NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960990
Clone id TST39A01NGRL0008_O13
Library
Length 405
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_O13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATATGGGGCAGATGAAAGGAGGGCAGATCGTAAACCTGCTGATCCTAGAATGATGACTGC
ACCTCCAAGCTATGAAGAAGCGCTCGGAAGCCCCGACTATCGTGCAGAGGAGCAAAGAGA
TGGCGGGGGCTTGGCTGCTGCTGTTGCTAGGGCTTCCAAATCAAACGCAAGTCAAGTAAA
CAATGCCCCAAAAGCACCTTCAACACAGAGTCAGAGTGATGATTTTGATGAGTTTGATCC
ACGTGCATCCTCAGGTATTGTTATGAAAGTCTCGTTTAGTTTACATCAACAGTGTGTGAA
AGGCTTTGCCCCTGTTTGGAACAAAAGCAAGCAGCTAGGGGCATTGGCTGTTCATGCCAA
CTCTCTTCAGTGCAGCCTAGTACCCATTGCGCCCCCCCCCCCCCC
■■Homology search results ■■ -
sp_hit_id Q54HP3
Definition sp|Q54HP3|DRG1_DICDI Developmentally-regulated GTP-binding protein 1 homolog OS=Dictyostelium discoideum
Align length 62
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960990|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O13, 5'
         (405 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54HP3|DRG1_DICDI Developmentally-regulated GTP-binding prote...    29   6.3  
sp|A0JNJ4|ZN692_BOVIN Zinc finger protein 692 OS=Bos taurus GN=Z...    29   8.2  
sp|A4IFM7|MYLK2_BOVIN Myosin light chain kinase 2, skeletal/card...    29   8.2  
sp|P0C1B0|FKBP4_EMENI FK506-binding protein 4 OS=Emericella nidu...    29   8.2  

>sp|Q54HP3|DRG1_DICDI Developmentally-regulated GTP-binding protein
           1 homolog OS=Dictyostelium discoideum GN=drg1 PE=3 SV=1
          Length = 370

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/62 (29%), Positives = 36/62 (58%)
 Frame = -2

Query: 356 HEQPMPLAACFCSKQGQSLSHTVDVN*TRLS*QYLRMHVDQTHQNHHSDSVLKVLLGHCL 177
           ++QP P+      K G + SHT +VN T+L  + ++  +   ++ H++D +L+   G+C 
Sbjct: 173 NKQPPPITFKKKEKGGINFSHTPNVNPTQLDSETVKA-ICAEYKIHNADVILR---GNCT 228

Query: 176 LD 171
           +D
Sbjct: 229 VD 230


>sp|A0JNJ4|ZN692_BOVIN Zinc finger protein 692 OS=Bos taurus
           GN=ZNF692 PE=2 SV=1
          Length = 510

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 15/55 (27%)
 Frame = +2

Query: 266 KVSFSLHQQCVK---------------GFAPVWNKSKQLGALAVHANSLQCSLVP 385
           ++ FSLH Q  K               G  PV  K  Q   L  HA+S +CSLVP
Sbjct: 43  QLGFSLHSQLAKFLLDRYTSSGCVLCAGPEPVAPKGLQYLVLLSHAHSRECSLVP 97


>sp|A4IFM7|MYLK2_BOVIN Myosin light chain kinase 2, skeletal/cardiac
           muscle OS=Bos taurus GN=MYLK2 PE=2 SV=1
          Length = 623

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 5   GADERRADRKPADPRMMTAPPSYEEALGSPDYRAEEQRD 121
           G  + + D  P DP     PP+ E+ L SPD + E   D
Sbjct: 37  GPPDPQKDPGPPDPEKDAGPPNPEKELESPDPKKEPDPD 75


>sp|P0C1B0|FKBP4_EMENI FK506-binding protein 4 OS=Emericella
           nidulans GN=fpr4 PE=3 SV=1
          Length = 478

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
 Frame = +2

Query: 11  DERRADRKPADPRMMTAPPSYEEALGSPDYRAEEQRD---------GGGLXXXXXXXXXX 163
           D+  + R  A  R++ APP  +E     DY  E+  +          GG           
Sbjct: 47  DDDSSRRPRATLRIIRAPPGLDEEDSDDDYEDEDDSEDDSEDDEEVNGGPSDKEKARKLK 106

Query: 164 XXXQVNNAPKAPSTQSQSDDFDEFDPRASSGIVMK 268
               +     A S   +SD+ +EFD +A+   ++K
Sbjct: 107 EAAYLKELEDAMSEDDESDEGEEFDLKAAISKLVK 141
tr_hit_id Q948G6
Definition tr|Q948G6|Q948G6_ORYSA Putative epsin OS=Oryza sativa
Align length 95
Score (bit) 42.4
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960990|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O13, 5'
         (405 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q948G6|Q948G6_ORYSA Putative epsin OS=Oryza sativa GN=OSJNBa0...    42   0.012
tr|Q6K8F1|Q6K8F1_ORYSJ cDNA clone:J013110A10, full insert sequen...    42   0.012
tr|A3ACG9|A3ACG9_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.012
tr|A2XAR9|A2XAR9_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.012
tr|A7Q9R1|A7Q9R1_VITVI Chromosome chr5 scaffold_67, whole genome...    39   0.10 
tr|A5APM8|A5APM8_VITVI Putative uncharacterized protein OS=Vitis...    39   0.10 
tr|A7Q9R4|A7Q9R4_VITVI Chromosome chr5 scaffold_67, whole genome...    37   0.50 
tr|Q9LX42|Q9LX42_ARATH Epsin-like protein OS=Arabidopsis thalian...    36   0.85 
tr|Q93YP4|Q93YP4_ARATH Epsin-like protein (At3g59290) OS=Arabido...    36   0.85 
tr|A9RWI5|A9RWI5_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.4  

