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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961019
Clone id TST39A01NGRL0008_P19
Library
Length 386
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_P19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCTCATGGAAATAGTGGTGTTGTACGAGCAAAATTCAGAAAAAATTTACCACCCAGCTC
TTTGGGTGGAAGGGTTCGCGTCTTTATGTATCCAAGCCGAATTTGAGGGGCCAAGGAAGG
CTGGCTGGAGAGAATGACTCTCCTACAGGCTTCATGAAAACTCTTCTATTAGGCTTGCAG
CCTATTTTCTCACAGCTGCTATTCTAGAAGTGTTATGGTTATTCTACCCTGGGGTATGAT
AACCAGTGAAAGACAATTGACTTTTGTTAATGTTGCGGGATCTTAGTCAGTTACGACCGG
ATTACCTCCAATGAGTTTGTTCTTTTTTGTGAAACTAGCAAATGTTGGAACTCTTCTGGG
AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9C912
Definition sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana
Align length 34
Score (bit) 62.8
E-value 5.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961019|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_P19, 5'
         (360 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsi...    63   5e-10
sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a-1 OS=Arabidopsi...    63   5e-10
sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsi...    62   1e-09
sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsi...    62   1e-09
sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a OS=Caenorhabdit...    56   6e-08
sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a OS=Ictalurus pu...    55   1e-07
sp|P02434|RL35A_XENLA 60S ribosomal protein L35a OS=Xenopus laev...    54   2e-07
sp|P04646|RL35A_RAT 60S ribosomal protein L35a OS=Rattus norvegi...    54   2e-07
sp|Q5R8K6|RL35A_PONAB 60S ribosomal protein L35a OS=Pongo abelii...    54   2e-07
sp|O55142|RL35A_MOUSE 60S ribosomal protein L35a OS=Mus musculus...    54   2e-07
sp|P61272|RL35A_MACFA 60S ribosomal protein L35a OS=Macaca fasci...    54   2e-07
sp|P18077|RL35A_HUMAN 60S ribosomal protein L35a OS=Homo sapiens...    54   2e-07
sp|Q56JY1|RL35A_BOVIN 60S ribosomal protein L35a OS=Bos taurus G...    54   2e-07
sp|Q9USX4|RL33A_SCHPO 60S ribosomal protein L33-A OS=Schizosacch...    52   9e-07
sp|P41056|RL33B_YEAST 60S ribosomal protein L33-B OS=Saccharomyc...    51   2e-06
sp|P05744|RL33A_YEAST 60S ribosomal protein L33-A OS=Saccharomyc...    51   2e-06
sp|Q55BN7|RL35A_DICDI 60S ribosomal protein L35a OS=Dictyosteliu...    49   8e-06
sp|Q9USG6|RL33B_SCHPO 60S ribosomal protein L33-B OS=Schizosacch...    47   3e-05
sp|O48651|ERG1_PANGI Squalene monooxygenase OS=Panax ginseng PE=...    34   0.26 
sp|P20299|RL35A_PYRWO 50S ribosomal protein L35Ae OS=Pyrococcus ...    32   1.3  
sp|Q8TZV6|RL35A_PYRFU 50S ribosomal protein L35Ae OS=Pyrococcus ...    32   1.3  
sp|Q9V1P2|RL35A_PYRAB 50S ribosomal protein L35Ae OS=Pyrococcus ...    32   1.3  
sp|O74099|RL35A_PYRHO 50S ribosomal protein L35Ae OS=Pyrococcus ...    31   1.7  
sp|Q8TYY6|RL35A_METKA 50S ribosomal protein L35Ae OS=Methanopyru...    31   2.2  
sp|Q08916|YP142_YEAST Uncharacterized protein YPL142C OS=Sacchar...    30   4.9  
sp|Q1L8P7|TSP3B_DANRE Thrombospondin-3b OS=Danio rerio GN=thbs3b...    29   6.5  

>sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsis
           thaliana GN=RPL35AC PE=2 SV=1
          Length = 112

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGNSGVVRAKF  NLPP S+G RVRVFMYPS I
Sbjct: 79  PHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a-1 OS=Arabidopsis
           thaliana GN=RPL35AA PE=3 SV=1
          Length = 112

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGNSGVVRAKF  NLPP S+G RVRVFMYPS I
Sbjct: 79  PHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsis
           thaliana GN=RPL35AD PE=3 SV=2
          Length = 111

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGNSGVVR+KF  NLPP S+G RVRVFMYPS I
Sbjct: 78  PHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsis
           thaliana GN=RPL35AB PE=3 SV=1
          Length = 111

