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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961000
Clone id TST39A01NGRL0008_O23
Library
Length 653
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_O23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AATAGTGCGGAGGTGGCTGGTGGCTCCTCCGCTGACATGCATAGGGGTCCACGCGGTGCG
TTTGGCAGCGGAAATTGACAACCTGCTGAGCGCGCTCTCGCGCGCGCGCACACACAAAGC
GTACAGAGATAGATTAATCCTGTTTCAGCTTAACTTATGGCTCAATCGGAGTGACATGCT
GGAAGACCCAAAGGCTGCAGCAGGTGCTGATGCCCTTTGCTGCTCAATGCTGCACCCCAA
GGCTGCAGCAGGTGCTGATGAAGAATATCCCACATGTTGAAATGATGGTCACTTCACTTG
GTCGTTGTTGGGAGTGCTTCTTCTTCTTGCAGTCTGGCTCTTCAAATTCTTCAGTGGCAG
AAGAAAGCTTGACTCAAAGGGCAAACACAATCCCCTGCCTCTGATAGCCGACAGGGCCAG
CAGCAGCAGTATCAAGATGCAGGAGGGGCATTCCGTCATCCTGAGCGAAGAGGCGCTAAG
AGGTTTCCCAGTGCGTCTGCCTCTGGATATCTCGAACAAGTCGATCCGCAAAACTTTTGG
TCTGTTTTGCATGCGTGGAACTATGGTTTATCAGAATTTGAGAAGCTCTTGGAGTCTCAG
ATGCATAGGGCAGCCAGTGAGATAGATCTGCGCATTGAATTGTGCCTGCTCAG
■■Homology search results ■■ -
sp_hit_id P39113
Definition sp|P39113|CAT8_YEAST Regulatory protein CAT8 OS=Saccharomyces cerevisiae
Align length 76
Score (bit) 35.0
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961000|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O23, 5'
         (653 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P39113|CAT8_YEAST Regulatory protein CAT8 OS=Saccharomyces ce...    35   0.34 
sp|Q986D9|ENGA_RHILO GTP-binding protein engA OS=Rhizobium loti ...    33   1.7  
sp|Q9QX79|FETUB_RAT Fetuin-B OS=Rattus norvegicus GN=Fetub PE=2 ...    32   2.9  
sp|Q8IZJ3|CPMD8_HUMAN C3 and PZP-like alpha-2-macroglobulin doma...    32   3.8  
sp|Q31IX6|RS3_THICR 30S ribosomal protein S3 OS=Thiomicrospira c...    30   8.5  

>sp|P39113|CAT8_YEAST Regulatory protein CAT8 OS=Saccharomyces
           cerevisiae GN=CAT8 PE=1 SV=2
          Length = 1433

 Score = 35.0 bits (79), Expect = 0.34
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
 Frame = +2

Query: 371 DSKGKHNPLPLIAD--------RASSSSIKMQEGHSVILSE-EALRGFPVRLPLDISNKS 523
           DSKG  N   +I D        R SSS I +Q+  +  L+  +A+    + LPL++S   
Sbjct: 778 DSKGATNQDHMILDVDMTSPAIRTSSSYIILQQATNATLTIFQAINSMYLPLPLNVSRTL 837

Query: 524 IRKTFGLFCMRGTMVY 571
           IR  F L C RG++ Y
Sbjct: 838 IR--FSLLCARGSLEY 851


>sp|Q986D9|ENGA_RHILO GTP-binding protein engA OS=Rhizobium loti
           GN=engA PE=3 SV=1
          Length = 479

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +2

Query: 44  GVHAVRLAAE----IDNLLSALSRARTHKAYRDRLILFQLNLWLNRSDMLEDPKAAAG 205
           G+ AV ++AE    +D L+ A+   RTHK +  R+   +LN WL        P A AG
Sbjct: 354 GIQAVPVSAETGRGLDKLMDAV--LRTHKVWNSRVSTGKLNRWLEAILAHHPPPAVAG 409


>sp|Q9QX79|FETUB_RAT Fetuin-B OS=Rattus norvegicus GN=Fetub PE=2
           SV=1
          Length = 378

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -1

Query: 137 LIYLCTLCVCARARARSAGCQFPLPNAPRGPL 42
           L+ LCTL  C  AR+  A    PLPNAP  PL
Sbjct: 6   LLVLCTLAACCVARSPPAP---PLPNAPFAPL 34


>sp|Q8IZJ3|CPMD8_HUMAN C3 and PZP-like alpha-2-macroglobulin
            domain-containing protein 8 OS=Homo sapiens GN=CPAMD8
            PE=1 SV=1
          Length = 1885

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -1

Query: 236  GAALSSKGHQHLLQPLGLPACHSD*AIS*AETGLIYLCTLCVCARARARSAGCQFPLPNA 57
            GAA++  G  H     G P C SD        G++Y       +  R R A C+   P  
Sbjct: 1704 GAAIARCGCDHDCGAQGNPVCGSD--------GVVY------ASACRLREAACRQAAPLE 1749

