DK960999
Clone id TST39A01NGRL0008_O22
Library
Length 643
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_O22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGAGCACTGGCGGGCATTTCTCTTGATCTTCCTCGCCCTCGCCCTCCTGCAGGCCGCCGT
CTGCTACTACTGCCGATGGAGCTCGCGCACCCTCGCCCGCGACCTCAAGATAGCTCAAGC
GGAGCTCTCTGCTGCAGAGCCCGACCATACAAAAGAAGAAGACAAGGATGCGGAAAAGGG
GCTAGCCCTAAAATAGGTGCAGTGCTCGCAGGTATGGCCATTTCAGCAAATTCTGACTTC
CTTATTGCAATATGAAAGTGGGCTCCCGTTCCTGATTTGCCTCCATCGTCTTCATCGAAG
GAGGCAGTGGGGTTTTCTGCTCATATAGAAATTACCCCATTTTTGTGTGTGTGTGGGAGG
ACTTGGATGCCATGTAATTGAAAGATCTGTCTCTGTGTGCGAAATCCGTTCATTGTATGG
GAAGAAGCTACCTTATTCGTCATGGAAGTTCGCACAATCGCCGTGCAGTATGGGGTTTTG
TGGCTATGCTGATTTCTTTACATCTGGCACTTCCTTGCAAGACATGTGCAATAATACAGA
AGAGTGACATACATGATTTCTTGAACTTTGTATATGCTGTCTCTAGATGGAGCTAAATAT
GGAAGAAAACCTTTAAAGTGTTAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P12752
Definition sp|P12752|Y24K_STRGR Uncharacterized protein in phr 5'region OS=Streptomyces griseus
Align length 39
Score (bit) 32.3
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960999|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O22, 5'
(622 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P12752|Y24K_STRGR Uncharacterized protein in phr 5'region OS=... 32 2.0
sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=... 32 2.0
sp|P68638|VCP_VACCW Complement control protein OS=Vaccinia virus... 32 2.6
sp|P68639|VCP_VACCC Complement control protein OS=Vaccinia virus... 32 2.6
sp|Q9N4M4|ANC1_CAEEL Nuclear anchorage protein 1 OS=Caenorhabdit... 32 2.6
sp|P28229|CXG1_MOUSE Gap junction gamma-1 protein OS=Mus musculu... 31 5.9
sp|P36383|CXG1_HUMAN Gap junction gamma-1 protein OS=Homo sapien... 31 5.9
sp|P28228|CXG1_CANFA Gap junction gamma-1 protein OS=Canis famil... 31 5.9
sp|Q2HJ66|CXG1_BOVIN Gap junction gamma-1 protein OS=Bos taurus ... 31 5.9
sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-contain... 31 5.9
sp|A4GVD1|CXG1_PIG Gap junction gamma-1 protein OS=Sus scrofa GN... 30 7.7
sp|Q18678|SYSC_CAEEL Probable seryl-tRNA synthetase, cytoplasmic... 30 7.7

>sp|P12752|Y24K_STRGR Uncharacterized protein in phr 5'region
OS=Streptomyces griseus PE=4 SV=1
Length = 238

Score = 32.3 bits (72), Expect = 2.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1

Query: 85 AHPRPRPQDSSSGALCC-RARPYKRRRQGCGKGASPKIG 198
A P PRP+ +S CC R+RPY RR + G P G
Sbjct: 39 ASPSPRPRRASCATGCCGRSRPYARRLRRPADGHGPAGG 77


>sp|P62598|ARR12_ARATH Two-component response regulator ARR12
OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=1
Length = 596

Score = 32.3 bits (72), Expect = 2.0
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2

Query: 414 NERISHTETDLSITWHPSPPTHTQKWGN--FYMSRKPHCLLR*RRWRQIRNGSPLSYCN 244
N+R+ H +S + HP PP H N F +S PH W + + + +C+
Sbjct: 429 NKRLEHWSNAVSSSTHPPPPAHNSNSINHQFDVSPLPHSRPDPLEWNNVSSSYSIPFCD 487