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGNSGVVR+KF  NLPP S+G RVRVFMYPS I
Sbjct: 78  PHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a OS=Caenorhabditis
           elegans GN=rpl-33 PE=1 SV=3
          Length = 124

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 23/34 (67%), Positives = 28/34 (82%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGN+G VRAKF  N+PPS+LG R+RV +YPS I
Sbjct: 91  PHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124


>sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a OS=Ictalurus
           punctatus GN=rpl35a PE=3 SV=1
          Length = 110

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 22/33 (66%), Positives = 28/33 (84%)
 Frame = +2

Query: 5   HGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           HGNSG+VRAKF  NLPP ++G R+RV +YPSR+
Sbjct: 78  HGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110


>sp|P02434|RL35A_XENLA 60S ribosomal protein L35a OS=Xenopus laevis
           GN=rpl35a PE=3 SV=2
          Length = 110

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 28/33 (84%)
 Frame = +2

Query: 5   HGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           HGNSG+VRAKFR NLP  ++G R+RV +YPSRI
Sbjct: 78  HGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>sp|P04646|RL35A_RAT 60S ribosomal protein L35a OS=Rattus norvegicus
           GN=Rpl35a PE=3 SV=1
          Length = 110

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 28/33 (84%)
 Frame = +2

Query: 5   HGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           HGNSG+VRAKFR NLP  ++G R+RV +YPSRI
Sbjct: 78  HGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>sp|Q5R8K6|RL35A_PONAB 60S ribosomal protein L35a OS=Pongo abelii
           GN=RPL35A PE=3 SV=1
          Length = 110

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 28/33 (84%)
 Frame = +2

Query: 5   HGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           HGNSG+VRAKFR NLP  ++G R+RV +YPSRI
Sbjct: 78  HGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>sp|O55142|RL35A_MOUSE 60S ribosomal protein L35a OS=Mus musculus
           GN=Rpl35a PE=2 SV=2
          Length = 110

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 28/33 (84%)
 Frame = +2

Query: 5   HGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           HGNSG+VRAKFR NLP  ++G R+RV +YPSRI
Sbjct: 78  HGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
tr_hit_id A9NPR4
Definition tr|A9NPR4|A9NPR4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 34
Score (bit) 68.9
E-value 1.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961019|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_P19, 5'
         (360 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NPR4|A9NPR4_PICSI Putative uncharacterized protein OS=Picea...    69   1e-10
tr|A9NJU9|A9NJU9_PICSI Putative uncharacterized protein OS=Picea...    69   1e-10
tr|A9S3B3|A9S3B3_PHYPA Predicted protein OS=Physcomitrella paten...    66   8e-10
tr|A9RCB8|A9RCB8_PHYPA Predicted protein OS=Physcomitrella paten...    66   8e-10
tr|A9SPY5|A9SPY5_PHYPA Predicted protein OS=Physcomitrella paten...    66   1e-09
tr|A9RBL6|A9RBL6_PHYPA Predicted protein OS=Physcomitrella paten...    66   1e-09
tr|B3TLX9|B3TLX9_ELAGV Ribosomal protein L35A OS=Elaeis guineens...    65   2e-09
tr|Q9ATF4|Q9ATF4_CASSA Ribosomal protein L33 OS=Castanea sativa ...    64   4e-09
tr|B6VC50|B6VC50_VERFO 60S ribosomal protein L35a OS=Vernicia fo...    64   4e-09
tr|A9PB30|A9PB30_POPTR Putative uncharacterized protein OS=Popul...    64   4e-09
tr|A9P9L2|A9P9L2_POPTR Putative uncharacterized protein OS=Popul...    64   4e-09
tr|A5C3V1|A5C3V1_VITVI Putative uncharacterized protein OS=Vitis...    64   4e-09
tr|B7FH49|B7FH49_MEDTR Putative uncharacterized protein OS=Medic...    64   5e-09
tr|B7FGS2|B7FGS2_MEDTR Putative uncharacterized protein OS=Medic...    64   5e-09
tr|A9S6Q2|A9S6Q2_PHYPA Predicted protein OS=Physcomitrella paten...    64   5e-09
tr|B6KHD6|B6KHD6_TOXGO 60s ribosomal protein L33-A, putative OS=...    64   5e-09
tr|Q6I608|Q6I608_ORYSJ Os05g0555800 protein OS=Oryza sativa subs...    63   6e-09
tr|A9PHS4|A9PHS4_POPTR Putative uncharacterized protein OS=Popul...    63   6e-09
tr|A2Y7A6|A2Y7A6_ORYSI Putative uncharacterized protein OS=Oryza...    63   6e-09
tr|B4G0R0|B4G0R0_MAIZE 60S ribosomal protein L33-B OS=Zea mays P...    63   8e-09
tr|B4FT65|B4FT65_MAIZE Putative uncharacterized protein OS=Zea m...    63   8e-09
tr|Q6K8U8|Q6K8U8_ORYSJ Os02g0785800 protein OS=Oryza sativa subs...    62   1e-08
tr|A6N1J9|A6N1J9_ORYSI 60S ribosomal protein l33-b (Fragment) OS...    62   1e-08
tr|A6N1I6|A6N1I6_ORYSI 60S ribosomal protein l35a OS=Oryza sativ...    62   1e-08
tr|A6N0V2|A6N0V2_ORYSI 60S ribosomal protein l33-b OS=Oryza sati...    62   1e-08
tr|A8U9X2|A8U9X2_SIPNU Putative ribosomal protein L35a (Fragment...    62   1e-08
tr|Q9ATW9|Q9ATW9_MAIZE 60S ribosomal protein L33-B OS=Zea mays G...    62   2e-08
tr|Q8W1C9|Q8W1C9_MAIZE 60S ribosomal protein L33-B OS=Zea mays G...    62   2e-08
tr|B6T8S6|B6T8S6_MAIZE 60S ribosomal protein L33-B OS=Zea mays P...    62   2e-08
tr|B6T4G1|B6T4G1_MAIZE 60S ribosomal protein L33-B OS=Zea mays P...    62   2e-08

