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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960989
Clone id TST39A01NGRL0008_O12
Library
Length 680
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_O12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAAGAAGAGCGTTTATGATGCACAGGTCAGCCCGTCTCACAAGACTGAGGACTACAAAAC
ACGGAAGCGAAGTTTCAGGCAAGCCAGTAATGGTGCACAGATGTCAGGGCGAGTACTTTA
GACAGCTTCTCAAACCTATTACGTAGATTTGTCTGGGGGCTTTGATACGGTCCTCAGCTG
GTTACTACTACCTCAAATCATCTGCGGACATTTCTTAAAGTGGCGAGTACTTTCTTTTCT
GGGAAACCCCTTGGAGGTTATCATGAGGTGAGGTGCCAGTATCACTTCAGTATATCTTGT
TCCTTGGCGTCTGCAAGGGCTCCCCCCGTCTGACTCGTTCTCTCGCAGACCTTCGATCAA
CTGCATCTACAAACTGTGCTTTGCAGTCTAGTTAGGTCGCGTGTGCTGGGAGCTCGCTGC
TTTTTCTAATATTCTCCAATGAGCTCTCTTTCCAACTTGGAAAAGGGTGCCGTTTGTGCC
GTCAACCCTTTCGCGGGCGGATTGCAGTTTCAATCCTCTCAACCACATCTCACACGGTTT
ATCATGTTCGACCACAGCAATGGTAAAGGTCGAGTTTTCTTTCATCCTGCTGTTGCGCAT
GACATGTTTGGTTCTGTGCAATATCGCATTCTGGATAGTAAGGTATTGATTCCGAACCAG
GAAGTGAAAAGTGAGTGCTC
■■Homology search results ■■ -
sp_hit_id P44469
Definition sp|P44469|PBP2_HAEIN Penicillin-binding protein 2 OS=Haemophilus influenzae
Align length 60
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960989|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O12, 5'
         (680 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P44469|PBP2_HAEIN Penicillin-binding protein 2 OS=Haemophilus...    33   1.4  
sp|Q1CUH2|NADE_HELPH NH(3)-dependent NAD(+) synthetase OS=Helico...    32   4.1  
sp|Q47HR4|LEUC_DECAR 3-isopropylmalate dehydratase large subunit...    31   6.9  
sp|P55068|PGCB_RAT Brevican core protein OS=Rattus norvegicus GN...    30   9.1  
sp|Q61361|PGCB_MOUSE Brevican core protein OS=Mus musculus GN=Bc...    30   9.1  
sp|O25096|NADE_HELPY NH(3)-dependent NAD(+) synthetase OS=Helico...    30   9.1  
sp|Q3U487|HECD3_MOUSE Probable E3 ubiquitin-protein ligase HECTD...    30   9.1  

>sp|P44469|PBP2_HAEIN Penicillin-binding protein 2 OS=Haemophilus
           influenzae GN=mrdA PE=3 SV=1
          Length = 651

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
 Frame = -3

Query: 366 MQLIEGLRENESDGGSPCRRQGTRYTEVILAPHL--------MITSKGFPRKESTRHFKK 211
           ++ I GL +N+ +     RR+GTRYT ++L P+L         +    +P  E   +FK+
Sbjct: 113 LRYIVGLTDNDIENFKKERRRGTRYTPILLKPNLTEEQISRFAVNGYQYPSLEVRPYFKR 172


>sp|Q1CUH2|NADE_HELPH NH(3)-dependent NAD(+) synthetase
           OS=Helicobacter pylori (strain HPAG1) GN=nadE PE=3 SV=1
          Length = 260

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 378 HSL*MQLIEGLRENESDGGSPCRRQGTRYTEVILAPHLMITSKGFPRKESTRHFKKCPQM 199
           H+L M     + EN++D  S C++    YTE  +AP+  I    F     TR    C ++
Sbjct: 54  HALLMPSSASMPENKTDALSLCKKFSISYTEYSIAPYDAIFGSHFKDASLTRKGNFCARL 113


>sp|Q47HR4|LEUC_DECAR 3-isopropylmalate dehydratase large subunit
           OS=Dechloromonas aromatica (strain RCB) GN=leuC PE=3
           SV=1
          Length = 468

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
 Frame = -3

Query: 561 IAVVEHDKPCEMWLRGLKLQSARERVDGTNGTLFQVGKRAHWRILEKAASSQHTRPN*TA 382
           +A  +H+ P + W  G+K   +R++V+  +  + +VG  A++   ++     H       
Sbjct: 58  VATPDHNTPTDHWEEGIKDPISRQQVETLDANIREVGALAYFPFKDQRMGILHVVGPENG 117