Query: 56   PRGPLCMSAEEP-PATSA 6
            P  P C + E+  PA+S+
Sbjct: 1750 PAPPSCCALEQRLPASSS 1767


>sp|Q31IX6|RS3_THICR 30S ribosomal protein S3 OS=Thiomicrospira
           crunogena (strain XCL-2) GN=rpsC PE=3 SV=1
          Length = 228

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 54  RCVWQRKLTTC*ARSRARAHTKRTEID*SCFSL--TYGSIGVTCW--KTQRLQQVLM 212
           R  W R+        R   HT R +ID + F    TYG IGV  W  K ++L+++ M
Sbjct: 164 RAEWYRE-------GRVPLHTLRADIDYATFEADTTYGKIGVKVWIFKGEKLEKISM 213
tr_hit_id Q4PE63
Definition tr|Q4PE63|Q4PE63_USTMA Putative uncharacterized protein OS=Ustilago maydis
Align length 111
Score (bit) 36.2
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961000|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_O23, 5'
         (653 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4PE63|Q4PE63_USTMA Putative uncharacterized protein OS=Ustil...    36   1.8  
tr|B5VQ48|B5VQ48_YEAS6 YMR280Cp-like protein (Fragment) OS=Sacch...    35   4.0  
tr|A6ZMZ6|A6ZMZ6_YEAS7 Catabolite repression protein OS=Saccharo...    35   4.0  
tr|Q0AXU8|Q0AXU8_SYNWW ATP-dependent exoDNAse (Exonuclease V) be...    34   6.8  

>tr|Q4PE63|Q4PE63_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM01600.1 PE=3 SV=1
          Length = 582

 Score = 36.2 bits (82), Expect = 1.8
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
 Frame = -2

Query: 541 TKSFADRLVRDIQRQTHWETS*RLFAQDDGMPLLHLD-TAAAGPVGYQRQGIVFAL*VKL 365
           TK F DR++ +++R    E   ++FA  +      +  +  AG   ++R  +        
Sbjct: 309 TKGFGDRMLAEVKRLAVREMKIKIFAPPERKYATWIGGSILAGLSTFKRMWV-------- 360

Query: 364 SSATEEFEEPDCKKKKHSQQRPSEVTIISTCGIFFISTCCSLGVQH*AAKG 212
            SA E  E+PD   KK      S VT+ ++ G F    CC + V+  A  G
Sbjct: 361 -SAEEYNEDPDVIHKKTQAAMRSRVTLGASRGAFAGQNCCFIAVKMQARTG 410


>tr|B5VQ48|B5VQ48_YEAS6 YMR280Cp-like protein (Fragment)
           OS=Saccharomyces cerevisiae (strain AWRI1631)
           GN=AWRI1631_134180 PE=4 SV=1
          Length = 990

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
 Frame = +2

Query: 371 DSKGKHNPLPLIAD--------RASSSSIKMQEGHSVILSE-EALRGFPVRLPLDISNKS 523
           DSKG  N   +I D        R SSS I +Q+  +  L+  +A+    + LPL++S   
Sbjct: 778 DSKGATNQDHMILDVDMTSPAIRTSSSYIILQQATNATLTIFQAINSMYLPLPLNVSRTL 837

Query: 524 IRKTFGLFCMRGTMVY 571
           IR  F L C RG++ Y
Sbjct: 838 IR--FSLLCARGSLEY 851


>tr|A6ZMZ6|A6ZMZ6_YEAS7 Catabolite repression protein
           OS=Saccharomyces cerevisiae (strain YJM789) GN=CAT8 PE=4
           SV=1
          Length = 1429

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
 Frame = +2

Query: 371 DSKGKHNPLPLIAD--------RASSSSIKMQEGHSVILSE-EALRGFPVRLPLDISNKS 523
           DSKG  N   +I D        R SSS I +Q+  +  L+  +A+    + LPL++S   
Sbjct: 778 DSKGATNQDHMILDVDMTSPAIRTSSSYIILQQATNATLTIFQAINSMYLPLPLNVSRTL 837

Query: 524 IRKTFGLFCMRGTMVY 571
           IR  F L C RG++ Y
Sbjct: 838 IR--FSLLCARGSLEY 851


>tr|Q0AXU8|Q0AXU8_SYNWW ATP-dependent exoDNAse (Exonuclease V) beta
           subunit (Contains helicase and exonuclease domains)
           OS=Syntrophomonas wolfei subsp. wolfei (strain
           Goettingen) GN=Swol_1146 PE=4 SV=1
          Length = 1236

 Score = 34.3 bits (77), Expect = 6.8
 Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -2

Query: 526 DRLVRDIQRQTHWETS*RLFAQDDGMPLLHLDT-----AAAGPVGYQRQ 395
           DRLV  IQR   WE   R+ A D+ M  L +DT     A A P G QRQ
Sbjct: 707 DRLVFFIQRLKEWELESRIMALDEFMGKLFMDTGYYYYAGAMPGGGQRQ 755