>tr|Q948G6|Q948G6_ORYSA Putative epsin OS=Oryza sativa
           GN=OSJNBa0049O12.8 PE=4 SV=1
          Length = 945

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
 Frame = +2

Query: 11  DERRADRKPADPRMMTAPPSYEEALGSPDYRAEEQRDGGGLXXXXXXXXXXXXXQ----- 175
           DER  +RKP++ ++ + PP+YE+          + R+GG +             +     
Sbjct: 286 DERPMERKPSNQQIASPPPNYEDVTRDTQDNNHDGRNGGTVPVPVAAAKVSSPPRTSVPP 345

Query: 176 ----------VNNAPKAPSTQSQSDDFDEFDPRAS 250
                     V + P  P T  + + FDEFDPR S
Sbjct: 346 GQVNGVHDNTVEDVPAPPPTHPEVNGFDEFDPRGS 380


>tr|Q6K8F1|Q6K8F1_ORYSJ cDNA clone:J013110A10, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OJ1111_C07.17-1 PE=2
           SV=1
          Length = 945

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
 Frame = +2

Query: 11  DERRADRKPADPRMMTAPPSYEEALGSPDYRAEEQRDGGGLXXXXXXXXXXXXXQ----- 175
           DER  +RKP++ ++ + PP+YE+          + R+GG +             +     
Sbjct: 286 DERPMERKPSNQQIASPPPNYEDVTRDTQDNNHDGRNGGTVPVPVAAAKVSSPPRTSVPP 345

Query: 176 ----------VNNAPKAPSTQSQSDDFDEFDPRAS 250
                     V + P  P T  + + FDEFDPR S
Sbjct: 346 GQVNGVHDNTVEDVPAPPPTHPEVNGFDEFDPRGS 380


>tr|A3ACG9|A3ACG9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008491 PE=4 SV=1
          Length = 945

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
 Frame = +2

Query: 11  DERRADRKPADPRMMTAPPSYEEALGSPDYRAEEQRDGGGLXXXXXXXXXXXXXQ----- 175
           DER  +RKP++ ++ + PP+YE+          + R+GG +             +     
Sbjct: 286 DERPMERKPSNQQIASPPPNYEDVTRDTQDNNHDGRNGGTVPVPVAAAKVSSPPRTSVPP 345

Query: 176 ----------VNNAPKAPSTQSQSDDFDEFDPRAS 250
                     V + P  P T  + + FDEFDPR S
Sbjct: 346 GQVNGVHDNTVEDVPAPPPTHPEVNGFDEFDPRGS 380


>tr|A2XAR9|A2XAR9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09354 PE=4 SV=1
          Length = 945

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
 Frame = +2

Query: 11  DERRADRKPADPRMMTAPPSYEEALGSPDYRAEEQRDGGGLXXXXXXXXXXXXXQ----- 175
           DER  +RKP++ ++ + PP+YE+          + R+GG +             +     
Sbjct: 286 DERPMERKPSNQQIASPPPNYEDVTRDTQDNNHDGRNGGTVPVPVAAAKVSSPPRTSVPP 345

Query: 176 ----------VNNAPKAPSTQSQSDDFDEFDPRAS 250
                     V + P  P T  + + FDEFDPR S
Sbjct: 346 GQVNGVHDNTVEDVPAPPPTHPEVNGFDEFDPRGS 380


>tr|A7Q9R1|A7Q9R1_VITVI Chromosome chr5 scaffold_67, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033584001
           PE=4 SV=1
          Length = 350

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 10/136 (7%)
 Frame = +2

Query: 17  RRADRKPADPRMMTAPPSYEEALGSPDYRAEEQRDGGGLXXXXXXXXXXXXXQVNNAPK- 193
           R+ +RK ++  +  APPSYEEA+        ++RDG                 V+ +P  
Sbjct: 145 RQLERKFSEQNL-DAPPSYEEAVADAHSPVHDERDGA---TPAAPAPKTSSPPVSTSPSQ 200

Query: 194 ---------APSTQSQSDDFDEFDPRASSGIVMKVSFSLHQQCVKGFAPVWNKSKQLGAL 346
                    +P    + D FDEFDPR     V   S S                  LG+L
Sbjct: 201 ATTAVGPSTSPPANKEVDAFDEFDPRGPVSAVPATSISPEMDL-------------LGSL 247

