DK960999 |
Clone id |
TST39A01NGRL0008_O22 |
Library |
TST39 |
Length |
643 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_O22. 5' end sequence. |
Accession |
DK960999 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3198Contig1 |
Sequence |
GGAGCACTGGCGGGCATTTCTCTTGATCTTCCTCGCCCTCGCCCTCCTGCAGGCCGCCGT CTGCTACTACTGCCGATGGAGCTCGCGCACCCTCGCCCGCGACCTCAAGATAGCTCAAGC GGAGCTCTCTGCTGCAGAGCCCGACCATACAAAAGAAGAAGACAAGGATGCGGAAAAGGG GCTAGCCCTAAAATAGGTGCAGTGCTCGCAGGTATGGCCATTTCAGCAAATTCTGACTTC CTTATTGCAATATGAAAGTGGGCTCCCGTTCCTGATTTGCCTCCATCGTCTTCATCGAAG GAGGCAGTGGGGTTTTCTGCTCATATAGAAATTACCCCATTTTTGTGTGTGTGTGGGAGG ACTTGGATGCCATGTAATTGAAAGATCTGTCTCTGTGTGCGAAATCCGTTCATTGTATGG GAAGAAGCTACCTTATTCGTCATGGAAGTTCGCACAATCGCCGTGCAGTATGGGGTTTTG TGGCTATGCTGATTTCTTTACATCTGGCACTTCCTTGCAAGACATGTGCAATAATACAGA AGAGTGACATACATGATTTCTTGAACTTTGTATATGCTGTCTCTAGATGGAGCTAAATAT GGAAGAAAACCTTTAAAGTGTTAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P12752 |
Definition |
sp|P12752|Y24K_STRGR Uncharacterized protein in phr 5'region OS=Streptomyces griseus |
Align length |
39 |
Score (bit) |
32.3 |
E-value |
2.0 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960999|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_O22, 5' (622 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P12752|Y24K_STRGR Uncharacterized protein in phr 5'region OS=... 32 2.0 sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=... 32 2.0 sp|P68638|VCP_VACCW Complement control protein OS=Vaccinia virus... 32 2.6 sp|P68639|VCP_VACCC Complement control protein OS=Vaccinia virus... 32 2.6 sp|Q9N4M4|ANC1_CAEEL Nuclear anchorage protein 1 OS=Caenorhabdit... 32 2.6 sp|P28229|CXG1_MOUSE Gap junction gamma-1 protein OS=Mus musculu... 31 5.9 sp|P36383|CXG1_HUMAN Gap junction gamma-1 protein OS=Homo sapien... 31 5.9 sp|P28228|CXG1_CANFA Gap junction gamma-1 protein OS=Canis famil... 31 5.9 sp|Q2HJ66|CXG1_BOVIN Gap junction gamma-1 protein OS=Bos taurus ... 31 5.9 sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-contain... 31 5.9 sp|A4GVD1|CXG1_PIG Gap junction gamma-1 protein OS=Sus scrofa GN... 30 7.7 sp|Q18678|SYSC_CAEEL Probable seryl-tRNA synthetase, cytoplasmic... 30 7.7
>sp|P12752|Y24K_STRGR Uncharacterized protein in phr 5'region OS=Streptomyces griseus PE=4 SV=1 Length = 238
Score = 32.3 bits (72), Expect = 2.0 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1
Query: 85 AHPRPRPQDSSSGALCC-RARPYKRRRQGCGKGASPKIG 198 A P PRP+ +S CC R+RPY RR + G P G Sbjct: 39 ASPSPRPRRASCATGCCGRSRPYARRLRRPADGHGPAGG 77
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=1 Length = 596
Score = 32.3 bits (72), Expect = 2.0 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = -2
Query: 414 NERISHTETDLSITWHPSPPTHTQKWGN--FYMSRKPHCLLR*RRWRQIRNGSPLSYCN 244 N+R+ H +S + HP PP H N F +S PH W + + + +C+ Sbjct: 429 NKRLEHWSNAVSSSTHPPPPAHNSNSINHQFDVSPLPHSRPDPLEWNNVSSSYSIPFCD 487
>sp|P68638|VCP_VACCW Complement control protein OS=Vaccinia virus (strain Western Reserve) GN=C3L PE=1 SV=1 Length = 263
Score = 32.0 bits (71), Expect = 2.6 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Frame = +2
Query: 365 GCHVIERSVSVCEIRS----LYGKKLPYSSWKFAQSPCSMG---FCGYADFFTSGTSLQD 523 G H+I S S CE+ S ++ + P QSP S+ GY DF+T G+ + Sbjct: 115 GYHLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTY 174