Query: 381 KHSL*MQLIEGLRENESDGGSPCRRQGTRYTEV--ILAPHLMITSK 250
                M ++ G     + G   C   G   +EV  +LA   ++  +
Sbjct: 118 ATLPGMTVVCGDSHTSTHGAFACMAHGIGTSEVEHVLATQCLLQKR 163


>sp|P55068|PGCB_RAT Brevican core protein OS=Rattus norvegicus
           GN=Bcan PE=1 SV=2
          Length = 883

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 253 GGYHEVRCQYHFSISCSLASAR-APPV*LVLSQTFDQLHLQTVLCSLVRSR 402
           G + +V C YH S +C +      PP  L L+Q F +  L+  + +++R R
Sbjct: 769 GQWSDVPCNYHLSYTCKMGLVSCGPPPQLPLAQIFGRPRLRYAVDTVLRYR 819


>sp|Q61361|PGCB_MOUSE Brevican core protein OS=Mus musculus GN=Bcan
           PE=1 SV=1
          Length = 883

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 253 GGYHEVRCQYHFSISCSLASAR-APPV*LVLSQTFDQLHLQTVLCSLVRSR 402
           G + +V C YH S +C +      PP  L L+Q F +  L+  + +++R R
Sbjct: 769 GQWSDVPCNYHLSYTCKMGLVSCGPPPQLPLAQIFGRPRLRYAVDTVLRYR 819


>sp|O25096|NADE_HELPY NH(3)-dependent NAD(+) synthetase
           OS=Helicobacter pylori GN=nadE PE=1 SV=1
          Length = 260

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 378 HSL*MQLIEGLRENESDGGSPCRRQGTRYTEVILAPHLMITSKGFPRKESTRHFKKCPQM 199
           H+L M     + EN++D  + C +    YTE  +AP+  I S  F     TR    C ++
Sbjct: 54  HALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARL 113


>sp|Q3U487|HECD3_MOUSE Probable E3 ubiquitin-protein ligase HECTD3
           OS=Mus musculus GN=Hectd3 PE=2 SV=2
          Length = 861

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 561 IAVVE-HDKPCEMWLRGLKLQSARERVDGTNGTLFQVGKRAHWRILE 424
           I +VE  D   ++ LRG+K++S+R+R  G N  LFQ      +  LE
Sbjct: 351 IRIVECRDDGIDVRLRGVKIKSSRQRELGLNADLFQPASLVRYPRLE 397
tr_hit_id B3H738
Definition tr|B3H738|B3H738_ARATH Uncharacterized protein At5g50011.1 OS=Arabidopsis thaliana
Align length 51
Score (bit) 42.0
E-value 0.036
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960989|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O12, 5'
         (680 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3H738|B3H738_ARATH Uncharacterized protein At5g50011.1 OS=Ar...    42   0.036
tr|B4G182|B4G182_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.52 
tr|Q7QI32|Q7QI32_ANOGA AGAP000934-PA (Fragment) OS=Anopheles gam...    36   2.0  
tr|Q5ZE55|Q5ZE55_ORYSJ cDNA clone:J023099H13, full insert sequen...    36   2.6  
tr|B3H582|B3H582_ARATH Uncharacterized protein At5g09461.1 OS=Ar...    36   2.6  
tr|A2WST9|A2WST9_ORYSI Putative uncharacterized protein OS=Oryza...    36   2.6  
tr|B4FJ82|B4FJ82_MAIZE Putative uncharacterized protein OS=Zea m...    35   4.4  
tr|A3W4D4|A3W4D4_9RHOB Hypothetical permease component of C4 dic...    35   5.8  
tr|Q6Z861|Q6Z861_ORYSJ Os02g0315600 protein OS=Oryza sativa subs...    34   7.5  
tr|A2X405|A2X405_ORYSI Putative uncharacterized protein OS=Oryza...    34   7.5  

>tr|B3H738|B3H738_ARATH Uncharacterized protein At5g50011.1
           OS=Arabidopsis thaliana GN=At5g50011 PE=4 SV=1
          Length = 51

 Score = 42.0 bits (97), Expect = 0.036
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
 Frame = +3

Query: 15  MMHRSARLTRLRTTKHGSEVSGKPVM--------VHRCQGEYFRQLLKPIT 143
           M+ +SA  TR RT KH   ++G  V+        +  CQ EYFRQLLKP+T
Sbjct: 1   MVCQSAGQTRFRTLKHEHGITGNIVVRVIACFQPLQDCQAEYFRQLLKPVT 51


>tr|B4G182|B4G182_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 270

 Score = 38.1 bits (87), Expect = 0.52
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +1