>sp|P68638|VCP_VACCW Complement control protein OS=Vaccinia virus
(strain Western Reserve) GN=C3L PE=1 SV=1
Length = 263

Score = 32.0 bits (71), Expect = 2.6
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2

Query: 365 GCHVIERSVSVCEIRS----LYGKKLPYSSWKFAQSPCSMG---FCGYADFFTSGTSLQD 523
G H+I S S CE+ S ++ + P QSP S+ GY DF+T G+ +
Sbjct: 115 GYHLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTY 174

Query: 524 MCNN 535
CN+
Sbjct: 175 SCNS 178


>sp|P68639|VCP_VACCC Complement control protein OS=Vaccinia virus
(strain Copenhagen) GN=C3L PE=3 SV=1
Length = 263

Score = 32.0 bits (71), Expect = 2.6
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2

Query: 365 GCHVIERSVSVCEIRS----LYGKKLPYSSWKFAQSPCSMG---FCGYADFFTSGTSLQD 523
G H+I S S CE+ S ++ + P QSP S+ GY DF+T G+ +
Sbjct: 115 GYHLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTY 174

Query: 524 MCNN 535
CN+
Sbjct: 175 SCNS 178


>sp|Q9N4M4|ANC1_CAEEL Nuclear anchorage protein 1 OS=Caenorhabditis
elegans GN=anc-1 PE=1 SV=3
Length = 8545

Score = 32.0 bits (71), Expect = 2.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2

Query: 98 RDLKIAQAELSAAEPDHTKEEDKDAEKG 181
R LK + L A+PDH E+D+D EKG
Sbjct: 8384 RLLKEIEPRLQLAQPDHDNEDDEDEEKG 8411


>sp|P28229|CXG1_MOUSE Gap junction gamma-1 protein OS=Mus musculus
GN=Gjc1 PE=1 SV=1
Length = 396

Score = 30.8 bits (68), Expect = 5.9
Identities = 25/69 (36%), Positives = 31/69 (44%)
Frame = +1

Query: 310 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFVMEVRTIAVQYGVLWLC 489
GF H PF VC R +PC KI + P E T+F++ + YGV LC
Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242

Query: 490 *FLYIWHFL 516
L IW L
Sbjct: 243 LLLNIWEML 251


>sp|P36383|CXG1_HUMAN Gap junction gamma-1 protein OS=Homo sapiens
GN=GJC1 PE=2 SV=1
Length = 396

Score = 30.8 bits (68), Expect = 5.9
Identities = 25/69 (36%), Positives = 31/69 (44%)
Frame = +1

Query: 310 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFVMEVRTIAVQYGVLWLC 489
GF H PF VC R +PC KI + P E T+F++ + YGV LC
Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242

Query: 490 *FLYIWHFL 516
L IW L
Sbjct: 243 LLLNIWEML 251


>sp|P28228|CXG1_CANFA Gap junction gamma-1 protein OS=Canis
familiaris GN=GJC1 PE=3 SV=1
Length = 396

Score = 30.8 bits (68), Expect = 5.9
Identities = 25/69 (36%), Positives = 31/69 (44%)
Frame = +1

Query: 310 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFVMEVRTIAVQYGVLWLC 489
GF H PF VC R +PC KI + P E T+F++ + YGV LC
Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242

Query: 490 *FLYIWHFL 516
L IW L
Sbjct: 243 LLLNIWEML 251


>sp|Q2HJ66|CXG1_BOVIN Gap junction gamma-1 protein OS=Bos taurus
GN=GJC1 PE=2 SV=1
Length = 396

Score = 30.8 bits (68), Expect = 5.9
Identities = 25/69 (36%), Positives = 31/69 (44%)
Frame = +1

Query: 310 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFVMEVRTIAVQYGVLWLC 489
GF H PF VC R +PC KI + P E T+F++ + YGV LC
Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242

