (55%), Positives = 68/88 (77%)
 Frame = +1

Query: 370 ALQILGVAEGAAFEDVIRAKSSLLSKHGGDADFALQVEAAYDVLLMQSLMQRRLGKVADN 549
           AL++LGVAEGA+F++++RAK+S+L+    D D   QVEAAYD+LLMQSL QRR GKVA+N
Sbjct: 63  ALKLLGVAEGASFDEILRAKNSVLASCKDDQDAVAQVEAAYDMLLMQSLSQRRAGKVANN 122

Query: 550 SVRYADVKKGKAFSHVGELQRFSEALSK 633
           S+RYADVK  K+ +  G + ++ +A  K
Sbjct: 123 SIRYADVKPVKS-AGAGTVPKWMQATMK 149


>tr|B6STV3|B6STV3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 276

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 49/88 (55%), Positives = 68/88 (77%)
 Frame = +1

Query: 370 ALQILGVAEGAAFEDVIRAKSSLLSKHGGDADFALQVEAAYDVLLMQSLMQRRLGKVADN 549
           AL++LGVAEGA+F++++RAK+S+L+    D D   QVEAAYD+LLMQSL QRR GKVA+N
Sbjct: 63  ALKLLGVAEGASFDEILRAKNSVLASCKDDQDAVAQVEAAYDMLLMQSLSQRRAGKVANN 122

Query: 550 SVRYADVKKGKAFSHVGELQRFSEALSK 633
           S+RYADVK  K+ +  G + ++ +A  K
Sbjct: 123 SIRYADVKPVKS-AGAGAVPQWMQATMK 149


>tr|B8AMU3|B8AMU3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09923 PE=4 SV=1
          Length = 219

 Score = 92.8 bits (229), Expect = 2e-17
 Identities = 46/72 (63%), Positives = 59/72 (81%)
 Frame = +1

Query: 370 ALQILGVAEGAAFEDVIRAKSSLLSKHGGDADFALQVEAAYDVLLMQSLMQRRLGKVADN 549
           AL++LGVAEGA+F+D++RAK+++L+    D D   QVEAAYD+LLMQSL QRR GKV DN
Sbjct: 6   ALKLLGVAEGASFDDIMRAKNAVLASCKDDQDAVAQVEAAYDMLLMQSLSQRRAGKVVDN 65

Query: 550 SVRYADVKKGKA 585
           S+RYADVK  K+
Sbjct: 66  SIRYADVKPVKS 77


>tr|A3ADW6|A3ADW6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008988 PE=4 SV=1
          Length = 164

 Score = 92.8 bits (229), Expect = 2e-17
 Identities = 46/72 (63%), Positives = 59/72 (81%)
 Frame = +1

Query: 370 ALQILGVAEGAAFEDVIRAKSSLLSKHGGDADFALQVEAAYDVLLMQSLMQRRLGKVADN 549
           AL++LGVAEGA+F+D++RAK+++L+    D D   QVEAAYD+LLMQSL QRR GKV DN
Sbjct: 6   ALKLLGVAEGASFDDIMRAKNAVLASCKDDQDAVAQVEAAYDMLLMQSLSQRRAGKVVDN 65

Query: 550 SVRYADVKKGKA 585
           S+RYADVK  K+
Sbjct: 66  SIRYADVKPVKS 77


>tr|A9S114|A9S114_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_180193 PE=4 SV=1
          Length = 215

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 47/77 (61%), Positives = 60/77 (77%)
 Frame = +1

Query: 370 ALQILGVAEGAAFEDVIRAKSSLLSKHGGDADFALQVEAAYDVLLMQSLMQRRLGKVADN 549
           ALQ+LGV EGA+FE+++RAK  ++ K GGD +  +QVEAAYD LLMQS  QRR GKV D+
Sbjct: 6   ALQLLGVREGASFEEILRAKK-MIEKTGGDQEQIVQVEAAYDTLLMQSFSQRRAGKVVDS 64

Query: 550 SVRYADVKKGKAFSHVG 600
           +VRYADV+K K+ S  G
Sbjct: 65  AVRYADVRKPKSSSGGG 81


>tr|B4FET3|B4FET3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 276

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 46/88 (52%), Positives = 67/88 (76%)
 Frame = +1

Query: 370 ALQILGVAEGAAFEDVIRAKSSLLSKHGGDADFALQVEAAYDVLLMQSLMQRRLGKVADN 549
           AL++LGVAEGA+F++++RAK+++L+    D D   QVEAAYD+LLMQSL QRR GKVA+N
Sbjct: 63  ALKLLGVAEGASFDEILRAKNAVLASCKDDQDAVAQVEAAYDMLLMQSLSQRRAGKVANN 122

Query: 550 SVRYADVKKGKAFSHVGELQRFSEALSK 633
            +R+ADVK  K+ +  G + ++ +A  K
Sbjct: 123 RIRFADVKPVKS-AGAGTVPQWMQATMK 149


>tr|B7FHS6|B7FHS6_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 287

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 47/109 (43%), Positives = 69/109 (63%)
 Frame = +1

Query: 313 VSANFKAXXXXXXXXXXXXALQILGVAEGAAFEDVIRAKSSLLSKHGGDADFALQVEAAY 492
           V A+ +A            AL++LGV+EGA+F+D++RAK+S+++    D +   QVEAAY
Sbjct: 56  VQASSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNSIVASCKDDQETISQVEAAY 115

Query: 493 DVLLMQSLMQRRLGKVADNSVRYADVKKGKAFSHVGELQRFSEALSKVP 639
           D+LLMQ L QRR GKV  +SVRYADVK+ ++ ++    Q     + K P
Sbjct: 116 DMLLMQRLTQRRAGKVVSSSVRYADVKRVQSQANSSMPQWMQSTMKKAP 164