Query: 499 GLQFQSSQPHLTRFIMFDHSNGKGRVFFHPAVAHDMFGS 615
           GL+FQ+S      +++FDH+  + RV FHP++A++   S
Sbjct: 75  GLEFQASDTCPKNYVIFDHTYDRSRVMFHPSLANNFASS 113


>tr|Q7QI32|Q7QI32_ANOGA AGAP000934-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP000934 PE=4 SV=4
          Length = 485

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 23/71 (32%), Positives = 36/71 (50%)
 Frame = +1

Query: 283 HFSISCSLASARAPPV*LVLSQTFDQLHLQTVLCSLVRSRVLGARCFF*YSPMSSLSNLE 462
           HF  +C    AR P + + L  TFD+ HL   L   +    +  RCF+  +  ++++ L 
Sbjct: 114 HFGHACLSKVARIPVLYVFLQLTFDEEHLLAALSQELPDCTVALRCFYEVAYANAVARL- 172

Query: 463 KGAVCAVNPFA 495
           KGA+ A  P A
Sbjct: 173 KGALLARYPSA 183


>tr|Q5ZE55|Q5ZE55_ORYSJ cDNA clone:J023099H13, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0688A04.7 PE=2 SV=1
          Length = 245

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 496 GGLQFQSSQPHLTRFIMFDHSNGKGRVFFHPAV 594
           GG +FQ S+     FI+FD ++ KGR+  HPA+
Sbjct: 59  GGFEFQPSKVCPRNFIIFDQTDDKGRIMCHPAL 91


>tr|B3H582|B3H582_ARATH Uncharacterized protein At5g09461.1
           OS=Arabidopsis thaliana GN=At5g09461 PE=4 SV=1
          Length = 54

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 11/54 (20%)
 Frame = +3

Query: 15  MMHRSARLTRLRTTKHGSEV-SGKPVMVHR----------CQGEYFRQLLKPIT 143
           M+ +SA  TR RT K+ +   S +P +V R          CQ EYFR +LKP+T
Sbjct: 1   MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54


>tr|A2WST9|A2WST9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02932 PE=4 SV=1
          Length = 245

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 496 GGLQFQSSQPHLTRFIMFDHSNGKGRVFFHPAV 594
           GG +FQ S+     FI+FD ++ KGR+  HPA+
Sbjct: 59  GGFEFQPSKVCPRNFIIFDQTDDKGRIMCHPAL 91


>tr|B4FJ82|B4FJ82_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 264

 Score = 35.0 bits (79), Expect = 4.4
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 499 GLQFQSSQPHLTRFIMFDHSNGKGRVFFHPAVAHDMFGS 615
           GL+FQ S      +++FD +  + RV FHP++A++ FGS
Sbjct: 70  GLEFQPSDTCPKNYVIFDQTYDRSRVMFHPSLANN-FGS 107


>tr|A3W4D4|A3W4D4_9RHOB Hypothetical permease component of C4
           dicarboxylate transporter OS=Roseovarius sp. 217
           GN=ROS217_10812 PE=4 SV=1
          Length = 441

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 131 QTYYVDLSGGFDTVLSWLLLPQIICGHFLKWRVLSFLGNP--LEVIMR*GASITSV-YLV 301
           Q+ +  + GG D  + +L+L   + G FL+W  +S++  P  L + M+ GA +T +  LV
Sbjct: 315 QSAFSSVPGGLDGQIFFLMLLLFVLGFFLEWIEISYIALPLFLPIFMQSGADLTWIAILV 374

Query: 302 PWRLQ 316
              LQ
Sbjct: 375 AMNLQ 379


>tr|Q6Z861|Q6Z861_ORYSJ Os02g0315600 protein OS=Oryza sativa subsp.
           japonica GN=P0572D06.2 PE=2 SV=1
          Length = 254

 Score = 34.3 bits (77), Expect = 7.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 502 LQFQSSQPHLTRFIMFDHSNGKGRVFFHPAVAHDMFG 612
           L+FQ S      +++FD +  K RV FHP++AH   G
Sbjct: 74  LEFQPSATCPKNYVIFDQTCTKSRVMFHPSLAHKFGG 110


>tr|A2X405|A2X405_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06938 PE=4 SV=1
          Length = 254

 Score = 34.3 bits (77), Expect = 7.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 502 LQFQSSQPHLTRFIMFDHSNGKGRVFFHPAVAHDMFG 612
           L+FQ S      +++FD +  K RV FHP++AH   G
Sbjct: 74  LEFQPSATCPKNYVIFDQTCTKSRVMFHPSLAHKFGG 110