Query: 524 MCNN 535 CN+ Sbjct: 175 SCNS 178
>sp|P68639|VCP_VACCC Complement control protein OS=Vaccinia virus (strain Copenhagen) GN=C3L PE=3 SV=1 Length = 263
Score = 32.0 bits (71), Expect = 2.6 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Frame = +2
Query: 365 GCHVIERSVSVCEIRS----LYGKKLPYSSWKFAQSPCSMG---FCGYADFFTSGTSLQD 523 G H+I S S CE+ S ++ + P QSP S+ GY DF+T G+ + Sbjct: 115 GYHLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTY 174
Query: 524 MCNN 535 CN+ Sbjct: 175 SCNS 178
>sp|Q9N4M4|ANC1_CAEEL Nuclear anchorage protein 1 OS=Caenorhabditis elegans GN=anc-1 PE=1 SV=3 Length = 8545
Score = 32.0 bits (71), Expect = 2.6 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +2
Query: 98 RDLKIAQAELSAAEPDHTKEEDKDAEKG 181 R LK + L A+PDH E+D+D EKG Sbjct: 8384 RLLKEIEPRLQLAQPDHDNEDDEDEEKG 8411
>sp|P28229|CXG1_MOUSE Gap junction gamma-1 protein OS=Mus musculus GN=Gjc1 PE=1 SV=1 Length = 396
Score = 30.8 bits (68), Expect = 5.9 Identities = 25/69 (36%), Positives = 31/69 (44%) Frame = +1
Query: 310 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFVMEVRTIAVQYGVLWLC 489 GF H PF VC R +PC KI + P E T+F++ + YGV LC Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242
Query: 490 *FLYIWHFL 516 L IW L Sbjct: 243 LLLNIWEML 251
>sp|P36383|CXG1_HUMAN Gap junction gamma-1 protein OS=Homo sapiens GN=GJC1 PE=2 SV=1 Length = 396
Score = 30.8 bits (68), Expect = 5.9 Identities = 25/69 (36%), Positives = 31/69 (44%) Frame = +1
Query: 310 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFVMEVRTIAVQYGVLWLC 489 GF H PF VC R +PC KI + P E T+F++ + YGV LC Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242
Query: 490 *FLYIWHFL 516 L IW L Sbjct: 243 LLLNIWEML 251
>sp|P28228|CXG1_CANFA Gap junction gamma-1 protein OS=Canis familiaris GN=GJC1 PE=3 SV=1 Length = 396
Score = 30.8 bits (68), Expect = 5.9 Identities = 25/69 (36%), Positives = 31/69 (44%) Frame = +1
Query: 310 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFVMEVRTIAVQYGVLWLC 489 GF H PF VC R +PC KI + P E T+F++ + YGV LC Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242
Query: 490 *FLYIWHFL 516 L IW L Sbjct: 243 LLLNIWEML 251
>sp|Q2HJ66|CXG1_BOVIN Gap junction gamma-1 protein OS=Bos taurus GN=GJC1 PE=2 SV=1 Length = 396
Score = 30.8 bits (68), Expect = 5.9 Identities = 25/69 (36%), Positives = 31/69 (44%) Frame = +1
Query: 310 GFSAHIEITPFLCVCGRTWMPCN*KICLCVRNPFIVWEEATLFVMEVRTIAVQYGVLWLC 489 GF H PF VC R +PC KI + P E T+F++ + YGV LC Sbjct: 200 GFQVH----PFY-VCSR--LPCPHKIDCFISRP----TEKTIFLL------IMYGVTGLC 242
Query: 490 *FLYIWHFL 516 L IW L Sbjct: 243 LLLNIWEML 251
>sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-containing protein 1 OS=Bos taurus GN=CHORDC1 PE=2 SV=1 Length = 332
Score = 30.8 bits (68), Expect = 5.9 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +2
Query: 122 ELSAAEPDHTKEEDKDAEK-GLALK*VQCSQVWPFQQILTSLLQYESGLP 268 +LS+ ++ KEED D K G + K CS+ + Q L + Y SG+P Sbjct: 134 KLSSGNEENKKEEDSDEIKIGTSCKNGGCSKTYQGPQSLEEVCVYHSGVP 183
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A3BGD1 |
Definition |
tr|A3BGD1|A3BGD1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica |
Align length |
50 |
Score (bit) |
35.8 |
E-value |
2.1 |
Report |
|