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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961010
Clone id TST39A01NGRL0008_P10
Library
Length 642
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_P10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AACAAGTACCACATCAAATCACCTAAAGCATCCATTGCATGAAGAGGCCAATTCACTCTG
CAAGAGGCCACGATCCATCATCGGTGACTACGTCCTGAAACCAAAGCTCAATGCACTCCG
AATGATGACGTTGGTTGAAGACGCACACGATGAAGGTGAAATGTCCTCTGAGATGCTCAG
CTCTAGCTTTATGAGCGGTGAGATTAAGGGCCCGGCGGGCACTAAAGATAATTATCATTT
TGATTGGGTGGAAGCATACAGAGTAAGCATGGAGCTTAGCATGTTTAATCATCACAAAGC
TTAGCTTAGCAAATTGAGCCCGATAAGTACATTGCACTACTACTATCGTGCCGCTAATTA
CACCGAGAGTATATCTCCTCCGACACCACCGCCAATCCTCAGGATGAGCCAAAACGGGAC
AAAAGGAATCCAACAGAGAGCACACATGGTGGTGTAAATTATTATCTCTTTGGACTTAAC
TCATGCTAGTCCTAACTAGACTTTCTCATTACGGTAAATTGAATATAAATACGAGCCCCT
TAATACAAGTTCATAATGCTCATTACTGGCCAATTGTAACATTACTATACGTCGTGCTAG
AGCGCGCTCTTCTACTTGTACAAATTAGAACGATGTGGCTTA
■■Homology search results ■■ -
sp_hit_id Q09341
Definition sp|Q09341|YR24_CAEEL Uncharacterized protein W02B3.4 OS=Caenorhabditis elegans
Align length 38
Score (bit) 30.8
E-value 6.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961010|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_P10, 5'
         (642 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09341|YR24_CAEEL Uncharacterized protein W02B3.4 OS=Caenorha...    31   6.2  
sp|Q148M6|MXRA8_BOVIN Matrix-remodeling-associated protein 8 OS=...    31   6.2  
sp|A6MMZ9|NDHI_ILLOL NAD(P)H-quinone oxidoreductase subunit I, c...    30   8.1  

>sp|Q09341|YR24_CAEEL Uncharacterized protein W02B3.4
           OS=Caenorhabditis elegans GN=W02B3.4 PE=2 SV=2
          Length = 387

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 181 AEHLRGHFTFIVCVFNQRHHSECIELWFQDVVTDDGSW 68
           A  L GH  ++ C  N++   E  +LW+ D +T   SW
Sbjct: 323 AADLHGHIFWVTCTPNEKIVKEYGQLWYLDHLTSKYSW 360


>sp|Q148M6|MXRA8_BOVIN Matrix-remodeling-associated protein 8 OS=Bos
           taurus GN=MXRA8 PE=2 SV=1
          Length = 463

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = -3

Query: 460 NLHHHVCSLLDSFCPVLAHPEDWR-----WCRRRYTLGVISGTIVVVQCTYRA 317
           NLHHH C L +S    L   +D R     W   +  L V  G   ++ C  RA
Sbjct: 154 NLHHHYCHLYESLAVSLEVTDDPRAAGAHWDGEKEVLAVERGAPALLTCVNRA 206


>sp|A6MMZ9|NDHI_ILLOL NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Illicium oligandrum GN=ndhI PE=3 SV=1
          Length = 180

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +2

Query: 14  SNHLKHPLHEEANSLCKRPRSIIGDYVLKPKLNALRMMTLVEDAHD 151
           S + +H L+    SL + P S+IGDY ++  +N+ +M   ++ + D
Sbjct: 128 STYDRHELNYNQISLGRLPMSVIGDYTIQTIMNSTQMKIAMDKSLD 173
tr_hit_id Q5ZSV7
Definition tr|Q5ZSV7|Q5ZSV7_LEGPH Putative uncharacterized protein OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Align length 29
Score (bit) 33.9
E-value 8.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961010|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_P10, 5'
         (642 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5ZSV7|Q5ZSV7_LEGPH Putative uncharacterized protein OS=Legio...    34   8.7  
tr|Q5X2B7|Q5X2B7_LEGPA Putative uncharacterized protein OS=Legio...    34   8.7  
tr|Q5WU39|Q5WU39_LEGPL Putative uncharacterized protein OS=Legio...    34   8.7  
tr|A5IF47|A5IF47_LEGPC Putative uncharacterized protein OS=Legio...    34   8.7  

>tr|Q5ZSV7|Q5ZSV7_LEGPH Putative uncharacterized protein
          OS=Legionella pneumophila subsp. pneumophila (strain
          Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg2409 PE=4
          SV=1
          Length = 272

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 8  TTSNHLKHPLHEEANSLCKRPRSIIGDYV 94
          T SNHL++P+ +  N LC+   S+IG Y+
Sbjct: 2  TNSNHLRNPVTKSLNDLCQDELSVIGSYL 30


>tr|Q5X2B7|Q5X2B7_LEGPA Putative uncharacterized protein
          OS=Legionella pneumophila (strain Paris) GN=lpp2476
          PE=4 SV=1
          Length = 272

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 8  TTSNHLKHPLHEEANSLCKRPRSIIGDYV 94
          T SNHL++P+ +  N LC+   S+IG Y+
Sbjct: 2  TNSNHLRNPVTKSLNDLCQDELSVIGSYL 30


>tr|Q5WU39|Q5WU39_LEGPL Putative uncharacterized protein
          OS=Legionella pneumophila (strain Lens) GN=lpl2332 PE=4
          SV=1
          Length = 272

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 8  TTSNHLKHPLHEEANSLCKRPRSIIGDYV 94
          T SNHL++P+ +  N LC+   S+IG Y+
Sbjct: 2  TNSNHLRNPVTKSLNDLCQDELSVIGSYL 30


>tr|A5IF47|A5IF47_LEGPC Putative uncharacterized protein
          OS=Legionella pneumophila (strain Corby) GN=LPC_2067
          PE=4 SV=1
          Length = 272

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 8  TTSNHLKHPLHEEANSLCKRPRSIIGDYV 94
          T SNHL++P+ +  N LC+   S+IG Y+
Sbjct: 2  TNSNHLRNPVTKSLNDLCQDELSVIGSYL 30