| DK961039 |
| Clone id |
TST39A01NGRL0009_A16 |
| Library |
TST39 |
| Length |
666 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_A16. 5' end sequence. |
| Accession |
DK961039 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
- |
| Sequence |
CTCACTCTCTGTCTAAGCTAGATTGTCAGGAGATAGCCCACACACACACACACACTCTCG
GACTCATTTTCTCTCTCTAAAACTTACACAAGCAGGTAGCTCGGTTCTGCCTCTCTCTTC
ATTGTCTCTCCCCTTGTGCGCTTCCGCTCCCCCCCCGCCCCCAAAAAACCCCACCACCCA
CCATCAAACAACAATACAGCAAACCTGAGTCGCTCTCTTCTCCCGCACACTGCCAATGCA
CACATACCCCACTGCCAAGCTTGGGGTAAAACATCTTTCTCCACCCACAAGCAAACTAGC
TCCAACAGACACGAAGATCCTCGAAACCCTAGCTCCACTAGAATCAGGTGGAGTCTACCG
GACACCAAAACTTTAAAGAAAGCATCATCGGGATCACATGCTCAGGCTTTTATGGTAATA
TCTATGTGCTTATTTTGTCGAAACAGCATGTTTCATTGGCTTCTTTCGAATATTATGCCC
AAAACATATATGGCCCCTCTTAATCTGTGAAACGCCTCCAGAATGAGGGCATCTAGAGAA
CAGTATAAAGCGAAGTGCATGCATGCGTACACGAACATACAGCTAACTGCTCGCAAAGGT
GACCTTCTCTCACAACTCTGAGATATTCATGGCTACAACAGAGATTTCGGCTGACACGAC
CTGTGG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q8QZR0 |
| Definition |
sp|Q8QZR0|TR1L1_MOUSE Translocation-associated membrane protein 1-like 1 OS=Mus musculus |
| Align length |
54 |
| Score (bit) |
30.8 |
| E-value |
6.7 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9UNW9 |
| Definition |
tr|A9UNW9|A9UNW9_MONBE Predicted protein OS=Monosiga brevicollis |
| Align length |
16 |
| Score (bit) |
28.9 |
| E-value |
0.46 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961039|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A16, 5'
(666 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9UNW9|A9UNW9_MONBE Predicted protein OS=Monosiga brevicollis... 29 0.46
tr|B2AQR9|B2AQR9_PODAN Predicted CDS Pa_4_3390 OS=Podospora anse... 26 0.73
tr|Q6ZIB1|Q6ZIB1_ORYSJ Putative uncharacterized protein OJ1770_H... 28 3.5
tr|A9V8B1|A9V8B1_MONBE Predicted protein OS=Monosiga brevicollis... 27 5.2
tr|Q4SUV8|Q4SUV8_TETNG Chromosome undetermined SCAF13839, whole ... 27 6.2
tr|Q4S2K3|Q4S2K3_TETNG Chromosome 17 SCAF14760, whole genome sho... 34 9.4
>tr|A9UNW9|A9UNW9_MONBE Predicted protein OS=Monosiga brevicollis
GN=30739 PE=4 SV=1
Length = 326
Score = 28.9 bits (63), Expect(3) = 0.46
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 41 HTHTHSRTHFLSLKLT 88
HTHTH+ TH LSL L+
Sbjct: 160 HTHTHTHTHTLSLSLS 175
Score = 25.8 bits (55), Expect(3) = 0.46
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 38 PHTHTHSRTH 67
PHTHTH+ TH
Sbjct: 151 PHTHTHTHTH 160
Score = 20.8 bits (42), Expect(3) = 0.46
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 33 IAHTHTHT 56
I HTHTHT
Sbjct: 150 IPHTHTHT 157
>tr|B2AQR9|B2AQR9_PODAN Predicted CDS Pa_4_3390 OS=Podospora
anserina PE=4 SV=1
Length = 433
Score = 25.8 bits (55), Expect(3) = 0.73
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 41 HTHTHSRTHFLSLKLTQ 91
HTHTH+ TH S +T+
Sbjct: 333 HTHTHTHTHITSHHITR 349
Score = 25.0 bits (53), Expect(3) = 0.73
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 21 DCQEIAHTHTHT 56
+C+E HTHTHT
Sbjct: 323 NCEENTHTHTHT 334
Score = 23.9 bits (50), Expect(3) = 0.73
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 32 DSPHTHTHSRTH 67
++ HTHTH+ TH
Sbjct: 326 ENTHTHTHTHTH 337
>tr|Q6ZIB1|Q6ZIB1_ORYSJ Putative uncharacterized protein
OJ1770_H02.20 OS=Oryza sativa subsp. japonica
GN=OJ1770_H02.20 PE=4 SV=1
Length = 180
Score = 28.1 bits (61), Expect(2) = 3.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 3 HSLSKLDCQEIAHTHTHT 56
HSLS L ++HTHTHT
Sbjct: 6 HSLSLLSLLSLSHTHTHT 23
Score = 25.8 bits (55), Expect(2) = 3.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 41 HTHTHSRTHFLSLKL 85
HTHTH+ TH SL L
Sbjct: 18 HTHTHTHTHTHSLSL 32
>tr|A9V8B1|A9V8B1_MONBE Predicted protein OS=Monosiga brevicollis
GN=33899 PE=4 SV=1
Length = 787
Score = 26.9 bits (58), Expect(2) = 5.2
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 41 HTHTHSRTHFLSL 79
HTHTH+ TH LSL
Sbjct: 353 HTHTHTHTHSLSL 365
Score = 26.2 bits (56), Expect(2) = 5.2
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 35 SPHTHTHSRTH 67
+PHTHTH+ TH
Sbjct: 347 TPHTHTHTHTH 357
>tr|Q4SUV8|Q4SUV8_TETNG Chromosome undetermined SCAF13839, whole
genome shotgun sequence. (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00012286001 PE=4 SV=1
Length = 2307
Score = 26.6 bits (57), Expect(2) = 6.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 41 HTHTHSRTHFLSLKL 85
HTHTH+ TH SL+L
Sbjct: 114 HTHTHTHTHGRSLRL 128
Score = 26.2 bits (56), Expect(2) = 6.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 20 RLSGDSPHTHTHSRTH 67
R +G HTHTH+ TH
Sbjct: 101 RAAGQFTHTHTHTHTH 116
>tr|Q4S2K3|Q4S2K3_TETNG Chromosome 17 SCAF14760, whole genome
shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00025041001 PE=4 SV=1
Length = 419
Score = 33.9 bits (76), Expect = 9.4
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Frame = +1
Query: 313 EDPRNPSSTRIRWSLPDTKTLKKASSGSHAQ-------AFMVISMCLFCRNSMFHW 459
E+PR P R RW TL++ +S AQ F+V+SM + C +++ W
Sbjct: 127 EEPRGPEEPRSRWMERVRLTLEEPTSSLAAQILASVSVVFVVVSMVMLCASTLPDW 182
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