>tr|A9NPR4|A9NPR4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 112

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGNSGVVRAKFR NLPP S+GGRVRVFMYPSRI
Sbjct: 79  PHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSRI 112


>tr|A9NJU9|A9NJU9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 112

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGNSGVVRAKFR NLPP S+GGRVRVFMYPSRI
Sbjct: 79  PHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSRI 112


>tr|A9S3B3|A9S3B3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162595 PE=4 SV=1
          Length = 111

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 30/34 (88%), Positives = 32/34 (94%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHG+SGVVRA+FR NLPPSSLG RVRVFMYPSRI
Sbjct: 78  PHGSSGVVRARFRNNLPPSSLGARVRVFMYPSRI 111


>tr|A9RCB8|A9RCB8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106107 PE=4 SV=1
          Length = 111

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 30/34 (88%), Positives = 32/34 (94%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHG+SGVVRA+FR NLPPSSLG RVRVFMYPSRI
Sbjct: 78  PHGSSGVVRARFRNNLPPSSLGARVRVFMYPSRI 111


>tr|A9SPY5|A9SPY5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_187235 PE=4 SV=1
          Length = 111

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +2

Query: 5   HGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           HG+SGVVRA+FR NLPPSSLGGRVRVFMYPSRI
Sbjct: 79  HGSSGVVRARFRSNLPPSSLGGRVRVFMYPSRI 111


>tr|A9RBL6|A9RBL6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_62171 PE=4 SV=1
          Length = 111

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +2

Query: 5   HGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           HG+SGVVRA+FR NLPPSSLGGRVRVFMYPSRI
Sbjct: 79  HGSSGVVRARFRSNLPPSSLGGRVRVFMYPSRI 111


>tr|B3TLX9|B3TLX9_ELAGV Ribosomal protein L35A OS=Elaeis guineensis
           var. tenera PE=4 SV=1
          Length = 112

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGNSGVVRAKF+ NLPP S+GG+VRVFMYPS I
Sbjct: 79  PHGNSGVVRAKFKSNLPPKSMGGKVRVFMYPSNI 112


>tr|Q9ATF4|Q9ATF4_CASSA Ribosomal protein L33 OS=Castanea sativa
           PE=4 SV=1
          Length = 112

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGNSGVVRAKF+ NLPP S+G RVRVFMYPS I
Sbjct: 79  PHGNSGVVRAKFKSNLPPKSMGARVRVFMYPSNI 112


>tr|B6VC50|B6VC50_VERFO 60S ribosomal protein L35a OS=Vernicia
           fordii GN=RPL35A PE=4 SV=1
          Length = 112

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGNSGVVRAKF+ NLPP S+G RVRVFMYPS I
Sbjct: 79  PHGNSGVVRAKFKSNLPPKSMGARVRVFMYPSNI 112


>tr|A9PB30|A9PB30_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 112

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = +2

Query: 2   PHGNSGVVRAKFRKNLPPSSLGGRVRVFMYPSRI 103
           PHGNSGVVRAKF+ NLPP S+G RVRVFMYPS I
Sbjct: 79  PHGNSGVVRAKFKSNLPPKSMGARVRVFMYPSNI 112