Query: 490 *FLYIWHFL 516
L IW L
Sbjct: 243 LLLNIWEML 251


>sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-containing
protein 1 OS=Bos taurus GN=CHORDC1 PE=2 SV=1
Length = 332

Score = 30.8 bits (68), Expect = 5.9
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2

Query: 122 ELSAAEPDHTKEEDKDAEK-GLALK*VQCSQVWPFQQILTSLLQYESGLP 268
+LS+ ++ KEED D K G + K CS+ + Q L + Y SG+P
Sbjct: 134 KLSSGNEENKKEEDSDEIKIGTSCKNGGCSKTYQGPQSLEEVCVYHSGVP 183


tr_hit_id A3BGD1
Definition tr|A3BGD1|A3BGD1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 50
Score (bit) 35.8
E-value 2.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960999|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O22, 5'
(622 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A3BGD1|A3BGD1_ORYSJ Putative uncharacterized protein OS=Oryza... 36 2.1
tr|B3RCJ2|B3RCJ2_CUPTR Putative NnrS transmembrane protein OS=Cu... 35 3.6
tr|Q6Z3H8|Q6Z3H8_ORYSJ Putative bzip-related transcription facto... 34 6.1
tr|Q0J3V2|Q0J3V2_ORYSJ Os08g0551200 protein OS=Oryza sativa subs... 34 6.1

>tr|A3BGD1|A3BGD1_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_022103 PE=4 SV=1
Length = 278

Score = 35.8 bits (81), Expect = 2.1
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Frame = +1

Query: 82 LAHPRPRPQDSSSGALCCR----------ARPYKRRRQGCGKGASPKIGA 201
L HPRPRPQ SSS R +R ++RR CG GA P A
Sbjct: 38 LGHPRPRPQGSSSSPPSLRRPSIVKTQAPSRGWRRRAGTCGGGARPAAAA 87


>tr|B3RCJ2|B3RCJ2_CUPTR Putative NnrS transmembrane protein
OS=Cupriavidus taiwanensis (strain R1 / LMG 19424)
GN=RALTA_B2039 PE=4 SV=1
Length = 397

Score = 35.0 bits (79), Expect = 3.6
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1

Query: 196 GAVLAGMAISANSDFLIAI*KWAPVPDLPPS--SSSKEAVGFSAHIEITPFLCVCGRTW 366
GAV A +A++A + L + +AP P LPP + + GF+A I + FL GR W
Sbjct: 30 GAVFAALALAAWTAMLAGMHAFAPPPALPPMFWHAHEMVFGFAAAI-VVGFLFTAGRAW 87


>tr|Q6Z3H8|Q6Z3H8_ORYSJ Putative bzip-related transcription factor
OS=Oryza sativa subsp. japonica GN=OSJNBb0011H15.7 PE=4
SV=1
Length = 937

Score = 34.3 bits (77), Expect = 6.1
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -3

Query: 296 DEDDGGKSGTGAHFHIAIRKSEFAEMAIPASTAPILGLAPFPHPCLLLLY 147
D+D+GG G+G H H + AE P A AP PH L Y
Sbjct: 240 DDDEGGSDGSGGHIHFPSDDDDDAEPPPPRPAA-----APAPHAATLYTY 284


>tr|Q0J3V2|Q0J3V2_ORYSJ Os08g0551200 protein OS=Oryza sativa subsp.
japonica GN=Os08g0551200 PE=4 SV=1
Length = 1068

Score = 34.3 bits (77), Expect = 6.1
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -3

Query: 296 DEDDGGKSGTGAHFHIAIRKSEFAEMAIPASTAPILGLAPFPHPCLLLLY 147
D+D+GG G+G H H + AE P A AP PH L Y
Sbjct: 125 DDDEGGSDGSGGHIHFPSDDDDDAEPPPPRPAA-----APAPHAATLYTY 169