DK961038
Clone id TST39A01NGRL0009_A15
Library
Length 670
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_A15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
TGTTAATTTCTTTGTAGTTGTACAAGTTGCACTCATAGCGTGGATAATGCGGAGTCATAC
TCTTTATTTGAGAAACCTTCTGATTGTTTTGATCCGTCTTGTGGTTTATTGAATCAAGCT
ACTGGCTCGTTGTTGTCTTTCACTTCAAGCCCTCCTCCTGAGATTGAGATATTCTCTTTC
TTGCAGAAAATTGGATTCAAAACCTTTGCGGTCAAGAAGTCAAAGTGTTTCAAATGTATC
ATCAAGAAGCGTCTCAAGGTCTCCTCCTCCCACCAACAAAAGGCGGCCGTCTCAAAGTAT
ATCACGTTCTCCTCCTCGGCGATTCCGTCGGTCCAGATCTCCTCCAAGACGTGGCAGGTC
ACCTAACTATAGACGCAGGTCAAGGTCTCCACTTAGGCGTGCCAATACTCGCTCTCCTAG
GAGGCGTCGCCGCTCGTATTCTCGGTCCCCTCGACGGCGATCTCCTATCCCTGCTGCTCG
TTCACCCAGGAGGAGGCACTCACCACAGTTGTCTCATTCTCCCCGGGGCCGCTCTCCCAT
TATTCGCTCCCCAAGGAGACGACACTCACCTATTCATAAACGACCTTCACCTCGGAGAAG
ACCTTCGCCTCCTCACTCTCCCCGACATCGACGACGATCACCACGGTCTGCTCACTCTCC
AGTTCGGCGT
■■Homology search results ■■ -
sp_hit_id O69969
Definition sp|O69969|DAPF_STRCO Diaminopimelate epimerase OS=Streptomyces coelicolor
Align length 67
Score (bit) 31.2
E-value 5.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961038|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A15, 5'
(670 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O69969|DAPF_STRCO Diaminopimelate epimerase OS=Streptomyces c... 31 5.2
sp|A1WXI8|BCHB_HALHL Light-independent protochlorophyllide reduc... 31 5.2
sp|P27680|COQ3_YEAST Hexaprenyldihydroxybenzoate methyltransfera... 31 6.8
sp|A8G2P6|SYI_PROM2 Isoleucyl-tRNA synthetase OS=Prochlorococcus... 30 8.9

>sp|O69969|DAPF_STRCO Diaminopimelate epimerase OS=Streptomyces
coelicolor GN=dapF PE=3 SV=1
Length = 289

Score = 31.2 bits (69), Expect = 5.2
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3

Query: 195 IQNLCGQEVKVFQMYHQEA---SQGLLLPPTKGGRLKVYHVLLLGD-SVGPDLLQDVAGH 362
+ +CG V+VF Y Q A ++G L T+GG +K H+ GD +VG AG
Sbjct: 81 VAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGG-VKTVHIAKNGDVTVGMGRALLPAGD 139

Query: 363 LTIDAGQ 383
+ + G+
Sbjct: 140 VEVSVGE 146


>sp|A1WXI8|BCHB_HALHL Light-independent protochlorophyllide
reductase subunit B OS=Halorhodospira halophila (strain
DSM 244 / SL1) GN=bchB PE=3 SV=1
Length = 526

Score = 31.2 bits (69), Expect = 5.2
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3

Query: 309 LLLGDSVGPDLLQDVAGHLTIDAGQGLHLGVPILAL 416
LL+GDS +LLQD G D QG+ L VP++ L
Sbjct: 89 LLVGDSCTAELLQDQPG----DLAQGMDLPVPVIGL 120


>sp|P27680|COQ3_YEAST Hexaprenyldihydroxybenzoate methyltransferase,
mitochondrial OS=Saccharomyces cerevisiae GN=COQ3 PE=1
SV=2
Length = 312

Score = 30.8 bits (68), Expect = 6.8
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3

Query: 320 AEEENVIYFETAAFCWWEEETLRRFL-MIHLKHFDFLTAKVLNPIFCKKENISISG 156
A E+ V +F+ A WW+ + +R L ++L DF+ V N + + I + G
Sbjct: 36 ASEDEVKHFQELAPTWWDTDGSQRILHKMNLTRLDFVQRTVRNQVKIQNPEIFVPG 91


>sp|A8G2P6|SYI_PROM2 Isoleucyl-tRNA synthetase OS=Prochlorococcus
marinus (strain MIT 9215) GN=ileS PE=3 SV=1
Length = 965

Score = 30.4 bits (67), Expect = 8.9
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Frame = -3

Query: 392 VETLTCVYS*VTCHVLEEIWTD--GIAEEENVIYFETAAFCW-WEEETLRRFLMIHLKHF 222
VE L + S V CH+ E+IW + + +E++V F W+ E+L + H+ +
Sbjct: 786 VENLAVLISPVLCHMAEDIWQNIPYLTKEKSVFQRGWPIFSQSWKNESLNQ----HITNL 841

Query: 221 DFLTAKVLNPIFCKKENISISGGGLEVKDNNEPVA*FNKPQDGSKQSEGFSNKEYD 54
L ++ N N I G LE + N P F K D F N++ D
Sbjct: 842 RNLRVEI-NKAIEGCRNKQIIGAALETEVNYLPKDKFVK--DSLNWLRKFGNEDVD 894


tr_hit_id B6KM77
Definition tr|B6KM77|B6KM77_TOXGO PHD-finger domain-containing protein OS=Toxoplasma gondii ME49
Align length 35
Score (bit) 34.3
E-value 7.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961038|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A15, 5'
(670 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6KM77|B6KM77_TOXGO PHD-finger domain-containing protein OS=T... 34 7.3

>tr|B6KM77|B6KM77_TOXGO PHD-finger domain-containing protein
OS=Toxoplasma gondii ME49 GN=TGME49_035550 PE=4 SV=1
Length = 551

Score = 34.3 bits (77), Expect = 7.3
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1

Query: 442 SVPSTAISYPCCSFTQEEALTTVVSFSPGPLSHYS 546
SVPS+A S PCCSF+ + + SFS S +S
Sbjct: 73 SVPSSAASSPCCSFSSSPSCSPFASFSSSSSSCFS 107