Query: 347 AVHANSLQCSLVPIAP 394
           +   +S   +LVP  P
Sbjct: 248 SESFSSNSLALVPSGP 263


>tr|A5APM8|A5APM8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044143 PE=4 SV=1
          Length = 817

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 10/136 (7%)
 Frame = +2

Query: 17  RRADRKPADPRMMTAPPSYEEALGSPDYRAEEQRDGGGLXXXXXXXXXXXXXQVNNAPK- 193
           R+ +RK ++  +  APPSYEEA+        ++RDG                 V+ +P  
Sbjct: 249 RQLERKFSEQNL-DAPPSYEEAVADAHSPVHDERDGA---TPAAPAPKTSSPPVSTSPSQ 304

Query: 194 ---------APSTQSQSDDFDEFDPRASSGIVMKVSFSLHQQCVKGFAPVWNKSKQLGAL 346
                    +P    + D FDEFDPR     V   S S                  LG+L
Sbjct: 305 ATTAVGPSTSPPANKEVDAFDEFDPRGPVSAVPATSISPEMDL-------------LGSL 351

Query: 347 AVHANSLQCSLVPIAP 394
           +   +S   +LVP  P
Sbjct: 352 SESFSSNSLALVPSGP 367


>tr|A7Q9R4|A7Q9R4_VITVI Chromosome chr5 scaffold_67, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033588001
           PE=4 SV=1
          Length = 887

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
 Frame = +2

Query: 17  RRADRKPADPRMMTAPPSYEEALGSPDYRAEEQRDGGGLXXXXXXXXXXXXXQVNNAPK- 193
           R+ +RK ++  +  APPSYEEA+        ++RDG                 V+ +P  
Sbjct: 285 RQLERKFSEQNL-DAPPSYEEAVADAHSPVHDERDGA---TPAAPAPKTSSPPVSTSPSQ 340

Query: 194 ---------APSTQSQSDDFDEFDPRAS-SGIVMKVSFSLHQQCVKGFAPVWNKSKQLGA 343
                    +P    + D FDEFDPR   SG+      S+ Q        V  +SKQ   
Sbjct: 341 ATTAVGPSTSPPANKEVDAFDEFDPRGPVSGMENPRDLSVCQY-------VQLESKQFAC 393

Query: 344 LAVHANSL 367
            +V A S+
Sbjct: 394 ASVPATSI 401


>tr|Q9LX42|Q9LX42_ARATH Epsin-like protein OS=Arabidopsis thaliana
           GN=F25L23_150 PE=4 SV=1
          Length = 1023

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +2

Query: 26  DRKPADPRMMTAPPSYEEALGSPDYRAEEQRDGGGLXXXXXXXXXXXXXQVNNA--PKA- 196
           +RK ++  +  APPSYEEA+         +RDGG                 N +   KA 
Sbjct: 281 ERKFSEQNIGAAPPSYEEAVSESRSPVYSERDGGETPQVAPPGAAASPLAENISVDNKAA 340

Query: 197 ----PSTQSQSDDFDEFDPRAS 250
                S+  Q + FDEFDPR S
Sbjct: 341 DFVNESSPQQVEAFDEFDPRGS 362


>tr|Q93YP4|Q93YP4_ARATH Epsin-like protein (At3g59290)
           OS=Arabidopsis thaliana GN=At3g59290/F25L23_150 PE=2
           SV=1
          Length = 1024

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +2

Query: 26  DRKPADPRMMTAPPSYEEALGSPDYRAEEQRDGGGLXXXXXXXXXXXXXQVNNA--PKA- 196
           +RK ++  +  APPSYEEA+         +RDGG                 N +   KA 
Sbjct: 281 ERKFSEQNIGAAPPSYEEAVSESRSPVYSERDGGETPQVAPPGAAASPLAENISVDNKAA 340

Query: 197 ----PSTQSQSDDFDEFDPRAS 250
                S+  Q + FDEFDPR S
Sbjct: 341 DFVNESSPQQVEAFDEFDPRGS 362


>tr|A9RWI5|A9RWI5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161419 PE=4 SV=1
          Length = 1094

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 10/142 (7%)
 Frame = +2

Query: 2   YGADERRADRKPADPRMMTAPPSYEEA---LGSPDYRAEEQRDGGGLXXXXXXXXXXXXX 172
           Y  D+  + R        T PP+YEEA   L S     E Q     +             
Sbjct: 483 YDDDDSYSSRNGKSKGGSTPPPAYEEAVQRLASDVDSNEGQGVAAAVAKAFSSQEEATVL 542

Query: 173 QVNNAPKAPS-------TQSQSDDFDEFDPRASSGIVMKVSFSLHQQCVKGFAPVWNKSK 331
             +     PS       +Q+  DDFD+FDPR +S      S S   Q  + F P      
Sbjct: 543 TASEIVPKPSANCSFDASQTADDDFDDFDPRGTS---HSASASTASQPTENFFP------ 593

Query: 332 QLGALAVHANSLQCSLVPIAPP 397
           + G L++  +S   +  P APP
Sbjct: 594 ESGNLSLFPDS---TSAPPAPP 612